Gene annotation
Transcriptome id Sobic.010G213100.1,Sobic.010G213100.2
Synonym SDE1, RDR6, SGS2, Sb10g025970
Functional annotation RNA-dependent RNA polymerase, putative, expressed
UniProt A0A1W0VU58 , A0A1W0VU31
Pfam PF05183
Panther DB PTHR23079 PTHR23079:SF1
NCBI CDD -
KEGG Orthology K11699; RDR, RNA-dependent RNA polymerase
Gene Ontology GO:0003968; RNA-directed 5'-3' RNA polymerase activity


Orthologs (automatic annotation)
TAIR AT3G49500 : RNA-dependent RNA polymerase 6
RAP-DB (Rice) LOC_Os01g34350.1 : RNA-dependent RNA polymerase, putative, expressed
MaizeGDB (Corn) Zm00025a051648 , Zm00025a051645 , Zm00025a051644 , Zm00025a051647 , Zm00025a051640 , Zm00025a051643 , Zm00025a051723 , Zm00025a024823
Brachypodium -
Barley HORVU3Hr1G107690.2 , HORVU3Hr1G107690.3
Wheat TraesCS3D02G489400 , TraesCS3B02G543300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G091900 - -
2 Sobic.010G054400 leucine-rich repeat family protein, putative, expressed -
3 Sobic.001G062000 - -
4 Sobic.007G182400 - -
5 Sobic.003G308900 expressed protein -
6 Sobic.003G336600 homeobox domain containing protein, expressed -
7 Sobic.009G047033 - -
8 Sobic.002G377400 cysteine-rich receptor-like protein kinase 16 precursor, putative, expressed K04730: interleukin-1 receptor-associated kinase 1
9 Sobic.004G343733 - -
10 Sobic.008G159800 - -
11 Sobic.003G243750 - -
12 Sobic.007G185000 leucine rich repeat protein, putative, expressed -
13 Sobic.007G165100 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
14 Sobic.007G171300 - -
15 Sobic.010G051600 - -
16 Sobic.003G184600 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
17 Sobic.005G090700 - -
18 Sobic.003G056900 expressed protein -
19 Sobic.001G529301 - -
20 Sobic.001G193700 oxidoreductase, aldo/keto reductase family protein, putative, expressed K05275: pyridoxine 4-dehydrogenase


