Gene annotation
Transcriptome id Sobic.002G377000.1
Synonym MSS3
Functional annotation EF hand family protein, expressed
UniProt C5XE12
Pfam PF13202
Panther DB PTHR10891 PTHR10891:SF597
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005509; calcium ion binding


Orthologs (automatic annotation)
TAIR AT2G43290 : Calcium-binding EF-hand family protein
RAP-DB (Rice) LOC_Os07g42730.1 : EF hand family protein, expressed
MaizeGDB (Corn) Zm00025a015226
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G377000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G082300 cytochrome P450, putative, expressed -
2 Sobic.004G088000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.003G406900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
4 Sobic.004G164500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
5 Sobic.006G241300 expressed protein -
6 Sobic.004G229300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@phosphate-induced protein 1 conserved region domain containing protein, expressed -
7 Sobic.002G205300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
8 Sobic.001G311000 expansin precursor, putative, expressed -
9 Sobic.001G253600 expressed protein -
10 Sobic.009G065000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA15 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
11 Sobic.001G032100 BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
12 Sobic.003G293900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@plant-specific domain TIGR01615 family protein, expressed -
13 Sobic.005G103900 - -
14 Sobic.002G278300 thaumatin, putative, expressed -
15 Sobic.009G100800 expressed protein -
16 Sobic.010G228600 LSM domain containing protein, expressed -
17 Sobic.008G106800 isoflavone reductase, putative, expressed -
18 Sobic.004G157300 "glycerophosphodiester phosphodiesterase, up-regulated under drought stress, involved in the final step of the choline biosynthesis pathway, mapped into a QTL involved in pre-flowering drought tolerance (QSTG2_4)"(PubMedID : 24655390)@glycerophosphoryl diester phosphodiesterase family protein, putative, expressed -
19 Sobic.007G177100 "Syntelog of ZmMYB42, bind to the COMT1, CSE, 4CL2, F5H, and SbMYB42 promroter region"(PubMedID : 30387379)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
20 Sobic.003G402300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@P21-Rho-binding domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G377000 Sobic002G377000 Sobic001G082300 Sobic001G082300 Sobic002G377000--Sobic001G082300 Sobic004G088000 Sobic004G088000 Sobic002G377000--Sobic004G088000 Sobic003G406900 Sobic003G406900 Sobic002G377000--Sobic003G406900 Sobic004G164500 Sobic004G164500 Sobic002G377000--Sobic004G164500 Sobic006G241300 Sobic006G241300 Sobic002G377000--Sobic006G241300 Sobic004G229300 Sobic004G229300 Sobic002G377000--Sobic004G229300 Sobic002G205300 Sobic002G205300 Sobic002G377000--Sobic002G205300 Sobic001G311000 Sobic001G311000 Sobic002G377000--Sobic001G311000 Sobic001G253600 Sobic001G253600 Sobic002G377000--Sobic001G253600 Sobic001G082300--Sobic002G377000 Sobic001G032100 Sobic001G032100 Sobic001G082300--Sobic001G032100 Sobic002G017300 Sobic002G017300 Sobic001G082300--Sobic002G017300 Sobic008G126200 Sobic008G126200 Sobic001G082300--Sobic008G126200 Sobic003G296600 Sobic003G296600 Sobic001G082300--Sobic003G296600 Sobic006G194150 Sobic006G194150 Sobic001G082300--Sobic006G194150 Sobic003G328800 Sobic003G328800 Sobic001G082300--Sobic003G328800 Sobic001G082300--Sobic004G164500 Sobic006G184300 Sobic006G184300 Sobic001G082300--Sobic006G184300 Sobic010G076100 Sobic010G076100 Sobic004G088000--Sobic010G076100 Sobic007G058400 Sobic007G058400 Sobic004G088000--Sobic007G058400 Sobic010G182200 Sobic010G182200 Sobic004G088000--Sobic010G182200 Sobic010G081100 Sobic010G081100 