Gene annotation
Transcriptome id Sobic.003G385500.1
Synonym ATLOX1, LOX1, Sb03g042440
Functional annotation "Lypoxygenase, probably induced by oxidative stress, up-regulated under severe drought stress" (PubMedID : 24655390)
lipoxygenase, putative, expressed
UniProt C5XES4
Pfam PF01477 PF00305
Panther DB PTHR11771 PTHR11771:SF54
NCBI CDD -
KEGG Orthology K15718; linoleate 9S-lipoxygenase
Gene Ontology GO:0005515; protein binding GO:0016702oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen


Orthologs (automatic annotation)
TAIR AT1G55020 : lipoxygenase 1
RAP-DB (Rice) LOC_Os03g52860.1 : lipoxygenase, putative, expressed
MaizeGDB (Corn) Zm00025a005096 , Zm00025a026458 , Zm00025a007722 , Zm00025a026461 , Zm00025a007723 , Zm00025a007727 , Zm00025a007726 , Zm00025a017057
Brachypodium PNT74274 , KQK13306 , KQK13307 , KQJ93839 , KQK13661 , KQK13662
Barley HORVU5Hr1G054200.1 , HORVU5Hr1G001180.8 , HORVU5Hr1G001180.1 , HORVU5Hr1G001180.3 , HORVU5Hr1G001180.2 , HORVU5Hr1G001180.5 , HORVU5Hr1G001180.7 , HORVU5Hr1G001180.6 , HORVU5Hr1G093770.11 , HORVU5Hr1G093770.10 , HORVU5Hr1G093770.13 , HORVU5Hr1G093770.12 , HORVU4Hr1G005920.15 , HORVU4Hr1G005920.16 , HORVU4Hr1G005920.17 , HORVU4Hr1G005920.10 , HORVU4Hr1G005920.11 , HORVU4Hr1G005920.12 , HORVU5Hr1G093700.18 , HORVU5Hr1G093700.19 , HORVU5Hr1G093700.16 , HORVU5Hr1G093700.17 , HORVU5Hr1G093700.14 , HORVU5Hr1G093700.15 , HORVU5Hr1G093700.12 , HORVU5Hr1G093700.13 , HORVU5Hr1G093700.10 , HORVU5Hr1G093700.11 , HORVU4Hr1G005920.29 , HORVU4Hr1G005920.21 , HORVU4Hr1G005920.20 , HORVU4Hr1G005920.23 , HORVU4Hr1G005920.22 , HORVU4Hr1G005920.25 , HORVU4Hr1G005920.24 , HORVU4Hr1G005920.27 , HORVU4Hr1G005920.26 , HORVU4Hr1G005920.38 , HORVU4Hr1G005920.39 , HORVU4Hr1G005920.36 , HORVU4Hr1G005920.37 , HORVU4Hr1G005920.35 , HORVU4Hr1G005920.32 , HORVU4Hr1G005920.33 , HORVU4Hr1G005920.30 , HORVU4Hr1G005920.31 , HORVU4Hr1G005970.1 , HORVU5Hr1G093770.9 , HORVU5Hr1G093770.8 , HORVU4Hr1G005970.2 , HORVU5Hr1G093770.5 , HORVU5Hr1G093700.5 , HORVU5Hr1G093770.7 , HORVU5Hr1G093770.6 , HORVU5Hr1G093770.3 , HORVU5Hr1G093770.2 , HORVU4Hr1G005920.49 , HORVU4Hr1G005920.48 , HORVU4Hr1G005920.43 , HORVU4Hr1G005920.42 , HORVU4Hr1G005920.41 , HORVU4Hr1G005920.40 , HORVU4Hr1G005920.47 , HORVU4Hr1G005920.46 , HORVU5Hr1G093700.8 , HORVU5Hr1G093700.9 , HORVU5Hr1G093700.4 , HORVU5Hr1G093770.4 , HORVU5Hr1G093700.6 , HORVU5Hr1G093700.7 , HORVU5Hr1G093770.1 , HORVU5Hr1G093700.1 , HORVU5Hr1G093700.2 , HORVU5Hr1G093700.3 , HORVU5Hr1G117110.2 , HORVU5Hr1G117110.1 , HORVU5Hr1G001180.11 , HORVU4Hr1G005920.58 , HORVU4Hr1G005920.59 , HORVU4Hr1G005920.50 , HORVU4Hr1G005920.51 , HORVU4Hr1G005920.52 , HORVU4Hr1G005920.53 , HORVU4Hr1G005920.54 , HORVU4Hr1G005920.55 , HORVU4Hr1G005920.56 , HORVU4Hr1G005920.57 , HORVU4Hr1G005920.8 , HORVU4Hr1G005920.9 , HORVU4Hr1G005920.6 , HORVU4Hr1G005920.7 , HORVU4Hr1G005920.5 , HORVU4Hr1G005920.2 , HORVU4Hr1G005920.3 , HORVU4Hr1G005920.1 , HORVU5Hr1G093700.24 , HORVU5Hr1G093700.23 , HORVU5Hr1G093700.22 , HORVU5Hr1G093700.21 , HORVU5Hr1G093700.20 , HORVU4Hr1G005920.65 , HORVU4Hr1G005920.64 , HORVU4Hr1G005920.61 , HORVU4Hr1G005920.60 , HORVU4Hr1G005920.63 , HORVU4Hr1G005920.62
