Gene annotation
Transcriptome id Sobic.002G225200.1
Synonym Sb02g026580
Functional annotation expressed protein
UniProt C5X2A8
Pfam -
Panther DB PTHR32011 PTHR32011:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G67020 : -
RAP-DB (Rice) LOC_Os09g28340.1 : expressed protein
MaizeGDB (Corn) Zm00025a005421 , Zm00025a030642 , Zm00025a014058 , Zm00025a047247
Brachypodium KQJ90511 , KQJ98636
Barley HORVU5Hr1G068280.1
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G115200 expressed protein -
2 Sobic.005G047100 actin, putative, expressed K10355: actin, other eukaryote
3 Sobic.003G121000 peroxidase precursor, putative, expressed K00430: peroxidase
4 Sobic.005G052500 "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed K13946: AUX1, auxin influx carrier (AUX1 LAX family)
5 Sobic.010G022500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed -
6 Sobic.003G247600 serine/threonine-protein kinase, putative, expressed -
7 Sobic.008G113900 AGAP002737-PA, putative, expressed -
8 Sobic.003G321400 plastocyanin-like domain containing protein, putative, expressed -
9 Sobic.001G521300 expressed protein -
10 Sobic.008G077300 expressed protein -
11 Sobic.004G297950 - -
12 Sobic.001G156500 AGC_PVPK_like_kin82y.9 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
13 Sobic.007G208100 heavy metal-associated domain containing protein, expressed -
14 Sobic.002G034301 - -
15 Sobic.003G269100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AWPM-19-like membrane family protein, putative, expressed -
16 Sobic.001G264400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hsp20/alpha crystallin family protein, putative, expressed -
17 Sobic.002G368901 - -
18 Sobic.003G420100 RNA recognition motif containing protein, putative, expressed K13207: CUGBP, BRUNOL, CUG-BP- and ETR3-like factor
19 Sobic.001G484000 hydrolase, alpha/beta fold family protein, putative, expressed -
20 Sobic.009G250100 extra-large G-protein-related, putative, expressed -


Gene co-expression network
sample Sobic002G225200 Sobic002G225200 Sobic003G115200 Sobic003G115200 Sobic002G225200--Sobic003G115200 Sobic005G047100 Sobic005G047100 Sobic002G225200--Sobic005G047100 Sobic003G121000 Sobic003G121000 Sobic002G225200--Sobic003G121000 Sobic005G052500 Sobic005G052500 Sobic002G225200--Sobic005G052500 Sobic010G022500 Sobic010G022500 Sobic002G225200--Sobic010G022500 Sobic003G247600 Sobic003G247600 Sobic002G225200--Sobic003G247600 Sobic008G113900 Sobic008G113900 Sobic002G225200--Sobic008G113900 Sobic003G321400 Sobic003G321400 Sobic002G225200--Sobic003G321400 Sobic001G521300 Sobic001G521300 Sobic002G225200--Sobic001G521300 Sobic003G115200--Sobic003G321400 Sobic003G000200 Sobic003G000200 Sobic003G115200--Sobic003G000200 Sobic003G269100 Sobic003G269100 Sobic003G115200--Sobic003G269100 Sobic001G261460 Sobic001G261460 Sobic003G115200--Sobic001G261460 Sobic010G047600 Sobic010G047600 Sobic003G115200--Sobic010G047600 Sobic009G221800 Sobic009G221800 Sobic003G115200--Sobic009G221800 Sobic010G014400 Sobic010G014400 Sobic003G115200--Sobic010G014400 Sobic009G130300 Sobic009G130300 Sobic003G115200--Sobic009G130300 Sobic001G514200 Sobic001G514200 Sobic003G115200--Sobic001G514200 Sobic004G297950 Sobic004G297950 Sobic005G047100--Sobic004G297950 Sobic005G047100--Sobic003G247600 Sobic007G225400 Sobic007G225400 Sobic005G047100--Sobic007G225400 Sobic004G170900 Sobic004G170900 