Sobic004G088000--Sobic010G081100 Sobic009G032000 Sobic009G032000 Sobic004G088000--Sobic009G032000 Sobic005G013500 Sobic005G013500 Sobic004G088000--Sobic005G013500 Sobic004G219800 Sobic004G219800 Sobic004G088000--Sobic004G219800 Sobic001G330400 Sobic001G330400 Sobic004G088000--Sobic001G330400 Sobic004G088000--Sobic002G377000 Sobic001G225200 Sobic001G225200 Sobic003G406900--Sobic001G225200 Sobic006G191600 Sobic006G191600 Sobic003G406900--Sobic006G191600 Sobic001G225300 Sobic001G225300 Sobic003G406900--Sobic001G225300 Sobic003G406900--Sobic006G241300 Sobic002G254200 Sobic002G254200 Sobic003G406900--Sobic002G254200 Sobic009G065000 Sobic009G065000 Sobic003G406900--Sobic009G065000 Sobic003G406900--Sobic001G311000 Sobic003G048000 Sobic003G048000 Sobic003G406900--Sobic003G048000 Sobic003G406900--Sobic002G205300 Sobic001G471900 Sobic001G471900 Sobic004G164500--Sobic001G471900 Sobic004G164500--Sobic001G311000 Sobic004G164500--Sobic009G065000 Sobic008G106800 Sobic008G106800 Sobic004G164500--Sobic008G106800 Sobic001G056700 Sobic001G056700 Sobic004G164500--Sobic001G056700 Sobic010G154150 Sobic010G154150 Sobic004G164500--Sobic010G154150 Sobic006G257900 Sobic006G257900 Sobic004G164500--Sobic006G257900 Sobic010G228600 Sobic010G228600 Sobic004G164500--Sobic010G228600 Sobic007G177100 Sobic007G177100 Sobic004G164500--Sobic007G177100 Sobic006G241300--Sobic003G406900 Sobic003G408200 Sobic003G408200 Sobic006G241300--Sobic003G408200 Sobic006G241300--Sobic004G164500 Sobic005G026800 Sobic005G026800 Sobic006G241300--Sobic005G026800 Sobic006G241300--Sobic003G296600 Sobic006G241300--Sobic002G254200 Sobic002G278300 Sobic002G278300 Sobic006G241300--Sobic002G278300 Sobic003G293900 Sobic003G293900 Sobic006G241300--Sobic003G293900 Sobic006G241300--Sobic006G191600 Sobic010G104300 Sobic010G104300 Sobic004G229300--Sobic010G104300 Sobic007G090463 Sobic007G090463 Sobic004G229300--Sobic007G090463 Sobic009G194400 Sobic009G194400 Sobic004G229300--Sobic009G194400 Sobic002G269100 Sobic002G269100 Sobic004G229300--Sobic002G269100 Sobic001G138200 Sobic001G138200 Sobic004G229300--Sobic001G138200 Sobic005G118100 Sobic005G118100 Sobic004G229300--Sobic005G118100 Sobic001G425500 Sobic001G425500 Sobic004G229300--Sobic001G425500 Sobic004G229300--Sobic002G377000 Sobic001G425600 Sobic001G425600 Sobic004G229300--Sobic001G425600 Sobic001G037000 Sobic001G037000 Sobic002G205300--Sobic001G037000 Sobic005G103900 Sobic005G103900 Sobic002G205300--Sobic005G103900 Sobic002G282400 Sobic002G282400 Sobic002G205300--Sobic002G282400 Sobic001G422900 Sobic001G422900 Sobic002G205300--Sobic001G422900 Sobic005G229700 Sobic005G229700 Sobic002G205300--Sobic005G229700 Sobic007G107000 Sobic007G107000 Sobic002G205300--Sobic007G107000 Sobic009G016201 Sobic009G016201 Sobic002G205300--Sobic009G016201 Sobic003G249800 Sobic003G249800 Sobic002G205300--Sobic003G249800 Sobic009G070400 Sobic009G070400 Sobic002G205300--Sobic009G070400 Sobic001G311000--Sobic004G164500 Sobic001G311000--Sobic009G065000 Sobic001G311000--Sobic006G191600 Sobic001G311000--Sobic007G177100 Sobic003G402300 Sobic003G402300 Sobic001G311000--Sobic003G402300 Sobic007G126100 Sobic007G126100 Sobic001G311000--Sobic007G126100 Sobic001G311000--Sobic008G106800 Sobic001G311000--Sobic006G257900 Sobic001G311000--Sobic003G293900 Sobic001G253600--Sobic010G228600 Sobic010G144400 Sobic010G144400 Sobic001G253600--Sobic010G144400 Sobic001G253600--Sobic001G056700 Sobic002G258100 Sobic002G258100 Sobic001G253600--Sobic002G258100 Sobic001G253600--Sobic001G471900 Sobic001G149700 Sobic001G149700 Sobic001G253600--Sobic001G149700 Sobic001G253600--Sobic008G106800 Sobic007G126200 Sobic007G126200 Sobic001G253600--Sobic007G126200 Sobic003G116700 Sobic003G116700 Sobic001G253600--Sobic003G116700
Octagon: transcription factors


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