Gene annotation
Transcriptome id Sobic.004G094600.3,Sobic.004G094600.2,Sobic.004G094600.4,Sobic.004G094600.1,Sobic.004G094600.5
Synonym Sb04g007795
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
helix-loop-helix DNA-binding domain containing protein, expressed
UniProt A0A1Z5RLM6 , A0A194YNQ3 , A0A1Z5RLM3 , A0A1Z5RM34 , A0A1Z5RM63
Pfam PF00010
Panther DB PTHR12565 PTHR12565:SF150
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G56960 : basic helix-loop-helix (bHLH) DNA-binding family protein
RAP-DB (Rice) LOC_Os02g12820.1 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium PNT66187
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G195200 - -
2 Sobic.002G195100 - -
3 Sobic.002G168150 - -
4 Sobic.004G245300 - -
5 Sobic.007G059100 O-methyltransferase, putative, expressed K13066: E2.1.1.68, caffeic acid 3-O-methyltransferase
6 Sobic.007G058800 O-methyltransferase, putative, expressed K13066: E2.1.1.68, caffeic acid 3-O-methyltransferase
7 Sobic.008G081200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR3-A, putative, expressed -
8 Sobic.002G327700 TKL_IRAK_DUF26-lc.15 - DUF26 kinases have homology to DUF26 containing loci, expressed -
9 Sobic.007G004850 - -
10 Sobic.007G214300 OsWAK14 - OsWAK receptor-like protein kinase, expressed -
11 Sobic.009G254600 hydrolase, alpha/beta fold family domain containing protein, expressed -
12 Sobic.001G189100 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
13 Sobic.001G189100 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
14 Sobic.003G237600 expressed protein -
15 Sobic.003G069000 transferase family protein, putative, expressed -
16 Sobic.003G069100 regulator of ribonuclease, putative, expressed -
17 Sobic.008G106200 cytochrome P450, putative, expressed -
18 Sobic.004G035700 - -
19 Sobic.005G065500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease 1 precursor, putative, expressed -
20 Sobic.010G183100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@agenet domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic004G094600 Sobic004G094600 Sobic002G195200 Sobic002G195200 Sobic004G094600--Sobic002G195200 Sobic002G195100 Sobic002G195100 Sobic004G094600--Sobic002G195100 Sobic002G168150 Sobic002G168150 Sobic004G094600--Sobic002G168150 Sobic004G245300 Sobic004G245300 Sobic004G094600--Sobic004G245300 Sobic007G059100 Sobic007G059100 Sobic004G094600--Sobic007G059100 Sobic007G058800 Sobic007G058800 Sobic004G094600--Sobic007G058800 Sobic008G081200 Sobic008G081200 Sobic004G094600--Sobic008G081200 Sobic002G327700 Sobic002G327700 Sobic004G094600--Sobic002G327700 Sobic007G004850 Sobic007G004850 Sobic004G094600--Sobic007G004850 Sobic002G195200--Sobic002G195100 Sobic002G195200--Sobic004G245300 Sobic007G214300 Sobic007G214300 Sobic002G195200--Sobic007G214300 Sobic002G195300 Sobic002G195300 Sobic002G195200--Sobic002G195300 Sobic002G195200--Sobic007G058800 Sobic002G023000 Sobic002G023000 Sobic002G195200--Sobic002G023000 Sobic005G065500 Sobic005G065500 Sobic002G195200--Sobic005G065500 Sobic002G195200--Sobic004G094600 Sobic007G215700 Sobic007G215700 Sobic002G195200--Sobic007G215700 Sobic006G006700 Sobic006G006700 Sobic002G195100--Sobic006G006700 Sobic002G195100--Sobic002G195200 Sobic002G195100--Sobic004G245300 Sobic002G195100--Sobic005G065500 