Gene annotation
Transcriptome id Sobic.002G296800.3
Synonym ALIS5, Sb02g032780
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
cell cycle control protein, putative, expressed
UniProt A0A1B6QE51
Pfam PF03381
Panther DB PTHR10926 PTHR10926:SF27
NCBI CDD KOG2952; Cell cycle control protein
KEGG Orthology -
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT1G79450 : ALA-interacting subunit 5
RAP-DB (Rice) LOC_Os09g38768.2 : cell cycle control protein, putative, expressed
MaizeGDB (Corn) Zm00025a044268 , Zm00025a047873
Brachypodium -
Barley HORVU1Hr1G081400.10 , HORVU1Hr1G081400.11 , HORVU1Hr1G081400.4 , HORVU1Hr1G081400.6 , HORVU1Hr1G081400.1 , HORVU1Hr1G081400.8 , HORVU1Hr1G081400.5 , HORVU1Hr1G081400.7 , HORVU1Hr1G081400.3 , HORVU1Hr1G081400.9 , HORVU1Hr1G081400.2 , HORVU6Hr1G093390.4 , HORVU6Hr1G093390.1 , HORVU6Hr1G093390.2 , HORVU6Hr1G093390.3
Wheat TraesCS1A02G350000 , TraesCS1A02G350000 , TraesCS1A02G350000 , TraesCS1B02G364300 , TraesCS1D02G352700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G308900 expressed protein -
2 Sobic.002G377400 cysteine-rich receptor-like protein kinase 16 precursor, putative, expressed K04730: interleukin-1 receptor-associated kinase 1
3 Sobic.010G249600 macrophage migration inhibitory factor, putative, expressed -
4 Sobic.007G185000 leucine rich repeat protein, putative, expressed -
5 Sobic.003G364550 - -
6 Sobic.003G243750 - -
7 Sobic.005G090700 - -
8 Sobic.010G133450 - -
9 Sobic.009G055000 - -
10 Sobic.003G262500 OsPOP3 - Putative Prolyl Oligopeptidase homologue, expressed -
11 Sobic.003G336600 homeobox domain containing protein, expressed -
12 Sobic.002G051500 expressed protein -
13 Sobic.003G440500 YGGT family protein, putative, expressed K02221: YggT family protein
14 Sobic.009G069400 - -
15 Sobic.002G288500 serine/threonine kinase, putative, expressed -
16 Sobic.003G271000 - -
17 Sobic.004G224000 - -
18 Sobic.003G184600 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
19 Sobic.010G213100 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
20 Sobic.002G398600 cytochrome P450 72A1, putative, expressed K15639: CYP734A1, PHYB activation tagged suppressor 1


Gene co-expression network
sample Sobic002G296800 Sobic002G296800 Sobic003G308900 Sobic003G308900 Sobic002G296800--Sobic003G308900 Sobic002G377400 Sobic002G377400 Sobic002G296800--Sobic002G377400 Sobic010G249600 Sobic010G249600 Sobic002G296800--Sobic010G249600 Sobic007G185000 Sobic007G185000 Sobic002G296800--Sobic007G185000 Sobic003G364550 Sobic003G364550 Sobic002G296800--Sobic003G364550 Sobic003G243750 Sobic003G243750 Sobic002G296800--Sobic003G243750 Sobic005G090700 Sobic005G090700 Sobic002G296800--Sobic005G090700 Sobic010G133450 Sobic010G133450 Sobic002G296800--Sobic010G133450 Sobic009G055000 Sobic009G055000 Sobic002G296800--Sobic009G055000 Sobic003G308900--Sobic002G377400 Sobic003G308900--Sobic007G185000 Sobic003G308900--Sobic010G249600 Sobic003G440500 Sobic003G440500 Sobic003G308900--Sobic003G440500 Sobic003G308900--Sobic002G296800 Sobic003G308900--Sobic005G090700 Sobic003G308900--Sobic003G243750 Sobic008G065700 Sobic008G065700 Sobic003G308900--Sobic008G065700 Sobic008G159800 Sobic008G159800 Sobic003G308900--Sobic008G159800 Sobic002G377400--Sobic003G308900 Sobic002G377400--Sobic007G185000 Sobic002G377400--Sobic003G440500 Sobic002G377400--Sobic003G243750 Sobic002G377400--Sobic010G249600 Sobic002G377400--Sobic002G296800 Sobic002G398600 Sobic002G398600 Sobic002G377400--Sobic002G398600 Sobic003G262500 