Gene annotation
Transcriptome id Sobic.002G369000.1
Synonym Sb02g038810
Functional annotation expressed protein
UniProt C5XDX0
Pfam -
Panther DB PTHR33333 PTHR33333:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os07g41400.1 : EGG APPARATUS-1, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G369000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G368901 - -
2 Sobic.005G047500 expressed protein -
3 Sobic.010G106700 oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed -
4 Sobic.010G115600 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
5 Sobic.009G162300 similar to Putative laccase-11(PubMedID : 29862293)@Laccase LAC17 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
6 Sobic.003G082700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@glycosyl hydrolase family 10 protein, putative, expressed -
7 Sobic.008G016000 major facilitator superfamily antiporter, putative, expressed -
8 Sobic.001G232200 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
9 Sobic.002G003500 peroxidase precursor, putative, expressed K00430: peroxidase
10 Sobic.007G047300 encodes the lignin biosynthetic enzyme caffeic acid O-methyltransferase (COMT)(PubMedID : 20585750)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylate the tricin precursors luteolin and selgin(PubMedID : 28594846)@monolignol biosynthetic enzyme caffeic acid O-methyl transferase (COMT)(PubMedID : 12756532)@lignin biosynthesis(PubMedID : 12756532)@key enzymes in the phenylptropanoid pathway(PubMedID : 28119720)@O-methyltransferase, putative, expressed K05279: flavonol 3-O-methyltransferase
11 Sobic.009G008800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@xylem cysteine proteinase 2 precursor, putative, expressed K16290: xylem cysteine proteinase
12 Sobic.009G150500 expressed protein -
13 Sobic.005G052500 "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed K13946: AUX1, auxin influx carrier (AUX1 LAX family)
14 Sobic.003G239100 lipase class 3 family protein, putative, expressed -
15 Sobic.001G484000 hydrolase, alpha/beta fold family protein, putative, expressed -
16 Sobic.007G147800 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR33 - Auxin-responsive SAUR gene family member, expressed -
17 Sobic.008G079800 Os4bglu12 - beta-glucosidase, exo-beta-glucanase, expressed K01188: beta-glucosidase
18 Sobic.009G215000 - -
19 Sobic.003G257400 "BG3(Ortholog in rice:Xiao et al., 20018)"(PubMedID : 31659870)@purine permease, putative, expressed -
20 Sobic.002G094600 "CESA6-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@"cellulose synthase A2, incorporate UDP-sugars into cellulose"(PubMedID : 28944535)@CESA6 - cellulose synthase, expressed K10999: cellulose synthase A


Gene co-expression network
sample Sobic002G369000 Sobic002G369000 Sobic002G368901 Sobic002G368901 Sobic002G369000--Sobic002G368901 Sobic005G047500 Sobic005G047500 Sobic002G369000--Sobic005G047500 Sobic010G106700 Sobic010G106700 Sobic002G369000--Sobic010G106700 Sobic010G115600 Sobic010G115600 Sobic002G369000--Sobic010G115600 Sobic009G162300 Sobic009G162300 Sobic002G369000--Sobic009G162300 Sobic003G082700 Sobic003G082700 Sobic002G369000--Sobic003G082700 Sobic008G016000 Sobic008G016000 Sobic002G369000--Sobic008G016000 Sobic001G232200 Sobic001G232200 Sobic002G369000--Sobic001G232200 Sobic002G003500 Sobic002G003500 Sobic002G369000--Sobic002G003500 Sobic003G183300 Sobic003G183300 Sobic002G368901--Sobic003G183300 Sobic003G121000 Sobic003G121000 Sobic002G368901--Sobic003G121000 Sobic001G169400 Sobic001G169400 Sobic002G368901--Sobic001G169400 Sobic008G109300 Sobic008G109300 Sobic002G368901--Sobic008G109300 Sobic004G121700 Sobic004G121700 Sobic002G368901--Sobic004G121700 Sobic002G183750 Sobic002G183750 Sobic002G368901--Sobic002G183750 Sobic007G094300 Sobic007G094300 Sobic002G368901--Sobic007G094300 Sobic010G070400 Sobic010G070400 Sobic002G368901--Sobic010G070400 Sobic002G368901--Sobic002G369000 Sobic001G397300 Sobic001G397300 Sobic005G047500--Sobic001G397300 Sobic005G047500--Sobic002G369000 Sobic002G327400 Sobic002G327400 Sobic005G047500--Sobic002G327400 Sobic002G284000 Sobic002G284000 Sobic005G047500--Sobic002G284000 