Gene annotation
Transcriptome id Sobic.005G025900.1
Synonym SbPIN7, Sb05g002150, PIN1, ATPIN1, efflux carriers pin-formed
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database,expressed in leaf, stem and root, expression induced by IAA, BR and ABA treatments" (PubMedID : 20528920)
auxin efflux carrier component, putative, expressed
UniProt C5Y431
Pfam PF03547
Panther DB PTHR31752 PTHR31752:SF20
NCBI CDD -
KEGG Orthology K13947; auxin efflux carrier family protein
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT2G01420 : Auxin efflux carrier family protein
RAP-DB (Rice) LOC_Os11g04190.1 : auxin efflux carrier component, putative, expressed
MaizeGDB (Corn) Zm00025a033214 , Zm00025a022017 , Zm00025a028269 , Zm00025a033405 , Zm00025a049447 , Zm00025a051668
Brachypodium KQK01960 , KQJ89538 , KQK18833 , KQK16936
Barley HORVU7Hr1G038700.9 , HORVU7Hr1G038700.8 , HORVU7Hr1G038700.1 , HORVU7Hr1G038700.3 , HORVU7Hr1G038700.2 , HORVU7Hr1G038700.5 , HORVU4Hr1G026680.14 , HORVU4Hr1G026680.15 , HORVU4Hr1G026680.12 , HORVU4Hr1G026680.13 , HORVU4Hr1G026680.10 , HORVU4Hr1G026680.11 , HORVU3Hr1G057630.28 , HORVU3Hr1G111420.1 , HORVU7Hr1G110470.10 , HORVU7Hr1G110470.11 , HORVU3Hr1G057630.27 , HORVU7Hr1G038700.20 , HORVU7Hr1G038700.21 , HORVU7Hr1G038700.23 , HORVU7Hr1G038700.24 , HORVU4Hr1G026680.4 , HORVU4Hr1G026680.5 , HORVU4Hr1G026680.6 , HORVU4Hr1G026680.7 , HORVU4Hr1G026680.1 , HORVU4Hr1G026680.2 , HORVU4Hr1G026680.3 , HORVU4Hr1G026680.8 , HORVU4Hr1G026680.9 , HORVU6Hr1G076110.7 , HORVU7Hr1G038700.19 , HORVU7Hr1G038700.18 , HORVU7Hr1G038700.15 , HORVU7Hr1G038700.14 , HORVU7Hr1G038700.17 , HORVU7Hr1G038700.16 , HORVU7Hr1G038700.13 , HORVU7Hr1G038700.12 , HORVU6Hr1G076110.9 , HORVU3Hr1G057630.14 , HORVU3Hr1G057630.15 , HORVU3Hr1G057630.16 , HORVU3Hr1G057630.17 , HORVU3Hr1G057630.10 , HORVU3Hr1G057630.11 , HORVU3Hr1G057630.12 , HORVU3Hr1G057630.13 , HORVU3Hr1G057630.18 , HORVU3Hr1G057630.19 , HORVU7Hr1G110470.8 , HORVU7Hr1G110470.9 , HORVU7Hr1G110470.1 , HORVU7Hr1G110470.6 , HORVU7Hr1G110470.7 , HORVU7Hr1G110470.4 , HORVU7Hr1G110470.5 , HORVU6Hr1G076110.13 , HORVU6Hr1G076110.12 , HORVU6Hr1G076110.11 , HORVU6Hr1G076110.10 , HORVU6Hr1G076110.17 , HORVU6Hr1G076110.16 , HORVU6Hr1G076110.15 , HORVU6Hr1G076110.14 , HORVU3Hr1G057630.21 , HORVU3Hr1G057630.20 , HORVU3Hr1G057630.23 , HORVU3Hr1G057630.22 , HORVU3Hr1G057630.25 , HORVU3Hr1G057630.24 , HORVU1Hr1G091030.7 , HORVU3Hr1G057630.26 , HORVU6Hr1G076110.2 , HORVU6Hr1G076110.1 , HORVU1Hr1G091030.8 , HORVU6Hr1G076110.6 , HORVU6Hr1G076110.5 , HORVU1Hr1G091030.4 , HORVU1Hr1G091030.5 , HORVU1Hr1G091030.6 , HORVU6Hr1G076110.8 , HORVU1Hr1G091030.1 , HORVU1Hr1G091030.2 , HORVU1Hr1G091030.3 , HORVU3Hr1G057630.9 , HORVU3Hr1G057630.4 , HORVU3Hr1G057630.5 , HORVU3Hr1G057630.3 , HORVU3Hr1G057630.1
Wheat TraesCS4A02G188100 , TraesCS4D02G125300 , TraesCS3D02G221900 , TraesCS4B02G130100 , TraesCS6A02G308600 , TraesCS3A02G231500 , TraesCS6B02G337300 , TraesCS7B02G095500 , TraesCS6B02G337300 , TraesCS7A02G492400 , TraesCS7A02G190600 , TraesCS6B02G337300 , TraesCS6B02G337300 , TraesCS6D02G287800 , TraesCS7B02G398100 , TraesCS7D02G191600 , TraesCS3B02G260700 , TraesCS3B02G260700 , TraesCS7D02G478800 , TraesCS7D02G478800
Populus PNT24321 , PNT24320 , PNT15934 , PNT15930 , PNT15932 , PNT15933