Sobic003G262500 Sobic002G377400--Sobic003G262500 Sobic002G377400--Sobic008G065700 Sobic010G249600--Sobic003G440500 Sobic010G249600--Sobic002G398600 Sobic010G249600--Sobic002G377400 Sobic010G249600--Sobic003G308900 Sobic008G016800 Sobic008G016800 Sobic010G249600--Sobic008G016800 Sobic009G223900 Sobic009G223900 Sobic010G249600--Sobic009G223900 Sobic002G085600 Sobic002G085600 Sobic010G249600--Sobic002G085600 Sobic004G224000 Sobic004G224000 Sobic010G249600--Sobic004G224000 Sobic001G191300 Sobic001G191300 Sobic010G249600--Sobic001G191300 Sobic007G185000--Sobic002G377400 Sobic007G185000--Sobic003G308900 Sobic007G185000--Sobic003G243750 Sobic007G185000--Sobic003G440500 Sobic009G203600 Sobic009G203600 Sobic007G185000--Sobic009G203600 Sobic007G165100 Sobic007G165100 Sobic007G185000--Sobic007G165100 Sobic007G226000 Sobic007G226000 Sobic007G185000--Sobic007G226000 Sobic009G047033 Sobic009G047033 Sobic007G185000--Sobic009G047033 Sobic007G185000--Sobic010G249600 Sobic001G336600 Sobic001G336600 Sobic003G364550--Sobic001G336600 Sobic005G135300 Sobic005G135300 Sobic003G364550--Sobic005G135300 Sobic005G068400 Sobic005G068400 Sobic003G364550--Sobic005G068400 Sobic008G131601 Sobic008G131601 Sobic003G364550--Sobic008G131601 Sobic002G051500 Sobic002G051500 Sobic003G364550--Sobic002G051500 Sobic006G088450 Sobic006G088450 Sobic003G364550--Sobic006G088450 Sobic002G288500 Sobic002G288500 Sobic003G364550--Sobic002G288500 Sobic003G364550--Sobic002G296800 Sobic010G025200 Sobic010G025200 Sobic003G364550--Sobic010G025200 Sobic003G243750--Sobic007G185000 Sobic003G243750--Sobic009G203600 Sobic003G243750--Sobic002G377400 Sobic003G333150 Sobic003G333150 Sobic003G243750--Sobic003G333150 Sobic003G130650 Sobic003G130650 Sobic003G243750--Sobic003G130650 Sobic008G045300 Sobic008G045300 Sobic003G243750--Sobic008G045300 Sobic003G243750--Sobic003G308900 Sobic003G243750--Sobic010G025200 Sobic006G144900 Sobic006G144900 Sobic003G243750--Sobic006G144900 Sobic005G090700--Sobic003G308900 Sobic005G090700--Sobic008G159800 Sobic005G090700--Sobic010G249600 Sobic005G090700--Sobic002G377400 Sobic003G336600 Sobic003G336600 Sobic005G090700--Sobic003G336600 Sobic009G112500 Sobic009G112500 Sobic005G090700--Sobic009G112500 Sobic005G090700--Sobic002G296800 Sobic005G014400 Sobic005G014400 Sobic005G090700--Sobic005G014400 Sobic006G268100 Sobic006G268100 Sobic005G090700--Sobic006G268100 Sobic003G174500 Sobic003G174500 Sobic010G133450--Sobic003G174500 Sobic010G129100 Sobic010G129100 Sobic010G133450--Sobic010G129100 Sobic009G094200 Sobic009G094200 Sobic010G133450--Sobic009G094200 Sobic009G088300 Sobic009G088300 Sobic010G133450--Sobic009G088300 Sobic003G263900 Sobic003G263900 Sobic010G133450--Sobic003G263900 Sobic001G261452 Sobic001G261452 Sobic010G133450--Sobic001G261452 Sobic004G127600 Sobic004G127600 Sobic010G133450--Sobic004G127600 Sobic003G410000 Sobic003G410000 Sobic010G133450--Sobic003G410000 Sobic006G255200 Sobic006G255200 Sobic010G133450--Sobic006G255200 Sobic009G055000--Sobic002G296800 Sobic006G082100 Sobic006G082100 Sobic009G055000--Sobic006G082100 Sobic009G055000--Sobic003G364550 Sobic009G055000--Sobic003G262500 Sobic002G382400 Sobic002G382400 Sobic009G055000--Sobic002G382400 Sobic009G055000--Sobic002G377400 Sobic005G165032 Sobic005G165032 Sobic009G055000--Sobic005G165032 Sobic002G181500 Sobic002G181500 Sobic009G055000--Sobic002G181500 Sobic002G187900 Sobic002G187900 Sobic009G055000--Sobic002G187900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.