Gene annotation
Transcriptome id Sobic.003G308900.2,Sobic.003G308900.1
Synonym Sb03g035740
Functional annotation expressed protein
UniProt A0A1W0VZR2 , A0A1W0VZR7
Pfam -
Panther DB PTHR31218 PTHR31218:SF17
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT1G16520 : -
RAP-DB (Rice) LOC_Os01g56235.1 : expressed protein
MaizeGDB (Corn) Zm00025a027412
Brachypodium PNT72930 , PNT72929 , KQK09941
Barley HORVU3Hr1G074720.6 , HORVU3Hr1G074720.5 , HORVU3Hr1G074720.4 , HORVU3Hr1G074720.3 , HORVU3Hr1G074720.2 , HORVU3Hr1G074720.1
Wheat TraesCS3A02G298500 , TraesCS3D02G303400 , TraesCS3B02G338000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G377400 cysteine-rich receptor-like protein kinase 16 precursor, putative, expressed K04730: interleukin-1 receptor-associated kinase 1
2 Sobic.007G185000 leucine rich repeat protein, putative, expressed -
3 Sobic.010G249600 macrophage migration inhibitory factor, putative, expressed -
4 Sobic.003G440500 YGGT family protein, putative, expressed K02221: YggT family protein
5 Sobic.002G296800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cell cycle control protein, putative, expressed -
6 Sobic.005G090700 - -
7 Sobic.003G243750 - -
8 Sobic.008G065700 RNA recognition motif containing protein, expressed -
9 Sobic.008G159800 - -
10 Sobic.010G213100 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
11 Sobic.009G047033 - -
12 Sobic.010G265100 - -
13 Sobic.003G336600 homeobox domain containing protein, expressed -
14 Sobic.003G262500 OsPOP3 - Putative Prolyl Oligopeptidase homologue, expressed -
15 Sobic.003G091900 - -
16 Sobic.002G398600 cytochrome P450 72A1, putative, expressed K15639: CYP734A1, PHYB activation tagged suppressor 1
17 Sobic.007G226000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
18 Sobic.003G271000 - -
19 Sobic.009G203600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Receptor-like protein kinase HSL1(PubMedID : 31721651)@receptor-like protein kinase 5 precursor, putative, expressed -
20 Sobic.007G165100 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G308900 Sobic003G308900 Sobic002G377400 Sobic002G377400 Sobic003G308900--Sobic002G377400 Sobic007G185000 Sobic007G185000 Sobic003G308900--Sobic007G185000 Sobic010G249600 Sobic010G249600 Sobic003G308900--Sobic010G249600 Sobic003G440500 Sobic003G440500 Sobic003G308900--Sobic003G440500 Sobic002G296800 Sobic002G296800 Sobic003G308900--Sobic002G296800 Sobic005G090700 Sobic005G090700 Sobic003G308900--Sobic005G090700 Sobic003G243750 Sobic003G243750 Sobic003G308900--Sobic003G243750 Sobic008G065700 Sobic008G065700 Sobic003G308900--Sobic008G065700 Sobic008G159800 Sobic008G159800 Sobic003G308900--Sobic008G159800 Sobic002G377400--Sobic003G308900 Sobic002G377400--Sobic007G185000 Sobic002G377400--Sobic003G440500 Sobic002G377400--Sobic003G243750 Sobic002G377400--Sobic010G249600 Sobic002G377400--Sobic002G296800 Sobic002G398600 Sobic002G398600 Sobic002G377400--Sobic002G398600 Sobic003G262500 Sobic003G262500 Sobic002G377400--Sobic003G262500 Sobic002G377400--Sobic008G065700 Sobic007G185000--Sobic002G377400 Sobic007G185000--Sobic003G308900 Sobic007G185000--Sobic003G243750 Sobic007G185000--Sobic003G440500 Sobic009G203600 Sobic009G203600 Sobic007G185000--Sobic009G203600 Sobic007G165100 