Gene annotation
Transcriptome id Sobic.003G374400.1
Synonym CLC-C, Sb03g041480, ATCLC-C
Functional annotation chloride channel protein, putative, expressed
UniProt C5XRC6
Pfam PF00571 PF00654
Panther DB PTHR11689 PTHR11689:SF84
NCBI CDD -
KEGG Orthology K05016; chloride channel 7
Gene Ontology GO:0016020; membrane GO:0006821chloride transport GO:0005247voltage-gated chloride channel activity


Orthologs (automatic annotation)
TAIR AT5G49890 : chloride channel C
RAP-DB (Rice) LOC_Os01g65500.1 : chloride channel protein, putative, expressed
MaizeGDB (Corn) Zm00025a019448 , Zm00025a026611 , Zm00025a051703
Brachypodium KQJ86813 , PNT73292
Barley HORVU3Hr1G081920.1 , HORVU3Hr1G081920.3 , HORVU3Hr1G081920.2
Wheat TraesCS5D02G456000 , TraesCS5B02G457100 , TraesCS3A02G390100 , TraesCS3D02G379600 , TraesCS5A02G449500 , TraesCS5A02G449500 , TraesCS3B02G418700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G174100 - -
2 Sobic.007G090439 - -
3 Sobic.002G303900 CPuORF22 - conserved peptide uORF-containing transcript, expressed -
4 Sobic.002G176900 proton pump interactor, putative, expressed -
5 Sobic.001G536200 expressed protein -
6 Sobic.006G218100 expressed protein -
7 Sobic.001G003400 heavy-metal-associated domain-containing protein, putative, expressed -
8 Sobic.001G332400 DUF1336 domain containing protein, expressed -
9 Sobic.004G323500 serine threonine kinase, putative, expressed -
10 Sobic.004G093000 protein kinase domain containing protein, putative, expressed -
11 Sobic.002G049500 LTPL77 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed -
12 Sobic.008G095766 - -
13 Sobic.008G131651 - -
14 Sobic.010G027400 expressed protein -
15 Sobic.004G255100 nitrate-induced NOI protein, putative, expressed -
16 Sobic.006G115800 fasciclin domain containing protein, expressed -
17 Sobic.007G184300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@aspartic proteinase-like protein 2 precursor, putative, expressed -
18 Sobic.009G037700 signal recognition particle receptor, putative, expressed K13431: signal recognition particle receptor subunit alpha
19 Sobic.010G266100 endoglucanase, putative, expressed -
20 Sobic.004G281500 fringe-related protein, putative, expressed -


