Gene annotation
Transcriptome id Sobic.003G153100.1
Synonym Sb03g013310
Functional annotation polygalacturonase, putative, expressed
UniProt A0A1B6Q3C1
Pfam PF00295
Panther DB PTHR31375 PTHR31375:SF30
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004650polygalacturonase activity


Orthologs (automatic annotation)
TAIR AT1G48100 : Pectin lyase-like superfamily protein
RAP-DB (Rice) LOC_Os01g22590.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a024257 , Zm00025a036031 , Zm00025a024414 , Zm00025a036149
Brachypodium KQK04059 , KQK04217 , KQK07157
Barley HORVU7Hr1G078960.5 , HORVU7Hr1G078960.4 , HORVU7Hr1G078960.7 , HORVU7Hr1G078960.2 , HORVU7Hr1G078960.9 , HORVU7Hr1G078960.11 , HORVU7Hr1G078960.10 , HORVU7Hr1G078960.13 , HORVU7Hr1G078960.12 , HORVU1Hr1G067840.4 , HORVU1Hr1G067840.5 , HORVU1Hr1G067840.6 , HORVU1Hr1G067840.1 , HORVU1Hr1G067840.2 , HORVU1Hr1G067840.3
Wheat TraesCS1B02G322500 , TraesCS7D02G326800 , TraesCS7A02G330000 , TraesCS7B02G230600 , TraesCS1D02G311000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G015166 - -
2 Sobic.007G041600 - -
3 Sobic.005G066300 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
4 Sobic.001G238500 similar to Putative uncharacterized protein(PubMedID : 29862293)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed K13691: pathogen-inducible salicylic acid glucosyltransferase
5 Sobic.004G108800 cytochrome P450, putative, expressed -
6 Sobic.005G104200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.006G117500 polygalacturonase inhibitor 1 precursor, putative, expressed -
8 Sobic.002G411000 AP2 domain containing protein, expressed -
9 Sobic.004G126500 - -
10 Sobic.003G141200 receptor-like protein kinase 5 precursor, putative, expressed K13415: protein brassinosteroid insensitive 1
11 Sobic.005G066500 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
12 Sobic.001G506700 exostosin family domain containing protein, expressed -
13 Sobic.010G274400 reticuline oxidase-like protein precursor, putative, expressed -
14 Sobic.006G009700 expressed protein -
15 Sobic.005G110508 - -
16 Sobic.004G156250 - -
17 Sobic.004G312500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@nitrate reductase, putative, expressed K10534: nitrate reductase (NAD(P)H)
18 Sobic.002G235800 expressed protein -
19 Sobic.007G038500 aquaporin protein, putative, expressed K09874: aquaporin NIP
20 Sobic.005G071900 expressed protein K13457: RPM1, disease resistance protein RPM1