Sobic002G195100--Sobic002G023000 Sobic003G237600 Sobic003G237600 Sobic002G195100--Sobic003G237600 Sobic001G189100 Sobic001G189100 Sobic002G195100--Sobic001G189100 Sobic002G195100--Sobic007G214300 Sobic002G168150--Sobic004G094600 Sobic005G202600 Sobic005G202600 Sobic002G168150--Sobic005G202600 Sobic002G168150--Sobic008G081200 Sobic002G168150--Sobic004G245300 Sobic010G030800 Sobic010G030800 Sobic002G168150--Sobic010G030800 Sobic003G231800 Sobic003G231800 Sobic002G168150--Sobic003G231800 Sobic003G235500 Sobic003G235500 Sobic002G168150--Sobic003G235500 Sobic002G168150--Sobic007G004850 Sobic009G254600 Sobic009G254600 Sobic002G168150--Sobic009G254600 Sobic004G245300--Sobic005G065500 Sobic004G245300--Sobic009G254600 Sobic004G245300--Sobic002G195200 Sobic004G245300--Sobic002G195100 Sobic004G223500 Sobic004G223500 Sobic004G245300--Sobic004G223500 Sobic004G018900 Sobic004G018900 Sobic004G245300--Sobic004G018900 Sobic004G245300--Sobic007G214300 Sobic004G245300--Sobic002G195300 Sobic010G038500 Sobic010G038500 Sobic004G245300--Sobic010G038500 Sobic007G059100--Sobic007G058800 Sobic007G059100--Sobic002G023000 Sobic010G240400 Sobic010G240400 Sobic007G059100--Sobic010G240400 Sobic007G059100--Sobic002G327700 Sobic007G059100--Sobic002G195200 Sobic007G058900 Sobic007G058900 Sobic007G059100--Sobic007G058900 Sobic010G231000 Sobic010G231000 Sobic007G059100--Sobic010G231000 Sobic004G258300 Sobic004G258300 Sobic007G059100--Sobic004G258300 Sobic005G126100 Sobic005G126100 Sobic007G059100--Sobic005G126100 Sobic007G058800--Sobic007G059100 Sobic007G058800--Sobic002G023000 Sobic007G058800--Sobic002G195200 Sobic007G058800--Sobic002G195100 Sobic007G058800--Sobic002G327700 Sobic007G058800--Sobic007G214300 Sobic007G058800--Sobic004G258300 Sobic007G058800--Sobic007G058900 Sobic007G058800--Sobic010G240400 Sobic008G081200--Sobic010G038500 Sobic010G183100 Sobic010G183100 Sobic008G081200--Sobic010G183100 Sobic008G081200--Sobic009G254600 Sobic001G068400 Sobic001G068400 Sobic008G081200--Sobic001G068400 Sobic002G040100 Sobic002G040100 Sobic008G081200--Sobic002G040100 Sobic004G035700 Sobic004G035700 Sobic008G081200--Sobic004G035700 Sobic003G199800 Sobic003G199800 Sobic008G081200--Sobic003G199800 Sobic007G189700 Sobic007G189700 Sobic008G081200--Sobic007G189700 Sobic010G276400 Sobic010G276400 Sobic008G081200--Sobic010G276400 Sobic002G327700--Sobic004G258300 Sobic002G327800 Sobic002G327800 Sobic002G327700--Sobic002G327800 Sobic002G327900 Sobic002G327900 Sobic002G327700--Sobic002G327900 Sobic008G146700 Sobic008G146700 Sobic002G327700--Sobic008G146700 Sobic002G327700--Sobic007G058800 Sobic002G327700--Sobic007G059100 Sobic002G327700--Sobic002G195200 Sobic001G184100 Sobic001G184100 Sobic002G327700--Sobic001G184100 Sobic008G182900 Sobic008G182900 Sobic002G327700--Sobic008G182900 Sobic007G004850--Sobic003G231800 Sobic009G244300 Sobic009G244300 Sobic007G004850--Sobic009G244300 Sobic004G267000 Sobic004G267000 Sobic007G004850--Sobic004G267000 Sobic007G004850--Sobic010G183100 Sobic008G104601 Sobic008G104601 Sobic007G004850--Sobic008G104601 Sobic007G004850--Sobic008G081200 Sobic009G244600 Sobic009G244600 Sobic007G004850--Sobic009G244600 Sobic007G004850--Sobic007G214300 Sobic007G004850--Sobic009G254600
Octagon: transcription factors


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