Gene annotation
Transcriptome id Sobic.004G088000.1
Synonym Sb04g007280
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
expressed protein
UniProt C5XXZ2
Pfam PF12734
Panther DB PTHR35470 PTHR35470:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os06g05120.2 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G076100 - -
2 Sobic.007G058400 Superior methylation activity against resveratrol compared with that of sbOMT3(PubMedID : 25033820)@O-methyltransferase, putative, expressed -
3 Sobic.010G182200 elongation factor Tu, putative, expressed K03231: elongation factor 1-alpha
4 Sobic.010G081100 lipase, putative, expressed -
5 Sobic.009G032000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
6 Sobic.005G013500 WRKY52, expressed -
7 Sobic.004G219800 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
8 Sobic.001G330400 ZOS3-11 - C2H2 zinc finger protein, expressed -
9 Sobic.002G377000 EF hand family protein, expressed -
10 Sobic.005G103900 - -
11 Sobic.002G184300 heat shock protein DnaJ, putative, expressed -
12 Sobic.003G148300 pectinesterase, putative, expressed K01051: pectinesterase
13 Sobic.001G330200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ZOS3-12 - C2H2 zinc finger protein, expressed -
14 Sobic.001G363400 terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
15 Sobic.004G315200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
16 Sobic.003G060100 expressed protein -
17 Sobic.001G050100 Cupin domain containing protein, expressed -
18 Sobic.001G330100 ZOS3-12 - C2H2 zinc finger protein, expressed -
19 Sobic.002G066400 OsFBDUF18 - F-box and DUF domain containing protein, expressed -
20 Sobic.010G270500 GDSL-like lipase/acylhydrolase, putative, expressed -


Gene co-expression network
sample Sobic004G088000 Sobic004G088000 Sobic010G076100 Sobic010G076100 Sobic004G088000--Sobic010G076100 Sobic007G058400 Sobic007G058400 Sobic004G088000--Sobic007G058400 Sobic010G182200 Sobic010G182200 Sobic004G088000--Sobic010G182200 Sobic010G081100 Sobic010G081100 Sobic004G088000--Sobic010G081100 Sobic009G032000 Sobic009G032000 Sobic004G088000--Sobic009G032000 Sobic005G013500 Sobic005G013500 Sobic004G088000--Sobic005G013500 Sobic004G219800 Sobic004G219800 Sobic004G088000--Sobic004G219800 Sobic001G330400 Sobic001G330400 Sobic004G088000--Sobic001G330400 Sobic002G377000 Sobic002G377000 Sobic004G088000--Sobic002G377000 Sobic010G076100--Sobic004G219800 Sobic002G184300 Sobic002G184300 Sobic010G076100--Sobic002G184300 Sobic010G076100--Sobic001G330400 Sobic010G076100--Sobic004G088000 Sobic003G269000 Sobic003G269000 Sobic010G076100--Sobic003G269000 Sobic001G363400 Sobic001G363400 Sobic010G076100--Sobic001G363400 Sobic010G076100--Sobic009G032000 Sobic003G073380 Sobic003G073380 Sobic010G076100--Sobic003G073380 Sobic003G230100 Sobic003G230100 Sobic010G076100--Sobic003G230100 Sobic004G229400 Sobic004G229400 Sobic007G058400--Sobic004G229400 Sobic003G427800 Sobic003G427800 Sobic007G058400--Sobic003G427800 Sobic007G017500 Sobic007G017500 Sobic007G058400--Sobic007G017500 Sobic001G031700 Sobic001G031700 Sobic007G058400--Sobic001G031700 Sobic004G229500 Sobic004G229500 Sobic007G058400--Sobic004G229500 Sobic007G058400--Sobic005G013500 Sobic006G075400 Sobic006G075400 Sobic007G058400--Sobic006G075400 Sobic009G205500 Sobic009G205500 Sobic007G058400--Sobic009G205500 Sobic002G351300 Sobic002G351300 Sobic007G058400--Sobic002G351300 Sobic010G182600 