Sobic005G047100--Sobic004G170900 Sobic005G047100--Sobic001G521300 Sobic005G047100--Sobic003G321400 Sobic004G170800 Sobic004G170800 Sobic005G047100--Sobic004G170800 Sobic003G135400 Sobic003G135400 Sobic005G047100--Sobic003G135400 Sobic003G420100 Sobic003G420100 Sobic005G047100--Sobic003G420100 Sobic002G154600 Sobic002G154600 Sobic003G121000--Sobic002G154600 Sobic003G121000--Sobic001G514200 Sobic008G135300 Sobic008G135300 Sobic003G121000--Sobic008G135300 Sobic003G121100 Sobic003G121100 Sobic003G121000--Sobic003G121100 Sobic003G183300 Sobic003G183300 Sobic003G121000--Sobic003G183300 Sobic003G408900 Sobic003G408900 Sobic003G121000--Sobic003G408900 Sobic003G121000--Sobic010G047600 Sobic003G121000--Sobic001G261460 Sobic007G090460 Sobic007G090460 Sobic003G121000--Sobic007G090460 Sobic001G484000 Sobic001G484000 Sobic005G052500--Sobic001G484000 Sobic001G046800 Sobic001G046800 Sobic005G052500--Sobic001G046800 Sobic005G052500--Sobic003G269100 Sobic010G106700 Sobic010G106700 Sobic005G052500--Sobic010G106700 Sobic005G052500--Sobic010G047600 Sobic003G352700 Sobic003G352700 Sobic005G052500--Sobic003G352700 Sobic005G052500--Sobic004G297950 Sobic002G053900 Sobic002G053900 Sobic005G052500--Sobic002G053900 Sobic005G052500--Sobic003G321400 Sobic002G226500 Sobic002G226500 Sobic010G022500--Sobic002G226500 Sobic010G022500--Sobic009G221800 Sobic001G264400 Sobic001G264400 Sobic010G022500--Sobic001G264400 Sobic010G022500--Sobic008G113900 Sobic010G022500--Sobic003G121000 Sobic001G264300 Sobic001G264300 Sobic010G022500--Sobic001G264300 Sobic010G022500--Sobic003G321400 Sobic010G022500--Sobic003G115200 Sobic010G022500--Sobic009G130300 Sobic003G247600--Sobic005G047100 Sobic003G247600--Sobic003G420100 Sobic004G066900 Sobic004G066900 Sobic003G247600--Sobic004G066900 Sobic007G208100 Sobic007G208100 Sobic003G247600--Sobic007G208100 Sobic008G141200 Sobic008G141200 Sobic003G247600--Sobic008G141200 Sobic003G247600--Sobic003G135400 Sobic003G052900 Sobic003G052900 Sobic003G247600--Sobic003G052900 Sobic003G345700 Sobic003G345700 Sobic003G247600--Sobic003G345700 Sobic006G119000 Sobic006G119000 Sobic003G247600--Sobic006G119000 Sobic006G030200 Sobic006G030200 Sobic008G113900--Sobic006G030200 Sobic005G231300 Sobic005G231300 Sobic008G113900--Sobic005G231300 Sobic001G514300 Sobic001G514300 Sobic008G113900--Sobic001G514300 Sobic008G113900--Sobic002G226500 Sobic008G114000 Sobic008G114000 Sobic008G113900--Sobic008G114000 Sobic008G113900--Sobic008G135300 Sobic008G113900--Sobic007G208100 Sobic003G083600 Sobic003G083600 Sobic008G113900--Sobic003G083600 Sobic008G113900--Sobic003G183300 Sobic003G321400--Sobic003G269100 Sobic003G321400--Sobic003G115200 Sobic003G321400--Sobic009G221800 Sobic003G321400--Sobic010G047600 Sobic003G321400--Sobic003G000200 Sobic003G078900 Sobic003G078900 Sobic003G321400--Sobic003G078900 Sobic003G321400--Sobic001G261460 Sobic003G321400--Sobic001G264400 Sobic001G099600 Sobic001G099600 Sobic003G321400--Sobic001G099600 Sobic001G521300--Sobic010G047600 Sobic001G521300--Sobic005G047100 Sobic001G521300--Sobic003G321400 Sobic001G521300--Sobic003G269100 Sobic003G250700 Sobic003G250700 Sobic001G521300--Sobic003G250700 Sobic001G521300--Sobic001G261460 Sobic001G521300--Sobic001G046800 Sobic001G156500 Sobic001G156500 Sobic001G521300--Sobic001G156500 Sobic001G521300--Sobic006G119000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.