Gene annotation
Transcriptome id Sobic.005G047500.1
Synonym
Functional annotation expressed protein
UniProt A0A1B6PQ50
Pfam PF05633
Panther DB PTHR31509 PTHR31509:SF21
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G18740 : Protein of unknown function (DUF793)
RAP-DB (Rice) LOC_Os12g06780.1 : expressed protein
MaizeGDB (Corn) Zm00025a034174 , Zm00025a012916 , Zm00025a025780 , Zm00025a053997
Brachypodium PNT65400
Barley HORVU5Hr1G039660.2 , HORVU5Hr1G039660.1 , HORVU4Hr1G020080.1 , HORVU4Hr1G020080.2 , HORVU4Hr1G020080.3 , HORVU4Hr1G020080.4 , HORVU4Hr1G020080.5
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.005G047500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G397300 Up-reguralion under heat(PubMedID : 24916767)@expressed protein -
2 Sobic.002G369000 expressed protein -
3 Sobic.002G327400 TKL_IRAK_DUF26-lc22 - DUF26 kinases have homology to DUF26 containing loci, expressed -
4 Sobic.002G284000 pyridoxal-dependent decarboxylase protein, putative, expressed K01581: E4.1.1.17, ODC1, speC, ornithine decarboxylase
5 Sobic.007G006300 expressed protein -
6 Sobic.001G190100 serine/threonine-protein kinase receptor precursor, putative, expressed -
7 Sobic.008G174650 - K08064: NFYA, nuclear transcription factor Y, alpha
8 Sobic.007G178000 heat shock protein DnaJ, putative, expressed -
9 Sobic.002G386000 zinc finger, C3HC4 type domain containing protein, expressed -
10 Sobic.002G327201 - -
11 Sobic.007G147700 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR33 - Auxin-responsive SAUR gene family member, expressed -
12 Sobic.002G407100 expressed protein -
13 Sobic.003G112400 expressed protein -
14 Sobic.001G204900 cystathionin beta synthase protein, putative, expressed -
15 Sobic.002G270000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@BAG domain-containing protein, putative, expressed -
16 Sobic.010G135100 expressed protein -
17 Sobic.009G243400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cinnamoyl-CoA reductase-related, putative, expressed -
18 Sobic.002G250000 Protein dihydroflavonol-4-reductase DFR (Os)(PubMedID : 27208977)@dehydrogenase, putative, expressed -
19 Sobic.002G335300 uncharacterized Cys-rich domain containing protein, putative, expressed -
20 Sobic.003G029400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@avr9/Cf-9 rapidly elicited protein 146, putative, expressed -


Gene co-expression network
sample Sobic005G047500 Sobic005G047500 Sobic001G397300 Sobic001G397300 Sobic005G047500--Sobic001G397300 Sobic002G369000 Sobic002G369000 Sobic005G047500--Sobic002G369000 Sobic002G327400 Sobic002G327400 Sobic005G047500--Sobic002G327400 Sobic002G284000 Sobic002G284000 Sobic005G047500--Sobic002G284000 Sobic007G006300 Sobic007G006300 Sobic005G047500--Sobic007G006300 Sobic001G190100 Sobic001G190100 Sobic005G047500--Sobic001G190100 Sobic008G174650 Sobic008G174650 Sobic005G047500--Sobic008G174650 Sobic007G178000 Sobic007G178000 Sobic005G047500--Sobic007G178000 Sobic002G386000 Sobic002G386000 Sobic005G047500--Sobic002G386000 Sobic002G250000 Sobic002G250000 Sobic001G397300--Sobic002G250000 Sobic009G189501 Sobic009G189501 Sobic001G397300--Sobic009G189501 Sobic001G397300--Sobic007G006300 Sobic002G234400 Sobic002G234400 Sobic001G397300--Sobic002G234400 Sobic001G397300--Sobic001G190100 Sobic002G407100 Sobic002G407100 Sobic001G397300--Sobic002G407100 Sobic001G397300--Sobic007G178000 Sobic005G011300 Sobic005G011300 Sobic001G397300--Sobic005G011300 Sobic002G327201 Sobic002G327201 Sobic001G397300--Sobic002G327201 Sobic002G368901 Sobic002G368901 Sobic002G369000--Sobic002G368901 Sobic002G369000--Sobic005G047500 Sobic010G106700 Sobic010G106700 Sobic002G369000--Sobic010G106700 Sobic010G115600 Sobic010G115600 Sobic002G369000--Sobic010G115600 Sobic009G162300 Sobic009G162300 Sobic002G369000--Sobic009G162300 