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G233700 glycosyl hydrolase family 3 protein, putative, expressed -
2 Sobic.007G050500 MYB family transcription factor, putative, expressed -
3 Sobic.001G144200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF581 domain containing protein, expressed -
4 Sobic.007G111700 glutathione S-transferase, C-terminal domain containing protein, expressed -
5 Sobic.002G158900 AMP-binding domain containing protein, expressed -
6 Sobic.001G355900 expressed protein -
7 Sobic.005G231300 thaumatin, putative, expressed -
8 Sobic.002G016400 monocopper oxidase, putative, expressed -
9 Sobic.001G402400 expressed protein -
10 Sobic.005G057000 Leucine Rich Repeat family protein, expressed -
11 Sobic.002G034301 - -
12 Sobic.003G052100 receptor-like protein kinase 2 precursor, putative, expressed -
13 Sobic.003G420100 RNA recognition motif containing protein, putative, expressed K13207: CUGBP, BRUNOL, CUG-BP- and ETR3-like factor
14 Sobic.001G267100 "domain confirmed by Pfam database, expressed in leaf, flower, stem and root, expression induced by BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed K13946: AUX1, auxin influx carrier (AUX1 LAX family)
15 Sobic.007G208100 heavy metal-associated domain containing protein, expressed -
16 Sobic.004G263700 expressed protein -
17 Sobic.010G177300 receptor-like protein kinase 2 precursor, putative, expressed -
18 Sobic.009G079900 endoglucanase precursor, putative, expressed -
19 Sobic.003G296500 leucine rich repeat family protein, putative, expressed -
20 Sobic.001G514300 Glutathione S-transferase("PubMedID : 26759170,PubMedID : 24597475")@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase


Gene co-expression network
sample Sobic005G025900 Sobic005G025900 Sobic004G233700 Sobic004G233700 Sobic005G025900--Sobic004G233700 Sobic007G050500 Sobic007G050500 Sobic005G025900--Sobic007G050500 Sobic001G144200 Sobic001G144200 Sobic005G025900--Sobic001G144200 Sobic007G111700 Sobic007G111700 Sobic005G025900--Sobic007G111700 Sobic002G158900 Sobic002G158900 Sobic005G025900--Sobic002G158900 Sobic001G355900 Sobic001G355900 Sobic005G025900--Sobic001G355900 Sobic005G231300 Sobic005G231300 Sobic005G025900--Sobic005G231300 Sobic002G016400 Sobic002G016400 Sobic005G025900--Sobic002G016400 Sobic001G402400 Sobic001G402400 Sobic005G025900--Sobic001G402400 Sobic009G208900 Sobic009G208900 Sobic004G233700--Sobic009G208900 Sobic006G105600 Sobic006G105600 Sobic004G233700--Sobic006G105600 Sobic004G233700--Sobic005G025900 Sobic003G420100 Sobic003G420100 Sobic004G233700--Sobic003G420100 Sobic002G142200 Sobic002G142200 Sobic004G233700--Sobic002G142200 Sobic005G144600 Sobic005G144600 Sobic004G233700--Sobic005G144600 Sobic007G113300 Sobic007G113300 Sobic004G233700--Sobic007G113300 Sobic007G168900 Sobic007G168900 Sobic004G233700--Sobic007G168900 Sobic002G296000 Sobic002G296000 Sobic004G233700--Sobic002G296000 Sobic007G050500--Sobic002G016400 Sobic005G098400 Sobic005G098400 Sobic007G050500--Sobic005G098400 Sobic001G267100 Sobic001G267100 Sobic007G050500--Sobic001G267100 Sobic002G278200 Sobic002G278200 Sobic007G050500--Sobic002G278200 Sobic001G305300 Sobic001G305300 Sobic007G050500--Sobic001G305300 Sobic007G120301 Sobic007G120301 Sobic007G050500--Sobic007G120301 Sobic007G050500--Sobic005G025900 Sobic001G345200 Sobic001G345200 Sobic007G050500--Sobic001G345200 