Gene annotation
Transcriptome id Sobic.002G386000.1
Synonym Sb02g040220
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5X373
Pfam PF13639
Panther DB PTHR22763 PTHR22763:SF72
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G19950 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os07g43740.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a015298
Brachypodium KQK15074
Barley HORVU0Hr1G002870.1 , HORVU0Hr1G002870.3 , HORVU0Hr1G002870.2 , HORVU0Hr1G002870.4
Wheat TraesCS2A02G156800
Populus -


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cDNA sequences
Sobic.002G386000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G228900 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@heat shock 22 kDa protein, mitochondrial precursor, putative, expressed K13993: HSP20 family protein
2 Sobic.001G426000 Up-reguralion under heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
3 Sobic.001G338600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF260 domain containing protein, putative, expressed -
4 Sobic.010G104300 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
5 Sobic.001G425600 "similar to 17.4 kDa class I heat shock protein 3, maped into a unique stay green QTL (QSTG11_1) involved in drought tolerance."(PubMedID : 24655390)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@similar to 17.4 kDa class I heat shock protein 3(PubMedID : 24655390)@similar to 17.4kDa class I heat shock protein 3(PubMedID : 24655390)@similar to 17.4kDa class I heat shock protein 3(PubMedID : 24655390)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
6 Sobic.004G273300 ubiquitin family protein, putative, expressed K08770: ubiquitin C
7 Sobic.001G425500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
8 Sobic.003G350700 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
9 Sobic.004G109700 zinc finger, C3HC4 type domain containing protein, expressed -
10 Sobic.002G282300 expressed protein -
11 Sobic.005G122500 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@IQ calmodulin-binding and BAG domain containing protein, putative, expressed -
12 Sobic.010G234700 expressed protein -
13 Sobic.002G278500 nodulin, putative, expressed -
14 Sobic.003G067800 universal stress protein domain containing protein, putative, expressed -
15 Sobic.003G197200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
16 Sobic.009G194400 expressed protein -
17 Sobic.004G199300 hypoxia-responsive family protein, putative, expressed -
18 Sobic.001G077600 expressed protein -
19 Sobic.001G481300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
20 Sobic.001G201200 - -