Gene co-expression network
sample Sobic003G153100 Sobic003G153100 Sobic009G015166 Sobic009G015166 Sobic003G153100--Sobic009G015166 Sobic007G041600 Sobic007G041600 Sobic003G153100--Sobic007G041600 Sobic005G066300 Sobic005G066300 Sobic003G153100--Sobic005G066300 Sobic001G238500 Sobic001G238500 Sobic003G153100--Sobic001G238500 Sobic004G108800 Sobic004G108800 Sobic003G153100--Sobic004G108800 Sobic005G104200 Sobic005G104200 Sobic003G153100--Sobic005G104200 Sobic006G117500 Sobic006G117500 Sobic003G153100--Sobic006G117500 Sobic002G411000 Sobic002G411000 Sobic003G153100--Sobic002G411000 Sobic004G126500 Sobic004G126500 Sobic003G153100--Sobic004G126500 Sobic009G015166--Sobic001G238500 Sobic009G015166--Sobic006G117500 Sobic009G015166--Sobic005G066300 Sobic009G015166--Sobic004G108800 Sobic009G015166--Sobic005G104200 Sobic009G015166--Sobic004G126500 Sobic009G015166--Sobic002G411000 Sobic004G156250 Sobic004G156250 Sobic009G015166--Sobic004G156250 Sobic006G009700 Sobic006G009700 Sobic009G015166--Sobic006G009700 Sobic001G173700 Sobic001G173700 Sobic007G041600--Sobic001G173700 Sobic003G052100 Sobic003G052100 Sobic007G041600--Sobic003G052100 Sobic010G220300 Sobic010G220300 Sobic007G041600--Sobic010G220300 Sobic007G041600--Sobic004G126500 Sobic007G041600--Sobic001G238500 Sobic007G041600--Sobic009G015166 Sobic007G041600--Sobic003G153100 Sobic009G079900 Sobic009G079900 Sobic007G041600--Sobic009G079900 Sobic007G172500 Sobic007G172500 Sobic007G041600--Sobic007G172500 Sobic005G066300--Sobic002G411000 Sobic004G312500 Sobic004G312500 Sobic005G066300--Sobic004G312500 Sobic001G506700 Sobic001G506700 Sobic005G066300--Sobic001G506700 Sobic005G071900 Sobic005G071900 Sobic005G066300--Sobic005G071900 Sobic010G096700 Sobic010G096700 Sobic005G066300--Sobic010G096700 Sobic005G197350 Sobic005G197350 Sobic005G066300--Sobic005G197350 Sobic006G209000 Sobic006G209000 Sobic005G066300--Sobic006G209000 Sobic002G081850 Sobic002G081850 Sobic005G066300--Sobic002G081850 Sobic005G066500 Sobic005G066500 Sobic005G066300--Sobic005G066500 Sobic001G238500--Sobic004G126500 Sobic001G238500--Sobic005G104200 Sobic001G238500--Sobic006G009700 Sobic002G238700 Sobic002G238700 Sobic001G238500--Sobic002G238700 Sobic002G019100 Sobic002G019100 Sobic001G238500--Sobic002G019100 Sobic001G348800 Sobic001G348800 Sobic001G238500--Sobic001G348800 Sobic001G238500--Sobic002G411000 Sobic001G238500--Sobic009G015166 Sobic001G238500--Sobic001G506700 Sobic005G149600 Sobic005G149600 Sobic004G108800--Sobic005G149600 Sobic005G089200 Sobic005G089200 Sobic004G108800--Sobic005G089200 Sobic007G156800 Sobic007G156800 Sobic004G108800--Sobic007G156800 Sobic004G108800--Sobic006G117500 Sobic004G108800--Sobic004G156250 Sobic003G015200 Sobic003G015200 Sobic004G108800--Sobic003G015200 Sobic004G108800--Sobic009G015166 Sobic005G152500 Sobic005G152500 Sobic004G108800--Sobic005G152500 Sobic007G038500 Sobic007G038500 Sobic004G108800--Sobic007G038500 Sobic005G104200--Sobic001G238500 Sobic001G506600 Sobic001G506600 Sobic005G104200--Sobic001G506600 Sobic005G104200--Sobic002G019100 Sobic001G503000 Sobic001G503000 Sobic005G104200--Sobic001G503000 Sobic005G104200--Sobic006G117500 Sobic005G104200--Sobic004G126500 Sobic005G104200--Sobic006G009700 Sobic005G104200--Sobic002G411000 Sobic005G104200--Sobic001G348800 Sobic006G117500--Sobic005G104200 Sobic010G274400 Sobic010G274400 Sobic006G117500--Sobic010G274400 Sobic006G117500--Sobic004G108800 Sobic006G117500--Sobic001G506600 Sobic006G117500--Sobic009G015166 Sobic006G117500--Sobic005G066300 Sobic006G117500--Sobic010G096700 Sobic006G205500 Sobic006G205500 Sobic006G117500--Sobic006G205500 Sobic002G163200 Sobic002G163200 Sobic006G117500--Sobic002G163200 Sobic002G411000--Sobic005G066300 Sobic006G108300 Sobic006G108300 Sobic002G411000--Sobic006G108300 Sobic002G411000--Sobic004G312500 Sobic002G411000--Sobic005G071900 Sobic002G411000--Sobic006G009700 Sobic002G411000--Sobic005G066500 Sobic002G411000--Sobic001G506700 Sobic002G411000--Sobic001G506600 Sobic002G411000--Sobic010G274400 Sobic004G126500--Sobic001G238500 Sobic004G126500--Sobic006G009700 Sobic004G126500--Sobic005G104200 Sobic004G126500--Sobic002G238700 Sobic004G126500--Sobic002G019100 Sobic004G126500--Sobic001G348800 Sobic008G084900 Sobic008G084900 Sobic004G126500--Sobic008G084900 Sobic004G126500--Sobic004G312500 Sobic004G126500--Sobic009G015166
Octagon: transcription factors


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