Gene annotation
Transcriptome id Sobic.003G440500.1
Synonym YLMG3, CCB3, atylmg3, Sb03g047020
Functional annotation YGGT family protein, putative, expressed
UniProt A0A1B6Q8E9
Pfam PF02325
Panther DB PTHR33219 PTHR33219:SF1
NCBI CDD -
KEGG Orthology K02221; YggT family protein
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT5G36120 : cofactor assembly, complex C (B6F)
RAP-DB (Rice) LOC_Os01g73540.1 : YGGT family protein, putative, expressed
MaizeGDB (Corn) Zm00025a039061
Brachypodium -
Barley HORVU3Hr1G113070.3 , HORVU3Hr1G113070.2 , HORVU3Hr1G113070.1
Wheat TraesCS3D02G524200 , TraesCSU02G053500 , TraesCS3A02G516500
Populus -


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cDNA sequences
Sobic.003G440500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G249600 macrophage migration inhibitory factor, putative, expressed -
2 Sobic.002G377400 cysteine-rich receptor-like protein kinase 16 precursor, putative, expressed K04730: interleukin-1 receptor-associated kinase 1
3 Sobic.009G223900 protein binding protein, putative, expressed -
4 Sobic.005G025400 CAMK_CAMK_like.42 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
5 Sobic.007G185000 leucine rich repeat protein, putative, expressed -
6 Sobic.010G242000 phytosulfokine receptor precursor, putative, expressed -
7 Sobic.003G308900 expressed protein -
8 Sobic.002G399000 expressed protein -
9 Sobic.009G181900 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
10 Sobic.001G350300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
11 Sobic.007G114650 - -
12 Sobic.002G085600 - -
13 Sobic.009G112500 lipase, putative, expressed -
14 Sobic.002G398600 cytochrome P450 72A1, putative, expressed K15639: CYP734A1, PHYB activation tagged suppressor 1
15 Sobic.008G159800 - -
16 Sobic.008G016800 zinc finger DHHC domain-containing protein, putative, expressed -
17 Sobic.004G327200 pheophorbide a oxygenase, chloroplast precursor, putative, expressed -
18 Sobic.007G226000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
19 Sobic.002G001500 pentatricopeptide containing protein, putative, expressed -
20 Sobic.001G191300 bile acid sodium symporter family protein, putative, expressed K03453: bile acid:Na+ symporter, BASS family