Gene co-expression network
sample Sobic003G374400 Sobic003G374400 Sobic002G174100 Sobic002G174100 Sobic003G374400--Sobic002G174100 Sobic007G090439 Sobic007G090439 Sobic003G374400--Sobic007G090439 Sobic002G303900 Sobic002G303900 Sobic003G374400--Sobic002G303900 Sobic002G176900 Sobic002G176900 Sobic003G374400--Sobic002G176900 Sobic001G536200 Sobic001G536200 Sobic003G374400--Sobic001G536200 Sobic006G218100 Sobic006G218100 Sobic003G374400--Sobic006G218100 Sobic001G003400 Sobic001G003400 Sobic003G374400--Sobic001G003400 Sobic001G332400 Sobic001G332400 Sobic003G374400--Sobic001G332400 Sobic004G323500 Sobic004G323500 Sobic003G374400--Sobic004G323500 Sobic008G095766 Sobic008G095766 Sobic002G174100--Sobic008G095766 Sobic002G174100--Sobic007G090439 Sobic002G174100--Sobic003G374400 Sobic003G079532 Sobic003G079532 Sobic002G174100--Sobic003G079532 Sobic002G174100--Sobic001G003400 Sobic002G193200 Sobic002G193200 Sobic002G174100--Sobic002G193200 Sobic010G027400 Sobic010G027400 Sobic002G174100--Sobic010G027400 Sobic008G191900 Sobic008G191900 Sobic002G174100--Sobic008G191900 Sobic002G174100--Sobic001G332400 Sobic007G090439--Sobic002G174100 Sobic007G090439--Sobic010G027400 Sobic002G285001 Sobic002G285001 Sobic007G090439--Sobic002G285001 Sobic008G025550 Sobic008G025550 Sobic007G090439--Sobic008G025550 Sobic007G090439--Sobic001G003400 Sobic007G090439--Sobic003G374400 Sobic007G090439--Sobic003G079532 Sobic007G220150 Sobic007G220150 Sobic007G090439--Sobic007G220150 Sobic003G017900 Sobic003G017900 Sobic007G090439--Sobic003G017900 Sobic002G303900--Sobic003G374400 Sobic002G303900--Sobic001G536200 Sobic006G208700 Sobic006G208700 Sobic002G303900--Sobic006G208700 Sobic003G017000 Sobic003G017000 Sobic002G303900--Sobic003G017000 Sobic002G303900--Sobic002G176900 Sobic002G303900--Sobic006G218100 Sobic002G303900--Sobic007G090439 Sobic009G054200 Sobic009G054200 Sobic002G303900--Sobic009G054200 Sobic010G266100 Sobic010G266100 Sobic002G303900--Sobic010G266100 Sobic002G176900--Sobic010G266100 Sobic001G251500 Sobic001G251500 Sobic002G176900--Sobic001G251500 Sobic005G023100 Sobic005G023100 Sobic002G176900--Sobic005G023100 Sobic002G176900--Sobic003G374400 Sobic002G176900--Sobic006G218100 Sobic007G213200 Sobic007G213200 Sobic002G176900--Sobic007G213200 Sobic003G002900 Sobic003G002900 Sobic002G176900--Sobic003G002900 Sobic005G138900 Sobic005G138900 Sobic002G176900--Sobic005G138900 Sobic002G176900--Sobic001G536200 Sobic001G536200--Sobic006G218100 Sobic004G188201 Sobic004G188201 Sobic001G536200--Sobic004G188201 Sobic001G536200--Sobic003G374400 Sobic002G252700 Sobic002G252700 Sobic001G536200--Sobic002G252700 Sobic001G536200--Sobic002G303900 Sobic001G536200--Sobic002G176900 Sobic001G536200--Sobic009G054200 Sobic009G031700 Sobic009G031700 Sobic001G536200--Sobic009G031700 Sobic005G204900 Sobic005G204900 Sobic001G536200--Sobic005G204900 Sobic006G218100--Sobic007G213200 Sobic005G160900 Sobic005G160900 Sobic006G218100--Sobic005G160900 Sobic007G184300 Sobic007G184300 Sobic006G218100--Sobic007G184300 Sobic002G241900 Sobic002G241900 Sobic006G218100--Sobic002G241900 Sobic003G270700 Sobic003G270700 Sobic006G218100--Sobic003G270700 Sobic010G096500 Sobic010G096500 Sobic006G218100--Sobic010G096500 Sobic006G218100--Sobic005G138900 Sobic006G218100--Sobic010G266100 Sobic006G218100--Sobic001G536200 Sobic004G255100 Sobic004G255100 Sobic001G003400--Sobic004G255100 Sobic004G014900 Sobic004G014900 Sobic001G003400--Sobic004G014900 Sobic010G261900 Sobic010G261900 Sobic001G003400--Sobic010G261900 Sobic004G334900 Sobic004G334900 Sobic001G003400--Sobic004G334900 Sobic004G123100 Sobic004G123100 Sobic001G003400--Sobic004G123100 Sobic010G063700 Sobic010G063700 Sobic001G003400--Sobic010G063700 Sobic001G513400 Sobic001G513400 Sobic001G003400--Sobic001G513400 Sobic004G031900 Sobic004G031900 Sobic001G003400--Sobic004G031900 Sobic010G187800 Sobic010G187800 Sobic001G003400--Sobic010G187800 Sobic001G332400--Sobic008G191900 Sobic001G332400--Sobic004G031900 Sobic006G115800 Sobic006G115800 Sobic001G332400--Sobic006G115800 Sobic002G359100 Sobic002G359100 Sobic001G332400--Sobic002G359100 Sobic009G176200 Sobic009G176200 Sobic001G332400--Sobic009G176200 Sobic001G332400--Sobic010G187800 Sobic002G405300 Sobic002G405300 Sobic001G332400--Sobic002G405300 Sobic003G061600 Sobic003G061600 Sobic001G332400--Sobic003G061600 Sobic009G249400 Sobic009G249400 Sobic001G332400--Sobic009G249400 Sobic006G264700 Sobic006G264700 Sobic004G323500--Sobic006G264700 Sobic004G323500--Sobic006G115800 Sobic001G229100 Sobic001G229100 Sobic004G323500--Sobic001G229100 Sobic005G217101 Sobic005G217101 Sobic004G323500--Sobic005G217101 Sobic006G193700 Sobic006G193700 Sobic004G323500--Sobic006G193700 Sobic004G025900 Sobic004G025900 Sobic004G323500--Sobic004G025900 Sobic004G323500--Sobic010G063700 Sobic005G212900 Sobic005G212900 Sobic004G323500--Sobic005G212900 Sobic006G105500 Sobic006G105500 Sobic004G323500--Sobic006G105500
Octagon: transcription factors


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