Sobic003G082700 Sobic003G082700 Sobic002G369000--Sobic003G082700 Sobic008G016000 Sobic008G016000 Sobic002G369000--Sobic008G016000 Sobic001G232200 Sobic001G232200 Sobic002G369000--Sobic001G232200 Sobic002G003500 Sobic002G003500 Sobic002G369000--Sobic002G003500 Sobic003G112400 Sobic003G112400 Sobic002G327400--Sobic003G112400 Sobic003G060100 Sobic003G060100 Sobic002G327400--Sobic003G060100 Sobic002G327400--Sobic002G327201 Sobic001G487500 Sobic001G487500 Sobic002G327400--Sobic001G487500 Sobic001G086000 Sobic001G086000 Sobic002G327400--Sobic001G086000 Sobic002G238600 Sobic002G238600 Sobic002G327400--Sobic002G238600 Sobic010G135100 Sobic010G135100 Sobic002G327400--Sobic010G135100 Sobic002G327400--Sobic002G234400 Sobic008G077550 Sobic008G077550 Sobic002G327400--Sobic008G077550 Sobic001G201200 Sobic001G201200 Sobic002G284000--Sobic001G201200 Sobic007G147700 Sobic007G147700 Sobic002G284000--Sobic007G147700 Sobic002G284000--Sobic007G006300 Sobic001G279350 Sobic001G279350 Sobic002G284000--Sobic001G279350 Sobic001G076100 Sobic001G076100 Sobic002G284000--Sobic001G076100 Sobic001G481300 Sobic001G481300 Sobic002G284000--Sobic001G481300 Sobic005G086400 Sobic005G086400 Sobic002G284000--Sobic005G086400 Sobic004G109600 Sobic004G109600 Sobic002G284000--Sobic004G109600 Sobic001G371800 Sobic001G371800 Sobic002G284000--Sobic001G371800 Sobic010G198500 Sobic010G198500 Sobic007G006300--Sobic010G198500 Sobic007G006300--Sobic007G147700 Sobic004G086400 Sobic004G086400 Sobic007G006300--Sobic004G086400 Sobic001G195200 Sobic001G195200 Sobic007G006300--Sobic001G195200 Sobic007G006300--Sobic002G234400 Sobic007G006300--Sobic001G190100 Sobic007G006300--Sobic001G397300 Sobic003G148300 Sobic003G148300 Sobic007G006300--Sobic003G148300 Sobic004G108200 Sobic004G108200 Sobic007G006300--Sobic004G108200 Sobic001G190100--Sobic009G189501 Sobic001G190100--Sobic007G006300 Sobic001G190100--Sobic001G397300 Sobic001G105900 Sobic001G105900 Sobic001G190100--Sobic001G105900 Sobic001G190100--Sobic002G234400 Sobic001G391500 Sobic001G391500 Sobic001G190100--Sobic001G391500 Sobic001G190100--Sobic002G250000 Sobic003G260300 Sobic003G260300 Sobic001G190100--Sobic003G260300 Sobic002G339000 Sobic002G339000 Sobic001G190100--Sobic002G339000 Sobic004G171700 Sobic004G171700 Sobic008G174650--Sobic004G171700 Sobic008G174650--Sobic002G234400 Sobic008G174650--Sobic001G487500 Sobic008G174650--Sobic001G190100 Sobic004G229400 Sobic004G229400 Sobic008G174650--Sobic004G229400 Sobic006G187900 Sobic006G187900 Sobic008G174650--Sobic006G187900 Sobic004G229500 Sobic004G229500 Sobic008G174650--Sobic004G229500 Sobic009G183900 Sobic009G183900 Sobic008G174650--Sobic009G183900 Sobic010G064000 Sobic010G064000 Sobic008G174650--Sobic010G064000 Sobic003G377100 Sobic003G377100 Sobic007G178000--Sobic003G377100 Sobic003G197200 Sobic003G197200 Sobic007G178000--Sobic003G197200 Sobic007G178000--Sobic007G147700 Sobic003G355100 Sobic003G355100 Sobic007G178000--Sobic003G355100 Sobic007G178000--Sobic001G481300 Sobic007G178000--Sobic001G397300 Sobic003G148600 Sobic003G148600 Sobic007G178000--Sobic003G148600 Sobic003G144700 Sobic003G144700 Sobic007G178000--Sobic003G144700 Sobic007G178000--Sobic002G407100 Sobic004G228900 Sobic004G228900 Sobic002G386000--Sobic004G228900 Sobic001G426000 Sobic001G426000 Sobic002G386000--Sobic001G426000 Sobic001G338600 Sobic001G338600 Sobic002G386000--Sobic001G338600 Sobic010G104300 Sobic010G104300 Sobic002G386000--Sobic010G104300 Sobic001G425600 Sobic001G425600 Sobic002G386000--Sobic001G425600 Sobic004G273300 Sobic004G273300 Sobic002G386000--Sobic004G273300 Sobic001G425500 Sobic001G425500 Sobic002G386000--Sobic001G425500 Sobic003G350700 Sobic003G350700 Sobic002G386000--Sobic003G350700 Sobic004G109700 Sobic004G109700 Sobic002G386000--Sobic004G109700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.