Sobic007G050500--Sobic007G111700 Sobic009G206500 Sobic009G206500 Sobic001G144200--Sobic009G206500 Sobic010G042600 Sobic010G042600 Sobic001G144200--Sobic010G042600 Sobic010G067800 Sobic010G067800 Sobic001G144200--Sobic010G067800 Sobic001G144200--Sobic005G025900 Sobic002G275500 Sobic002G275500 Sobic001G144200--Sobic002G275500 Sobic002G191000 Sobic002G191000 Sobic001G144200--Sobic002G191000 Sobic004G271500 Sobic004G271500 Sobic001G144200--Sobic004G271500 Sobic007G040301 Sobic007G040301 Sobic001G144200--Sobic007G040301 Sobic003G118100 Sobic003G118100 Sobic001G144200--Sobic003G118100 Sobic008G170400 Sobic008G170400 Sobic007G111700--Sobic008G170400 Sobic007G111700--Sobic002G016400 Sobic007G111700--Sobic005G098400 Sobic007G111700--Sobic007G050500 Sobic007G111700--Sobic005G025900 Sobic007G111700--Sobic001G345200 Sobic002G034301 Sobic002G034301 Sobic007G111700--Sobic002G034301 Sobic007G202100 Sobic007G202100 Sobic007G111700--Sobic007G202100 Sobic003G419600 Sobic003G419600 Sobic007G111700--Sobic003G419600 Sobic008G099100 Sobic008G099100 Sobic002G158900--Sobic008G099100 Sobic001G514300 Sobic001G514300 Sobic002G158900--Sobic001G514300 Sobic002G158900--Sobic005G231300 Sobic003G083600 Sobic003G083600 Sobic002G158900--Sobic003G083600 Sobic002G158900--Sobic004G271500 Sobic003G082800 Sobic003G082800 Sobic002G158900--Sobic003G082800 Sobic009G079900 Sobic009G079900 Sobic002G158900--Sobic009G079900 Sobic002G158900--Sobic005G025900 Sobic002G158900--Sobic001G144200 Sobic001G355900--Sobic005G025900 Sobic001G355900--Sobic007G111700 Sobic001G355900--Sobic004G233700 Sobic010G007000 Sobic010G007000 Sobic001G355900--Sobic010G007000 Sobic001G355900--Sobic001G267100 Sobic001G355900--Sobic007G050500 Sobic001G355900--Sobic008G170400 Sobic005G091100 Sobic005G091100 Sobic001G355900--Sobic005G091100 Sobic001G355900--Sobic002G016400 Sobic005G231300--Sobic001G514300 Sobic005G231300--Sobic003G083600 Sobic005G231300--Sobic009G079900 Sobic005G231300--Sobic008G099100 Sobic007G208100 Sobic007G208100 Sobic005G231300--Sobic007G208100 Sobic006G030200 Sobic006G030200 Sobic005G231300--Sobic006G030200 Sobic001G314000 Sobic001G314000 Sobic005G231300--Sobic001G314000 Sobic008G077300 Sobic008G077300 Sobic005G231300--Sobic008G077300 Sobic003G151900 Sobic003G151900 Sobic005G231300--Sobic003G151900 Sobic002G016400--Sobic005G098400 Sobic003G418300 Sobic003G418300 Sobic002G016400--Sobic003G418300 Sobic002G016400--Sobic007G050500 Sobic002G016400--Sobic001G305300 Sobic002G016400--Sobic001G345200 Sobic002G016400--Sobic007G208100 Sobic006G149300 Sobic006G149300 Sobic002G016400--Sobic006G149300 Sobic001G382700 Sobic001G382700 Sobic002G016400--Sobic001G382700 Sobic002G016400--Sobic008G170400 Sobic003G270400 Sobic003G270400 Sobic001G402400--Sobic003G270400 Sobic003G052100 Sobic003G052100 Sobic001G402400--Sobic003G052100 Sobic001G402400--Sobic002G275500 Sobic003G296500 Sobic003G296500 Sobic001G402400--Sobic003G296500 Sobic010G220300 Sobic010G220300 Sobic001G402400--Sobic010G220300 Sobic008G014700 Sobic008G014700 Sobic001G402400--Sobic008G014700 Sobic005G057000 Sobic005G057000 Sobic001G402400--Sobic005G057000 Sobic002G376100 Sobic002G376100 Sobic001G402400--Sobic002G376100 Sobic006G009500 Sobic006G009500 Sobic001G402400--Sobic006G009500
Octagon: transcription factors


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