Sobic007G165100 Sobic007G185000--Sobic007G165100 Sobic007G226000 Sobic007G226000 Sobic007G185000--Sobic007G226000 Sobic009G047033 Sobic009G047033 Sobic007G185000--Sobic009G047033 Sobic007G185000--Sobic010G249600 Sobic010G249600--Sobic003G440500 Sobic010G249600--Sobic002G398600 Sobic010G249600--Sobic002G377400 Sobic010G249600--Sobic003G308900 Sobic008G016800 Sobic008G016800 Sobic010G249600--Sobic008G016800 Sobic009G223900 Sobic009G223900 Sobic010G249600--Sobic009G223900 Sobic002G085600 Sobic002G085600 Sobic010G249600--Sobic002G085600 Sobic004G224000 Sobic004G224000 Sobic010G249600--Sobic004G224000 Sobic001G191300 Sobic001G191300 Sobic010G249600--Sobic001G191300 Sobic003G440500--Sobic010G249600 Sobic003G440500--Sobic002G377400 Sobic003G440500--Sobic009G223900 Sobic005G025400 Sobic005G025400 Sobic003G440500--Sobic005G025400 Sobic003G440500--Sobic007G185000 Sobic010G242000 Sobic010G242000 Sobic003G440500--Sobic010G242000 Sobic003G440500--Sobic003G308900 Sobic002G399000 Sobic002G399000 Sobic003G440500--Sobic002G399000 Sobic009G181900 Sobic009G181900 Sobic003G440500--Sobic009G181900 Sobic002G296800--Sobic003G308900 Sobic002G296800--Sobic002G377400 Sobic002G296800--Sobic010G249600 Sobic002G296800--Sobic007G185000 Sobic003G364550 Sobic003G364550 Sobic002G296800--Sobic003G364550 Sobic002G296800--Sobic003G243750 Sobic002G296800--Sobic005G090700 Sobic010G133450 Sobic010G133450 Sobic002G296800--Sobic010G133450 Sobic009G055000 Sobic009G055000 Sobic002G296800--Sobic009G055000 Sobic005G090700--Sobic003G308900 Sobic005G090700--Sobic008G159800 Sobic005G090700--Sobic010G249600 Sobic005G090700--Sobic002G377400 Sobic003G336600 Sobic003G336600 Sobic005G090700--Sobic003G336600 Sobic009G112500 Sobic009G112500 Sobic005G090700--Sobic009G112500 Sobic005G090700--Sobic002G296800 Sobic005G014400 Sobic005G014400 Sobic005G090700--Sobic005G014400 Sobic006G268100 Sobic006G268100 Sobic005G090700--Sobic006G268100 Sobic003G243750--Sobic007G185000 Sobic003G243750--Sobic009G203600 Sobic003G243750--Sobic002G377400 Sobic003G333150 Sobic003G333150 Sobic003G243750--Sobic003G333150 Sobic003G130650 Sobic003G130650 Sobic003G243750--Sobic003G130650 Sobic008G045300 Sobic008G045300 Sobic003G243750--Sobic008G045300 Sobic003G243750--Sobic003G308900 Sobic010G025200 Sobic010G025200 Sobic003G243750--Sobic010G025200 Sobic006G144900 Sobic006G144900 Sobic003G243750--Sobic006G144900 Sobic003G149400 Sobic003G149400 Sobic008G065700--Sobic003G149400 Sobic008G065700--Sobic004G224000 Sobic005G110553 Sobic005G110553 Sobic008G065700--Sobic005G110553 Sobic001G367900 Sobic001G367900 Sobic008G065700--Sobic001G367900 Sobic003G092150 Sobic003G092150 Sobic008G065700--Sobic003G092150 Sobic008G065700--Sobic007G226000 Sobic009G122000 Sobic009G122000 Sobic008G065700--Sobic009G122000 Sobic007G210200 Sobic007G210200 Sobic008G065700--Sobic007G210200 Sobic008G065700--Sobic002G377400 Sobic008G159800--Sobic010G242000 Sobic008G159800--Sobic005G025400 Sobic008G159800--Sobic003G440500 Sobic008G159800--Sobic005G090700 Sobic008G159800--Sobic007G185000 Sobic008G159800--Sobic005G014400 Sobic008G159800--Sobic003G308900 Sobic008G159800--Sobic002G377400 Sobic008G159800--Sobic003G336600
Octagon: transcription factors


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