Gene co-expression network
sample Sobic003G440500 Sobic003G440500 Sobic010G249600 Sobic010G249600 Sobic003G440500--Sobic010G249600 Sobic002G377400 Sobic002G377400 Sobic003G440500--Sobic002G377400 Sobic009G223900 Sobic009G223900 Sobic003G440500--Sobic009G223900 Sobic005G025400 Sobic005G025400 Sobic003G440500--Sobic005G025400 Sobic007G185000 Sobic007G185000 Sobic003G440500--Sobic007G185000 Sobic010G242000 Sobic010G242000 Sobic003G440500--Sobic010G242000 Sobic003G308900 Sobic003G308900 Sobic003G440500--Sobic003G308900 Sobic002G399000 Sobic002G399000 Sobic003G440500--Sobic002G399000 Sobic009G181900 Sobic009G181900 Sobic003G440500--Sobic009G181900 Sobic010G249600--Sobic003G440500 Sobic002G398600 Sobic002G398600 Sobic010G249600--Sobic002G398600 Sobic010G249600--Sobic002G377400 Sobic010G249600--Sobic003G308900 Sobic008G016800 Sobic008G016800 Sobic010G249600--Sobic008G016800 Sobic010G249600--Sobic009G223900 Sobic002G085600 Sobic002G085600 Sobic010G249600--Sobic002G085600 Sobic004G224000 Sobic004G224000 Sobic010G249600--Sobic004G224000 Sobic001G191300 Sobic001G191300 Sobic010G249600--Sobic001G191300 Sobic002G377400--Sobic003G308900 Sobic002G377400--Sobic007G185000 Sobic002G377400--Sobic003G440500 Sobic003G243750 Sobic003G243750 Sobic002G377400--Sobic003G243750 Sobic002G377400--Sobic010G249600 Sobic002G296800 Sobic002G296800 Sobic002G377400--Sobic002G296800 Sobic002G377400--Sobic002G398600 Sobic003G262500 Sobic003G262500 Sobic002G377400--Sobic003G262500 Sobic008G065700 Sobic008G065700 Sobic002G377400--Sobic008G065700 Sobic002G001500 Sobic002G001500 Sobic009G223900--Sobic002G001500 Sobic004G181000 Sobic004G181000 Sobic009G223900--Sobic004G181000 Sobic003G362800 Sobic003G362800 Sobic009G223900--Sobic003G362800 Sobic003G155800 Sobic003G155800 Sobic009G223900--Sobic003G155800 Sobic009G223900--Sobic002G398600 Sobic008G103400 Sobic008G103400 Sobic009G223900--Sobic008G103400 Sobic001G503700 Sobic001G503700 Sobic009G223900--Sobic001G503700 Sobic001G113400 Sobic001G113400 Sobic009G223900--Sobic001G113400 Sobic003G262600 Sobic003G262600 Sobic009G223900--Sobic003G262600 Sobic005G025400--Sobic010G242000 Sobic005G025400--Sobic003G440500 Sobic005G025400--Sobic002G399000 Sobic006G170800 Sobic006G170800 Sobic005G025400--Sobic006G170800 Sobic001G350300 Sobic001G350300 Sobic005G025400--Sobic001G350300 Sobic005G025400--Sobic009G223900 Sobic005G025400--Sobic002G085600 Sobic004G202750 Sobic004G202750 Sobic005G025400--Sobic004G202750 Sobic001G350800 Sobic001G350800 Sobic005G025400--Sobic001G350800 Sobic007G185000--Sobic002G377400 Sobic007G185000--Sobic003G308900 Sobic007G185000--Sobic003G243750 Sobic007G185000--Sobic003G440500 Sobic009G203600 Sobic009G203600 Sobic007G185000--Sobic009G203600 Sobic007G165100 Sobic007G165100 Sobic007G185000--Sobic007G165100 Sobic007G226000 Sobic007G226000 Sobic007G185000--Sobic007G226000 Sobic009G047033 Sobic009G047033 Sobic007G185000--Sobic009G047033 Sobic007G185000--Sobic010G249600 Sobic010G242000--Sobic005G025400 Sobic010G242000--Sobic006G170800 Sobic008G159800 Sobic008G159800 Sobic010G242000--Sobic008G159800 Sobic007G114650 Sobic007G114650 Sobic010G242000--Sobic007G114650 Sobic010G242000--Sobic002G399000 Sobic010G242000--Sobic003G440500 Sobic010G242000--Sobic001G350300 Sobic008G134500 Sobic008G134500 Sobic010G242000--Sobic008G134500 Sobic002G320700 Sobic002G320700 Sobic010G242000--Sobic002G320700 Sobic003G308900--Sobic002G377400 Sobic003G308900--Sobic007G185000 Sobic003G308900--Sobic010G249600 Sobic003G308900--Sobic003G440500 Sobic003G308900--Sobic002G296800 Sobic005G090700 Sobic005G090700 Sobic003G308900--Sobic005G090700 Sobic003G308900--Sobic003G243750 Sobic003G308900--Sobic008G065700 Sobic003G308900--Sobic008G159800 Sobic002G399000--Sobic001G350300 Sobic004G350600 Sobic004G350600 Sobic002G399000--Sobic004G350600 Sobic001G104100 Sobic001G104100 Sobic002G399000--Sobic001G104100 Sobic002G399000--Sobic001G191300 Sobic002G399000--Sobic006G170800 Sobic002G399000--Sobic004G202750 Sobic004G305300 Sobic004G305300 Sobic002G399000--Sobic004G305300 Sobic003G118500 Sobic003G118500 Sobic002G399000--Sobic003G118500 Sobic002G399000--Sobic005G025400 Sobic009G181900--Sobic002G399000 Sobic009G181900--Sobic007G114650 Sobic009G112500 Sobic009G112500 Sobic009G181900--Sobic009G112500 Sobic009G181900--Sobic003G440500 Sobic009G181900--Sobic003G262500 Sobic009G181900--Sobic005G025400 Sobic001G410300 Sobic001G410300 Sobic009G181900--Sobic001G410300 Sobic010G278400 Sobic010G278400 Sobic009G181900--Sobic010G278400 Sobic009G181900--Sobic001G350300
Octagon: transcription factors


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