Gene co-expression network
sample Sobic002G386000 Sobic002G386000 Sobic004G228900 Sobic004G228900 Sobic002G386000--Sobic004G228900 Sobic001G426000 Sobic001G426000 Sobic002G386000--Sobic001G426000 Sobic001G338600 Sobic001G338600 Sobic002G386000--Sobic001G338600 Sobic010G104300 Sobic010G104300 Sobic002G386000--Sobic010G104300 Sobic001G425600 Sobic001G425600 Sobic002G386000--Sobic001G425600 Sobic004G273300 Sobic004G273300 Sobic002G386000--Sobic004G273300 Sobic001G425500 Sobic001G425500 Sobic002G386000--Sobic001G425500 Sobic003G350700 Sobic003G350700 Sobic002G386000--Sobic003G350700 Sobic004G109700 Sobic004G109700 Sobic002G386000--Sobic004G109700 Sobic005G122500 Sobic005G122500 Sobic004G228900--Sobic005G122500 Sobic004G228900--Sobic001G426000 Sobic002G278500 Sobic002G278500 Sobic004G228900--Sobic002G278500 Sobic004G228900--Sobic001G338600 Sobic004G228900--Sobic003G350700 Sobic004G249900 Sobic004G249900 Sobic004G228900--Sobic004G249900 Sobic003G310700 Sobic003G310700 Sobic004G228900--Sobic003G310700 Sobic010G234700 Sobic010G234700 Sobic004G228900--Sobic010G234700 Sobic004G228900--Sobic010G104300 Sobic001G426000--Sobic004G228900 Sobic009G169000 Sobic009G169000 Sobic001G426000--Sobic009G169000 Sobic001G426000--Sobic001G338600 Sobic010G196600 Sobic010G196600 Sobic001G426000--Sobic010G196600 Sobic001G426000--Sobic003G310700 Sobic001G320900 Sobic001G320900 Sobic001G426000--Sobic001G320900 Sobic003G144700 Sobic003G144700 Sobic001G426000--Sobic003G144700 Sobic002G282300 Sobic002G282300 Sobic001G426000--Sobic002G282300 Sobic001G426000--Sobic002G278500 Sobic001G338600--Sobic002G282300 Sobic001G338600--Sobic002G278500 Sobic001G338600--Sobic004G228900 Sobic001G338600--Sobic001G426000 Sobic001G205350 Sobic001G205350 Sobic001G338600--Sobic001G205350 Sobic006G230900 Sobic006G230900 Sobic001G338600--Sobic006G230900 Sobic001G338600--Sobic003G144700 Sobic001G441100 Sobic001G441100 Sobic001G338600--Sobic001G441100 Sobic004G283500 Sobic004G283500 Sobic001G338600--Sobic004G283500 Sobic009G194400 Sobic009G194400 Sobic010G104300--Sobic009G194400 Sobic001G495132 Sobic001G495132 Sobic010G104300--Sobic001G495132 Sobic002G388800 Sobic002G388800 Sobic010G104300--Sobic002G388800 Sobic004G092800 Sobic004G092800 Sobic010G104300--Sobic004G092800 Sobic002G269100 Sobic002G269100 Sobic010G104300--Sobic002G269100 Sobic010G104300--Sobic001G425500 Sobic004G295600 Sobic004G295600 Sobic010G104300--Sobic004G295600 Sobic010G104300--Sobic001G338600 Sobic001G440200 Sobic001G440200 Sobic010G104300--Sobic001G440200 Sobic001G425600--Sobic001G425500 Sobic001G425600--Sobic004G109700 Sobic001G425600--Sobic004G273300 Sobic001G425600--Sobic009G194400 Sobic004G109600 Sobic004G109600 Sobic001G425600--Sobic004G109600 Sobic001G481300 Sobic001G481300 Sobic001G425600--Sobic001G481300 Sobic001G425600--Sobic010G196600 Sobic001G279350 Sobic001G279350 Sobic001G425600--Sobic001G279350 Sobic003G323201 Sobic003G323201 Sobic001G425600--Sobic003G323201 Sobic004G273300--Sobic001G425600 Sobic004G273300--Sobic001G425500 Sobic004G273300--Sobic004G109700 Sobic004G273300--Sobic001G481300 Sobic004G273300--Sobic004G109600 Sobic001G201200 Sobic001G201200 Sobic004G273300--Sobic001G201200 Sobic002G284000 Sobic002G284000 Sobic004G273300--Sobic002G284000 Sobic004G273300--Sobic001G279350 Sobic004G273300--Sobic009G194400 Sobic001G425500--Sobic001G425600 Sobic001G425500--Sobic004G109700 Sobic001G425500--Sobic009G194400 Sobic001G425500--Sobic010G196600 Sobic001G425500--Sobic004G273300 Sobic001G425500--Sobic003G323201 Sobic001G425500--Sobic004G092800 Sobic001G425500--Sobic004G109600 Sobic001G425500--Sobic001G481300 Sobic003G350700--Sobic004G228900 Sobic009G231400 Sobic009G231400 Sobic003G350700--Sobic009G231400 Sobic003G350700--Sobic001G338600 Sobic003G350700--Sobic005G122500 Sobic003G067800 Sobic003G067800 Sobic003G350700--Sobic003G067800 Sobic003G350700--Sobic001G426000 Sobic003G350700--Sobic002G278500 Sobic009G163900 Sobic009G163900 Sobic003G350700--Sobic009G163900 Sobic003G350700--Sobic010G234700 Sobic004G109700--Sobic004G109600 Sobic004G109700--Sobic001G425600 Sobic004G109700--Sobic001G425500 Sobic004G109700--Sobic001G481300 Sobic004G109700--Sobic010G196600 Sobic004G109700--Sobic009G194400 Sobic004G109700--Sobic003G323201 Sobic007G214600 Sobic007G214600 Sobic004G109700--Sobic007G214600 Sobic004G109700--Sobic001G279350
Octagon: transcription factors


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