Sobic010G182600 Sobic010G182200--Sobic010G182600 Sobic001G091801 Sobic001G091801 Sobic010G182200--Sobic001G091801 Sobic002G175100 Sobic002G175100 Sobic010G182200--Sobic002G175100 Sobic002G375100 Sobic002G375100 Sobic010G182200--Sobic002G375100 Sobic001G016400 Sobic001G016400 Sobic010G182200--Sobic001G016400 Sobic004G145801 Sobic004G145801 Sobic010G182200--Sobic004G145801 Sobic007G212600 Sobic007G212600 Sobic010G182200--Sobic007G212600 Sobic002G259000 Sobic002G259000 Sobic010G182200--Sobic002G259000 Sobic001G374700 Sobic001G374700 Sobic010G182200--Sobic001G374700 Sobic006G103000 Sobic006G103000 Sobic010G081100--Sobic006G103000 Sobic003G299300 Sobic003G299300 Sobic010G081100--Sobic003G299300 Sobic010G081100--Sobic002G351300 Sobic003G007600 Sobic003G007600 Sobic010G081100--Sobic003G007600 Sobic010G081100--Sobic009G205500 Sobic010G081100--Sobic007G058400 Sobic010G081100--Sobic007G017500 Sobic006G198700 Sobic006G198700 Sobic010G081100--Sobic006G198700 Sobic009G183900 Sobic009G183900 Sobic010G081100--Sobic009G183900 Sobic001G256700 Sobic001G256700 Sobic009G032000--Sobic001G256700 Sobic002G388900 Sobic002G388900 Sobic009G032000--Sobic002G388900 Sobic009G032000--Sobic004G219800 Sobic002G358300 Sobic002G358300 Sobic009G032000--Sobic002G358300 Sobic004G308900 Sobic004G308900 Sobic009G032000--Sobic004G308900 Sobic004G246600 Sobic004G246600 Sobic009G032000--Sobic004G246600 Sobic001G330100 Sobic001G330100 Sobic009G032000--Sobic001G330100 Sobic009G032000--Sobic005G013500 Sobic002G395300 Sobic002G395300 Sobic009G032000--Sobic002G395300 Sobic005G013500--Sobic004G229500 Sobic005G013500--Sobic009G183900 Sobic005G013500--Sobic004G246600 Sobic005G013500--Sobic009G032000 Sobic009G144700 Sobic009G144700 Sobic005G013500--Sobic009G144700 Sobic004G097100 Sobic004G097100 Sobic005G013500--Sobic004G097100 Sobic005G013500--Sobic001G363400 Sobic004G294400 Sobic004G294400 Sobic005G013500--Sobic004G294400 Sobic004G108200 Sobic004G108200 Sobic005G013500--Sobic004G108200 Sobic004G219800--Sobic001G256700 Sobic004G219800--Sobic001G330100 Sobic004G352000 Sobic004G352000 Sobic004G219800--Sobic004G352000 Sobic004G219800--Sobic001G330400 Sobic004G219800--Sobic009G032000 Sobic008G187001 Sobic008G187001 Sobic004G219800--Sobic008G187001 Sobic004G219800--Sobic002G388900 Sobic004G219800--Sobic007G017500 Sobic004G219800--Sobic006G075400 Sobic003G268600 Sobic003G268600 Sobic001G330400--Sobic003G268600 Sobic001G330400--Sobic006G075400 Sobic001G330400--Sobic004G219800 Sobic001G330400--Sobic007G017500 Sobic009G122400 Sobic009G122400 Sobic001G330400--Sobic009G122400 Sobic001G330400--Sobic004G294400 Sobic001G318700 Sobic001G318700 Sobic001G330400--Sobic001G318700 Sobic002G220000 Sobic002G220000 Sobic001G330400--Sobic002G220000 Sobic001G330400--Sobic001G330100 Sobic001G082300 Sobic001G082300 Sobic002G377000--Sobic001G082300 Sobic002G377000--Sobic004G088000 Sobic003G406900 Sobic003G406900 Sobic002G377000--Sobic003G406900 Sobic004G164500 Sobic004G164500 Sobic002G377000--Sobic004G164500 Sobic006G241300 Sobic006G241300 Sobic002G377000--Sobic006G241300 Sobic004G229300 Sobic004G229300 Sobic002G377000--Sobic004G229300 Sobic002G205300 Sobic002G205300 Sobic002G377000--Sobic002G205300 Sobic001G311000 Sobic001G311000 Sobic002G377000--Sobic001G311000 Sobic001G253600 Sobic001G253600 Sobic002G377000--Sobic001G253600
Octagon: transcription factors


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