Gene annotation
Transcriptome id Sobic.004G211200.1
Synonym SbBBX7, Sb04g025660, ATCOL5, B-box (BBX) protein, SbBBX7;B-box (BBX) protein, COL5
Functional annotation B-box (BBX) protein (PubMedID : 30626335)
down-regulated TF in developmental senescence (PubMedID : 27586543)
CCT/B-box zinc finger protein, putative, expressed
UniProt C5XXA8
Pfam PF00643 PF06203
Panther DB PTHR31319 PTHR31319:SF8
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005622intracellular GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G24930 : CONSTANS-like 4
RAP-DB (Rice) LOC_Os02g39710.1 : CCT/B-box zinc finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a054727 , Zm00025a029888 , Zm00025a031908 , Zm00025a019184 , Zm00025a056392 , Zm00025a010808 , Zm00025a021217
Brachypodium KQK13611 , PNT61381 , PNT74254 , KQK00284 , KQJ83376
Barley HORVU2Hr1G085910.21 , HORVU2Hr1G085910.22 , HORVU6Hr1G056000.2 , HORVU6Hr1G056000.1
Wheat TraesCS2B02G372000 , TraesCS6B02G248400 , TraesCS6D02G140900 , TraesCS6D02G140900 , TraesCS2D02G351900 , TraesCS2A02G353900 , TraesCS6A02G218900 , TraesCS6D02G202000
Populus -


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cDNA sequences
Sobic.004G211200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G066600 mTERF domain containing protein, expressed -
2 Sobic.001G070500 Photosystem I reaction center subunit III(PubMedID : 26186930)@photosystem I subunit F(PubMedID : 26465154)@photosystem I subunit F(PubMedID : 26465154)@Photosystem I subunit F(PubMedID : 29017446)@photosystem I reaction center subunit III, chloroplast precursor, putative, expressed K02694: photosystem I subunit III
3 Sobic.001G435500 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed -
4 Sobic.002G033900 Photosystem I reaction center subunit psaK(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K02698: photosystem I subunit X
5 Sobic.009G229700 Photosystem I reaction center subunit VI(PubMedID : 26186930)@expressed protein K02695: photosystem I subunit VI
6 Sobic.006G073500 hypothetical protein SORBIDRAFT_06g016090(PubMedID : 26186930)@Photosystem I subunit O PSI-O (At)(PubMedID : 27208977)@membrane protein, putative, expressed K14332: photosystem I subunit PsaO
7 Sobic.004G272600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
8 Sobic.008G036350 - -
9 Sobic.010G128000 aspartic proteinase nepenthesin-2 precursor, putative, expressed -
10 Sobic.007G220700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@SAM dependent carboxyl methyltransferase, putative, expressed -
11 Sobic.009G216600 - -
12 Sobic.010G189300 Chorophyll a/b binding protein 8(PubMedID : 26186930)@photosystem I light harvesting complex gene 3(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08909: light-harvesting complex I chlorophyll a/b binding protein 3
13 Sobic.002G242000 Photosystem I reaction center subunit V(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K08905: photosystem I subunit V
14 Sobic.004G056900 Chorophyll a/b binding protein 1B-21(PubMedID : 26186930)@Light harvesting complex-I subunit A4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08907: light-harvesting complex I chlorophyll a/b binding protein 1
15 Sobic.003G163700 Glutaredoxin family protein (Os)(PubMedID : 27208977)@expressed protein K03676: grxC, GLRX, glutaredoxin 3
16 Sobic.001G274600 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
17 Sobic.005G152600 - -
18 Sobic.003G052500 Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed K02699: photosystem I subunit XI
19 Sobic.001G364100 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
20 Sobic.002G082950 - -