Sobic007G006300 Sobic007G006300 Sobic005G047500--Sobic007G006300 Sobic001G190100 Sobic001G190100 Sobic005G047500--Sobic001G190100 Sobic008G174650 Sobic008G174650 Sobic005G047500--Sobic008G174650 Sobic007G178000 Sobic007G178000 Sobic005G047500--Sobic007G178000 Sobic002G386000 Sobic002G386000 Sobic005G047500--Sobic002G386000 Sobic001G046800 Sobic001G046800 Sobic010G106700--Sobic001G046800 Sobic009G008800 Sobic009G008800 Sobic010G106700--Sobic009G008800 Sobic002G053900 Sobic002G053900 Sobic010G106700--Sobic002G053900 Sobic010G047600 Sobic010G047600 Sobic010G106700--Sobic010G047600 Sobic001G059500 Sobic001G059500 Sobic010G106700--Sobic001G059500 Sobic003G352700 Sobic003G352700 Sobic010G106700--Sobic003G352700 Sobic001G261460 Sobic001G261460 Sobic010G106700--Sobic001G261460 Sobic001G068500 Sobic001G068500 Sobic010G106700--Sobic001G068500 Sobic010G106700--Sobic003G082700 Sobic001G002800 Sobic001G002800 Sobic010G115600--Sobic001G002800 Sobic003G053500 Sobic003G053500 Sobic010G115600--Sobic003G053500 Sobic007G090472 Sobic007G090472 Sobic010G115600--Sobic007G090472 Sobic010G028100 Sobic010G028100 Sobic010G115600--Sobic010G028100 Sobic002G146000 Sobic002G146000 Sobic010G115600--Sobic002G146000 Sobic007G073000 Sobic007G073000 Sobic010G115600--Sobic007G073000 Sobic001G514700 Sobic001G514700 Sobic010G115600--Sobic001G514700 Sobic001G360500 Sobic001G360500 Sobic010G115600--Sobic001G360500 Sobic003G266300 Sobic003G266300 Sobic010G115600--Sobic003G266300 Sobic003G353200 Sobic003G353200 Sobic009G162300--Sobic003G353200 Sobic009G162300--Sobic002G146000 Sobic003G053600 Sobic003G053600 Sobic009G162300--Sobic003G053600 Sobic009G162300--Sobic003G183300 Sobic005G166700 Sobic005G166700 Sobic009G162300--Sobic005G166700 Sobic003G280000 Sobic003G280000 Sobic009G162300--Sobic003G280000 Sobic006G003100 Sobic006G003100 Sobic009G162300--Sobic006G003100 Sobic003G257400 Sobic003G257400 Sobic009G162300--Sobic003G257400 Sobic004G047600 Sobic004G047600 Sobic009G162300--Sobic004G047600 Sobic003G082700--Sobic003G352700 Sobic003G239100 Sobic003G239100 Sobic003G082700--Sobic003G239100 Sobic003G082700--Sobic009G008800 Sobic003G082700--Sobic004G047600 Sobic001G484000 Sobic001G484000 Sobic003G082700--Sobic001G484000 Sobic006G160900 Sobic006G160900 Sobic003G082700--Sobic006G160900 Sobic003G426200 Sobic003G426200 Sobic003G082700--Sobic003G426200 Sobic001G471800 Sobic001G471800 Sobic003G082700--Sobic001G471800 Sobic003G082700--Sobic001G068500 Sobic002G326500 Sobic002G326500 Sobic008G016000--Sobic002G326500 Sobic004G322100 Sobic004G322100 Sobic008G016000--Sobic004G322100 Sobic003G000100 Sobic003G000100 Sobic008G016000--Sobic003G000100 Sobic004G271800 Sobic004G271800 Sobic008G016000--Sobic004G271800 Sobic003G399600 Sobic003G399600 Sobic008G016000--Sobic003G399600 Sobic002G183700 Sobic002G183700 Sobic008G016000--Sobic002G183700 Sobic004G110700 Sobic004G110700 Sobic008G016000--Sobic004G110700 Sobic003G140700 Sobic003G140700 Sobic008G016000--Sobic003G140700 Sobic009G150500 Sobic009G150500 Sobic008G016000--Sobic009G150500 Sobic001G232200--Sobic005G166700 Sobic001G487800 Sobic001G487800 Sobic001G232200--Sobic001G487800 Sobic010G267200 Sobic010G267200 Sobic001G232200--Sobic010G267200 Sobic001G232200--Sobic009G150500 Sobic005G224300 Sobic005G224300 Sobic001G232200--Sobic005G224300 Sobic005G202300 Sobic005G202300 Sobic001G232200--Sobic005G202300 Sobic001G232200--Sobic003G353200 Sobic001G232200--Sobic003G280000 Sobic002G228800 Sobic002G228800 Sobic001G232200--Sobic002G228800 Sobic002G003500--Sobic001G068500 Sobic005G127200 Sobic005G127200 Sobic002G003500--Sobic005G127200 Sobic002G030575 Sobic002G030575 Sobic002G003500--Sobic002G030575 Sobic004G266700 Sobic004G266700 Sobic002G003500--Sobic004G266700 Sobic002G030650 Sobic002G030650 Sobic002G003500--Sobic002G030650 Sobic002G030800 Sobic002G030800 Sobic002G003500--Sobic002G030800 Sobic003G341500 Sobic003G341500 Sobic002G003500--Sobic003G341500 Sobic003G368100 Sobic003G368100 Sobic002G003500--Sobic003G368100 Sobic001G144800 Sobic001G144800 Sobic002G003500--Sobic001G144800
Octagon: transcription factors


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