Wheat TraesCS7A02G246200 , TraesCS3B02G602500 , TraesCS6A02G166000 , TraesCS4D02G035100 , TraesCS4D02G035100 , TraesCS5A02G378900 , TraesCS5D02G388700 , TraesCS5D02G388800 , TraesCS5D02G388800 , TraesCS5A02G007900 , TraesCS5B02G382400 , TraesCS4A02G276000 , TraesCS4B02G037900 , TraesCS4B02G037900 , TraesCS5B02G382600 , TraesCS4D02G035200 , TraesCS5D02G513100 , TraesCS5B02G006500 , TraesCS4A02G359800 , TraesCS4A02G359800 , TraesCS5A02G378800 , TraesCS5A02G378800 , TraesCS5A02G378700 , TraesCS6B02G395700 , TraesCS5A02G379000 , TraesCS4A02G275900 , TraesCS6B02G193400 , TraesCS4B02G037800 , TraesCS6D02G154600 , TraesCS5B02G382300 , TraesCS4B02G037700 , TraesCS4B02G037700 , TraesCS4B02G037700
Populus -


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cDNA sequences
Sobic.003G385500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G045000 drought-induced protein 1, putative, expressed -
2 Sobic.005G182701 - -
3 Sobic.001G056400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed K13222: BX1, indole-3-glycerol-phosphate lyase
4 Sobic.007G055600 "Production of (E)-alpha-berg-amotene, sesquisabinene A, (E)-beta-farnesene, zingiberene, beta-bisabolene and beta-sesquiphellandrene, cytoplasm"(PubMedID : 21880075)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@terpene synthase, putative, expressed K14174: beta-farnesene/exo-alpha-bergamotene synthase
5 Sobic.009G014600 Lipase class 3 family protein (At)(PubMedID : 27208977)@phospholipase, putative, expressed -
6 Sobic.001G056500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed K13222: BX1, indole-3-glycerol-phosphate lyase
7 Sobic.007G076000 Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@Cinnamyl alcohol dehydrogenase 9 CAD9 (At)(PubMedID : 27208977)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
8 Sobic.008G038100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.001G410450 - -
10 Sobic.009G115400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.002G423600 "Expressed in drought, cold and heat"(PubMedID : 29862293)@similar to WSI76 protein induced by water stress(PubMedID : 29862293)@glycosyl transferase 8 domain containing protein, putative, expressed K18819: inositol 3-alpha-galactosyltransferase
12 Sobic.001G125700 lipoxygenase, putative, expressed K15718: linoleate 9S-lipoxygenase
13 Sobic.009G233900 dehydrogenase, putative, expressed -
14 Sobic.001G012000 cytochrome P450 71E1, putative, expressed K13029: 4-hydroxyphenylacetaldehyde oxime monooxygenase
15 Sobic.006G005500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@von Willebrand factor type A domain containing protein, putative, expressed -
16 Sobic.003G310500 DUF567 domain containing protein, putative, expressed -
17 Sobic.K044407 - -
18 Sobic.004G209500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.002G040400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
20 Sobic.006G007600 polyphenol oxidase, putative, expressed -


Gene co-expression network
sample Sobic003G385500 Sobic003G385500 Sobic006G045000 Sobic006G045000 Sobic003G385500--Sobic006G045000 Sobic005G182701 Sobic005G182701 Sobic003G385500--Sobic005G182701 Sobic001G056400 Sobic001G056400 Sobic003G385500--Sobic001G056400 Sobic007G055600 Sobic007G055600 Sobic003G385500--Sobic007G055600 Sobic009G014600 Sobic009G014600 Sobic003G385500--Sobic009G014600 Sobic001G056500 Sobic001G056500 Sobic003G385500--Sobic001G056500 Sobic007G076000 Sobic007G076000 Sobic003G385500--Sobic007G076000 Sobic008G038100 Sobic008G038100 Sobic003G385500--Sobic008G038100 Sobic001G410450 Sobic001G410450 Sobic003G385500--Sobic001G410450 SobicK044407 