Gene annotation
Transcriptome id Sobic.002G270200.1
Synonym PP2-A13, Sb02g030400, AtPP2-A13
Functional annotation OsFBX339 - F-box domain containing protein, expressed
UniProt C5X633
Pfam PF00646 PF14299
Panther DB PTHR31960 PTHR31960:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G61060 : phloem protein 2-A13
RAP-DB (Rice) LOC_Os09g35680.1 : OsFBX339 - F-box domain containing protein, expressed
MaizeGDB (Corn) Zm00025a047719
Brachypodium -
Barley -
Wheat TraesCS5A02G312700 , TraesCS5B02G313700 , TraesCS5D02G319500
Populus -


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cDNA sequences
Sobic.002G270200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G167600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
2 Sobic.001G180900 secretory carrier-associated membrane protein 4, putative, expressed -
3 Sobic.003G281900 regulator of chromosome condensation, putative, expressed -
4 Sobic.007G047700 no apical meristem protein, putative, expressed -
5 Sobic.009G184700 zinc finger C3HC4 type family protein, putative, expressed K10695: E3 ubiquitin-protein ligase RNF1/2
6 Sobic.004G267300 bg55, putative, expressed -
7 Sobic.003G272400 DUF292 domain containing protein, expressed -
8 Sobic.002G424000 transcription factor, putative, expressed K14431: transcription factor TGA
9 Sobic.005G104400 - -
10 Sobic.001G463000 syntaxin 6, N-terminal domain containing protein, expressed -
11 Sobic.001G095500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transcription factor(PubMedID : 30367619)@WRKY121, expressed -
12 Sobic.008G123500 auxilin, putative, expressed -
13 Sobic.009G134600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@gibberellin receptor GID1L2, putative, expressed K14493: gibberellin receptor GID1
14 Sobic.001G516100 protein kinase family protein, putative, expressed K14500: BR-signaling kinase
15 Sobic.001G035500 expressed protein -
16 Sobic.003G119800 Expressed in older stem(PubMedID : 28649278)@no apical meristem protein, putative, expressed -
17 Sobic.004G031600 cyclin-T1-1, putative, expressed K15188: cyclin T
18 Sobic.003G056500 staphylococcal nuclease homologue, putative, expressed -
19 Sobic.003G433100 MAC/Perforin domain containing protein, putative, expressed -
20 Sobic.004G274400 GCN5-related N-acetyltransferase, putative, expressed -