Gene co-expression network
sample Sobic004G211200 Sobic004G211200 Sobic001G066600 Sobic001G066600 Sobic004G211200--Sobic001G066600 Sobic001G070500 Sobic001G070500 Sobic004G211200--Sobic001G070500 Sobic001G435500 Sobic001G435500 Sobic004G211200--Sobic001G435500 Sobic002G033900 Sobic002G033900 Sobic004G211200--Sobic002G033900 Sobic009G229700 Sobic009G229700 Sobic004G211200--Sobic009G229700 Sobic006G073500 Sobic006G073500 Sobic004G211200--Sobic006G073500 Sobic004G272600 Sobic004G272600 Sobic004G211200--Sobic004G272600 Sobic008G036350 Sobic008G036350 Sobic004G211200--Sobic008G036350 Sobic010G128000 Sobic010G128000 Sobic004G211200--Sobic010G128000 Sobic001G066600--Sobic009G229700 Sobic009G165200 Sobic009G165200 Sobic001G066600--Sobic009G165200 Sobic010G189300 Sobic010G189300 Sobic001G066600--Sobic010G189300 Sobic001G066600--Sobic002G033900 Sobic008G117300 Sobic008G117300 Sobic001G066600--Sobic008G117300 Sobic005G152600 Sobic005G152600 Sobic001G066600--Sobic005G152600 Sobic001G066600--Sobic001G070500 Sobic001G066600--Sobic006G073500 Sobic002G352100 Sobic002G352100 Sobic001G066600--Sobic002G352100 Sobic001G070500--Sobic002G033900 Sobic001G070500--Sobic006G073500 Sobic004G056900 Sobic004G056900 Sobic001G070500--Sobic004G056900 Sobic001G070500--Sobic010G189300 Sobic001G070500--Sobic009G229700 Sobic002G242000 Sobic002G242000 Sobic001G070500--Sobic002G242000 Sobic001G046900 Sobic001G046900 Sobic001G070500--Sobic001G046900 Sobic007G136900 Sobic007G136900 Sobic001G070500--Sobic007G136900 Sobic003G052500 Sobic003G052500 Sobic001G070500--Sobic003G052500 Sobic001G435500--Sobic001G070500 Sobic001G435500--Sobic010G189300 Sobic005G099700 Sobic005G099700 Sobic001G435500--Sobic005G099700 Sobic001G435500--Sobic007G136900 Sobic001G435500--Sobic002G033900 Sobic001G435500--Sobic004G056900 Sobic001G435500--Sobic009G229700 Sobic001G435500--Sobic001G066600 Sobic001G435500--Sobic006G073500 Sobic002G033900--Sobic006G073500 Sobic002G033900--Sobic009G229700 Sobic002G033900--Sobic001G070500 Sobic002G033900--Sobic001G046900 Sobic005G087000 Sobic005G087000 Sobic002G033900--Sobic005G087000 Sobic002G033900--Sobic004G056900 Sobic002G033900--Sobic010G189300 Sobic010G241000 Sobic010G241000 Sobic002G033900--Sobic010G241000 Sobic002G033900--Sobic003G052500 Sobic009G229700--Sobic006G073500 Sobic009G229700--Sobic002G033900 Sobic009G229700--Sobic005G087000 Sobic009G229700--Sobic001G046900 Sobic009G229700--Sobic001G070500 Sobic009G229700--Sobic010G189300 Sobic009G229700--Sobic004G056900 Sobic009G229700--Sobic005G152600 Sobic009G229700--Sobic002G352100 Sobic006G073500--Sobic002G033900 Sobic006G073500--Sobic009G229700 Sobic006G073500--Sobic005G087000 Sobic006G073500--Sobic001G070500 Sobic006G073500--Sobic001G046900 Sobic006G073500--Sobic004G056900 Sobic006G073500--Sobic010G189300 Sobic006G073500--Sobic010G241000 Sobic006G073500--Sobic003G052500 Sobic004G272600--Sobic001G070500 Sobic004G272600--Sobic010G189300 Sobic004G272600--Sobic003G052500 Sobic004G272600--Sobic002G033900 Sobic004G272600--Sobic006G073500 Sobic004G071800 Sobic004G071800 Sobic004G272600--Sobic004G071800 Sobic004G235200 Sobic004G235200 Sobic004G272600--Sobic004G235200 Sobic008G015100 Sobic008G015100 Sobic004G272600--Sobic008G015100 Sobic004G272600--Sobic009G229700 Sobic008G036300 Sobic008G036300 Sobic008G036350--Sobic008G036300 Sobic005G167500 Sobic005G167500 Sobic008G036350--Sobic005G167500 Sobic005G192600 Sobic005G192600 Sobic008G036350--Sobic005G192600 Sobic008G036350--Sobic001G435500 Sobic001G338700 Sobic001G338700 Sobic008G036350--Sobic001G338700 Sobic008G036350--Sobic004G056900 Sobic008G036350--Sobic001G070500 Sobic001G498300 Sobic001G498300 Sobic008G036350--Sobic001G498300 Sobic008G036350--Sobic002G242000 Sobic010G128000--Sobic001G435500 Sobic010G128000--Sobic001G066600 Sobic010G128000--Sobic008G117300 Sobic010G128000--Sobic009G229700 Sobic007G090475 Sobic007G090475 Sobic010G128000--Sobic007G090475 Sobic010G128000--Sobic001G070500 Sobic010G128000--Sobic010G189300 Sobic001G260850 Sobic001G260850 Sobic010G128000--Sobic001G260850 Sobic010G128000--Sobic002G033900
Octagon: transcription factors


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