SobicK044407 Sobic006G045000--SobicK044407 Sobic001G012000 Sobic001G012000 Sobic006G045000--Sobic001G012000 Sobic006G045000--Sobic001G056400 Sobic008G181801 Sobic008G181801 Sobic006G045000--Sobic008G181801 Sobic002G423600 Sobic002G423600 Sobic006G045000--Sobic002G423600 Sobic003G378301 Sobic003G378301 Sobic006G045000--Sobic003G378301 Sobic006G045000--Sobic005G182701 Sobic001G201800 Sobic001G201800 Sobic006G045000--Sobic001G201800 Sobic004G217700 Sobic004G217700 Sobic006G045000--Sobic004G217700 Sobic005G182701--Sobic007G055600 Sobic005G182701--Sobic007G076000 Sobic005G182701--Sobic001G056400 Sobic006G005500 Sobic006G005500 Sobic005G182701--Sobic006G005500 Sobic001G125700 Sobic001G125700 Sobic005G182701--Sobic001G125700 Sobic005G182701--Sobic009G014600 Sobic009G115400 Sobic009G115400 Sobic005G182701--Sobic009G115400 Sobic009G115300 Sobic009G115300 Sobic005G182701--Sobic009G115300 Sobic005G182701--Sobic001G012000 Sobic001G056400--Sobic005G182701 Sobic001G056400--Sobic001G012000 Sobic001G056400--Sobic007G055600 Sobic001G056400--SobicK044407 Sobic001G056400--Sobic003G378301 Sobic001G056400--Sobic007G076000 Sobic001G056400--Sobic002G423600 Sobic001G056400--Sobic001G056500 Sobic001G056400--Sobic006G045000 Sobic007G055600--Sobic005G182701 Sobic007G055600--Sobic007G076000 Sobic007G055600--Sobic006G005500 Sobic007G055600--Sobic001G125700 Sobic007G055600--Sobic009G014600 Sobic007G055600--Sobic001G056400 Sobic002G040400 Sobic002G040400 Sobic007G055600--Sobic002G040400 Sobic008G028600 Sobic008G028600 Sobic007G055600--Sobic008G028600 Sobic007G055600--Sobic009G115400 Sobic009G014600--Sobic007G076000 Sobic009G014600--Sobic007G055600 Sobic009G014600--Sobic002G040400 Sobic009G014600--Sobic006G005500 Sobic009G014600--Sobic008G028600 Sobic009G014600--Sobic001G125700 Sobic002G087500 Sobic002G087500 Sobic009G014600--Sobic002G087500 Sobic009G014600--Sobic005G182701 Sobic005G219000 Sobic005G219000 Sobic009G014600--Sobic005G219000 Sobic001G056500--Sobic009G014600 Sobic001G056500--Sobic005G182701 Sobic001G056500--Sobic007G055600 Sobic001G056500--Sobic001G056400 Sobic001G056500--Sobic004G217700 Sobic001G056500--Sobic007G076000 Sobic001G056500--Sobic002G423600 Sobic001G056500--Sobic006G005500 Sobic001G056500--Sobic001G125700 Sobic007G076000--Sobic007G055600 Sobic007G076000--Sobic005G182701 Sobic007G076000--Sobic006G005500 Sobic007G076000--Sobic001G125700 Sobic007G076000--Sobic002G040400 Sobic007G076000--Sobic008G028600 Sobic007G076000--Sobic009G014600 Sobic007G076000--Sobic005G219000 Sobic006G007650 Sobic006G007650 Sobic007G076000--Sobic006G007650 Sobic008G038100--Sobic001G056500 Sobic003G310500 Sobic003G310500 Sobic008G038100--Sobic003G310500 Sobic009G216050 Sobic009G216050 Sobic008G038100--Sobic009G216050 Sobic008G038100--Sobic009G014600 Sobic009G233900 Sobic009G233900 Sobic008G038100--Sobic009G233900 Sobic008G181300 Sobic008G181300 Sobic008G038100--Sobic008G181300 Sobic008G038100--Sobic004G217700 Sobic008G038100--Sobic003G385500 Sobic008G038100--Sobic006G045000 Sobic001G410450--Sobic001G056400 Sobic001G410450--Sobic001G012000 Sobic001G410450--Sobic005G182701 Sobic001G410450--SobicK044407 Sobic001G410450--Sobic002G423600 Sobic001G410450--Sobic007G055600 Sobic001G410450--Sobic004G217700 Sobic001G410450--Sobic006G045000 Sobic001G410450--Sobic007G076000
Octagon: transcription factors


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