Gene co-expression network
sample Sobic002G270200 Sobic002G270200 Sobic009G167600 Sobic009G167600 Sobic002G270200--Sobic009G167600 Sobic001G180900 Sobic001G180900 Sobic002G270200--Sobic001G180900 Sobic003G281900 Sobic003G281900 Sobic002G270200--Sobic003G281900 Sobic007G047700 Sobic007G047700 Sobic002G270200--Sobic007G047700 Sobic009G184700 Sobic009G184700 Sobic002G270200--Sobic009G184700 Sobic004G267300 Sobic004G267300 Sobic002G270200--Sobic004G267300 Sobic003G272400 Sobic003G272400 Sobic002G270200--Sobic003G272400 Sobic002G424000 Sobic002G424000 Sobic002G270200--Sobic002G424000 Sobic005G104400 Sobic005G104400 Sobic002G270200--Sobic005G104400 Sobic003G119800 Sobic003G119800 Sobic009G167600--Sobic003G119800 Sobic009G167600--Sobic005G104400 Sobic003G044200 Sobic003G044200 Sobic009G167600--Sobic003G044200 Sobic006G218700 Sobic006G218700 Sobic009G167600--Sobic006G218700 Sobic002G400200 Sobic002G400200 Sobic009G167600--Sobic002G400200 Sobic008G025900 Sobic008G025900 Sobic009G167600--Sobic008G025900 Sobic010G025300 Sobic010G025300 Sobic009G167600--Sobic010G025300 Sobic003G433100 Sobic003G433100 Sobic009G167600--Sobic003G433100 Sobic009G134600 Sobic009G134600 Sobic009G167600--Sobic009G134600 Sobic006G034000 Sobic006G034000 Sobic001G180900--Sobic006G034000 Sobic004G234900 Sobic004G234900 Sobic001G180900--Sobic004G234900 Sobic002G378800 Sobic002G378800 Sobic001G180900--Sobic002G378800 Sobic009G079300 Sobic009G079300 Sobic001G180900--Sobic009G079300 Sobic009G126900 Sobic009G126900 Sobic001G180900--Sobic009G126900 Sobic004G274400 Sobic004G274400 Sobic001G180900--Sobic004G274400 Sobic006G225600 Sobic006G225600 Sobic001G180900--Sobic006G225600 Sobic008G110600 Sobic008G110600 Sobic001G180900--Sobic008G110600 Sobic003G126300 Sobic003G126300 Sobic001G180900--Sobic003G126300 Sobic003G281900--Sobic003G272400 Sobic009G097300 Sobic009G097300 Sobic003G281900--Sobic009G097300 Sobic002G306000 Sobic002G306000 Sobic003G281900--Sobic002G306000 Sobic003G281900--Sobic003G126300 Sobic004G353600 Sobic004G353600 Sobic003G281900--Sobic004G353600 Sobic003G397500 Sobic003G397500 Sobic003G281900--Sobic003G397500 Sobic009G213000 Sobic009G213000 Sobic003G281900--Sobic009G213000 Sobic003G281900--Sobic009G079300 Sobic003G281900--Sobic007G047700 Sobic003G036800 Sobic003G036800 Sobic007G047700--Sobic003G036800 Sobic008G123500 Sobic008G123500 Sobic007G047700--Sobic008G123500 Sobic004G002100 Sobic004G002100 Sobic007G047700--Sobic004G002100 Sobic007G047700--Sobic009G184700 Sobic001G095500 Sobic001G095500 Sobic007G047700--Sobic001G095500 Sobic001G440600 Sobic001G440600 Sobic007G047700--Sobic001G440600 Sobic007G047700--Sobic003G281900 Sobic001G173900 Sobic001G173900 Sobic007G047700--Sobic001G173900 Sobic003G195500 Sobic003G195500 Sobic007G047700--Sobic003G195500 Sobic009G184700--Sobic007G047700 Sobic005G019200 Sobic005G019200 Sobic009G184700--Sobic005G019200 Sobic009G184700--Sobic008G123500 Sobic002G400900 Sobic002G400900 Sobic009G184700--Sobic002G400900 Sobic005G143400 Sobic005G143400 Sobic009G184700--Sobic005G143400 Sobic009G121100 Sobic009G121100 Sobic009G184700--Sobic009G121100 Sobic001G035500 Sobic001G035500 Sobic009G184700--Sobic001G035500 Sobic004G048000 Sobic004G048000 Sobic009G184700--Sobic004G048000 Sobic004G027100 Sobic004G027100 Sobic009G184700--Sobic004G027100 Sobic009G137800 Sobic009G137800 Sobic004G267300--Sobic009G137800 Sobic007G134600 Sobic007G134600 Sobic004G267300--Sobic007G134600 Sobic004G267300--Sobic008G025900 Sobic003G056100 Sobic003G056100 Sobic004G267300--Sobic003G056100 Sobic001G351700 Sobic001G351700 Sobic004G267300--Sobic001G351700 Sobic009G172400 Sobic009G172400 Sobic004G267300--Sobic009G172400 Sobic002G324200 Sobic002G324200 Sobic004G267300--Sobic002G324200 Sobic010G056000 Sobic010G056000 Sobic004G267300--Sobic010G056000 Sobic004G132150 Sobic004G132150 Sobic004G267300--Sobic004G132150 Sobic003G272400--Sobic004G353600 Sobic003G272400--Sobic003G281900 Sobic003G252400 Sobic003G252400 Sobic003G272400--Sobic003G252400 Sobic003G272400--Sobic002G306000 Sobic010G260300 Sobic010G260300 Sobic003G272400--Sobic010G260300 Sobic003G272400--Sobic003G126300 Sobic006G207900 Sobic006G207900 Sobic003G272400--Sobic006G207900 Sobic001G110900 Sobic001G110900 Sobic003G272400--Sobic001G110900 Sobic004G309600 Sobic004G309600 Sobic003G272400--Sobic004G309600 Sobic004G006200 Sobic004G006200 Sobic002G424000--Sobic004G006200 Sobic002G424000--Sobic003G433100 Sobic007G024700 Sobic007G024700 Sobic002G424000--Sobic007G024700 Sobic009G207000 Sobic009G207000 Sobic002G424000--Sobic009G207000 Sobic003G352600 Sobic003G352600 Sobic002G424000--Sobic003G352600 Sobic001G137100 Sobic001G137100 Sobic002G424000--Sobic001G137100 Sobic002G130800 Sobic002G130800 Sobic002G424000--Sobic002G130800 Sobic002G132000 Sobic002G132000 Sobic002G424000--Sobic002G132000 Sobic001G390800 Sobic001G390800 Sobic002G424000--Sobic001G390800 Sobic001G262700 Sobic001G262700 Sobic005G104400--Sobic001G262700 Sobic005G104400--Sobic010G025300 Sobic010G223700 Sobic010G223700 Sobic005G104400--Sobic010G223700 Sobic005G104400--Sobic002G400200 Sobic010G089100 Sobic010G089100 Sobic005G104400--Sobic010G089100 Sobic005G104400--Sobic009G167600 Sobic004G091100 Sobic004G091100 Sobic005G104400--Sobic004G091100 Sobic007G020600 Sobic007G020600 Sobic005G104400--Sobic007G020600 Sobic002G427050 Sobic002G427050 Sobic005G104400--Sobic002G427050
Octagon: transcription factors


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