Gene co-expression network
sample Sobic010G213100 Sobic010G213100 Sobic003G091900 Sobic003G091900 Sobic010G213100--Sobic003G091900 Sobic010G054400 Sobic010G054400 Sobic010G213100--Sobic010G054400 Sobic001G062000 Sobic001G062000 Sobic010G213100--Sobic001G062000 Sobic007G182400 Sobic007G182400 Sobic010G213100--Sobic007G182400 Sobic003G308900 Sobic003G308900 Sobic010G213100--Sobic003G308900 Sobic003G336600 Sobic003G336600 Sobic010G213100--Sobic003G336600 Sobic009G047033 Sobic009G047033 Sobic010G213100--Sobic009G047033 Sobic002G377400 Sobic002G377400 Sobic010G213100--Sobic002G377400 Sobic004G343733 Sobic004G343733 Sobic010G213100--Sobic004G343733 Sobic003G091900--Sobic010G213100 Sobic003G091900--Sobic007G182400 Sobic003G091900--Sobic009G047033 Sobic003G091900--Sobic001G062000 Sobic003G056900 Sobic003G056900 Sobic003G091900--Sobic003G056900 Sobic003G091900--Sobic010G054400 Sobic003G091900--Sobic002G377400 Sobic003G091900--Sobic003G336600 Sobic007G185000 Sobic007G185000 Sobic003G091900--Sobic007G185000 Sobic010G054400--Sobic007G182400 Sobic010G054400--Sobic010G213100 Sobic010G054400--Sobic001G062000 Sobic010G054400--Sobic004G343733 Sobic010G160850 Sobic010G160850 Sobic010G054400--Sobic010G160850 Sobic010G054400--Sobic003G091900 Sobic001G193700 Sobic001G193700 Sobic010G054400--Sobic001G193700 Sobic010G054400--Sobic002G377400 Sobic001G486400 Sobic001G486400 Sobic010G054400--Sobic001G486400 Sobic001G062000--Sobic007G182400 Sobic001G062000--Sobic010G054400 Sobic001G062000--Sobic003G091900 Sobic001G062000--Sobic010G213100 Sobic001G062000--Sobic004G343733 Sobic009G079700 Sobic009G079700 Sobic001G062000--Sobic009G079700 Sobic001G062000--Sobic002G377400 Sobic001G529301 Sobic001G529301 Sobic001G062000--Sobic001G529301 Sobic001G062000--Sobic003G056900 Sobic007G182400--Sobic001G062000 Sobic007G182400--Sobic010G054400 Sobic007G182400--Sobic003G091900 Sobic007G182400--Sobic010G213100 Sobic007G182400--Sobic004G343733 Sobic007G182400--Sobic009G047033 Sobic007G182400--Sobic010G160850 Sobic007G182400--Sobic002G377400 Sobic007G182400--Sobic001G529301 Sobic003G308900--Sobic002G377400 Sobic003G308900--Sobic007G185000 Sobic010G249600 Sobic010G249600 Sobic003G308900--Sobic010G249600 Sobic003G440500 Sobic003G440500 Sobic003G308900--Sobic003G440500 Sobic002G296800 Sobic002G296800 Sobic003G308900--Sobic002G296800 Sobic005G090700 Sobic005G090700 Sobic003G308900--Sobic005G090700 Sobic003G243750 Sobic003G243750 Sobic003G308900--Sobic003G243750 Sobic008G065700 Sobic008G065700 Sobic003G308900--Sobic008G065700 Sobic008G159800 Sobic008G159800 Sobic003G308900--Sobic008G159800 Sobic003G336600--Sobic003G091900 Sobic003G336600--Sobic010G213100 Sobic003G336600--Sobic008G159800 Sobic003G336600--Sobic003G308900 Sobic003G336600--Sobic005G090700 Sobic003G336600--Sobic007G185000 Sobic003G336600--Sobic003G243750 Sobic003G336600--Sobic002G377400 Sobic007G165100 Sobic007G165100 Sobic003G336600--Sobic007G165100 Sobic010G051600 Sobic010G051600 Sobic009G047033--Sobic010G051600 Sobic010G051900 Sobic010G051900 Sobic009G047033--Sobic010G051900 Sobic009G047033--Sobic003G091900 Sobic009G047033--Sobic007G185000 Sobic002G076450 Sobic002G076450 Sobic009G047033--Sobic002G076450 Sobic009G047033--Sobic004G343733 Sobic009G047033--Sobic003G308900 Sobic009G047033--Sobic010G213100 Sobic003G092150 Sobic003G092150 Sobic009G047033--Sobic003G092150 Sobic002G377400--Sobic003G308900 Sobic002G377400--Sobic007G185000 Sobic002G377400--Sobic003G440500 Sobic002G377400--Sobic003G243750 Sobic002G377400--Sobic010G249600 Sobic002G377400--Sobic002G296800 Sobic002G398600 Sobic002G398600 Sobic002G377400--Sobic002G398600 Sobic003G262500 Sobic003G262500 Sobic002G377400--Sobic003G262500 Sobic002G377400--Sobic008G065700 Sobic004G343733--Sobic010G054400 Sobic002G180200 Sobic002G180200 Sobic004G343733--Sobic002G180200 Sobic004G343733--Sobic009G047033 Sobic001G070900 Sobic001G070900 Sobic004G343733--Sobic001G070900 Sobic004G343733--Sobic007G182400 Sobic004G343733--Sobic010G213100 Sobic004G343733--Sobic001G062000 Sobic004G343733--Sobic009G079700 Sobic004G343733--Sobic003G091900
Octagon: transcription factors


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