Gene annotation
Transcriptome id Sobic.004G316500.3,Sobic.004G316500.4,Sobic.004G316500.2
Synonym NFYA5, SbNF-YA6, NF-YA5, Nuclear Factor Y, Sb04g034760
Functional annotation tentative name (PubMedID : 31536532)
nuclear transcription factor Y subunit, putative, expressed
UniProt A0A1Z5RQ72 , A0A1Z5RQZ6 , A0A1Z5RQU7
Pfam PF02045
Panther DB PTHR12632 PTHR12632:SF10
NCBI CDD -
KEGG Orthology K08064; NFYA, nuclear transcription factor Y, alpha
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT1G54160 : nuclear factor Y, subunit A5
RAP-DB (Rice) LOC_Os02g53620.1 : nuclear transcription factor Y subunit, putative, expressed
MaizeGDB (Corn) Zm00025a022307
Brachypodium -
Barley HORVU6Hr1G081080.3 , HORVU6Hr1G081080.2 , HORVU6Hr1G081080.1 , HORVU6Hr1G081080.6 , HORVU6Hr1G081080.5 , HORVU6Hr1G081080.4 , HORVU6Hr1G081080.9 , HORVU6Hr1G081080.8 , HORVU6Hr1G081080.10 , HORVU6Hr1G081080.12 , HORVU6Hr1G081080.11
Wheat TraesCS6A02G335400 , TraesCS6D02G315300
Populus -


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cDNA sequences
Sobic.004G316500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G009500 transporter, major facilitator family, putative, expressed K02575: NRT, narK, nrtP, MFS transporter, NNP family, nitrate/nitrite transporter
2 Sobic.001G067100 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
3 Sobic.010G113100 cytokinin-O-glucosyltransferase 2, putative, expressed -
4 Sobic.007G047500 B3 DNA binding domain containing protein, expressed -
5 Sobic.002G361800 expressed protein -
6 Sobic.002G042200 gibberellin receptor GID1L2, putative, expressed -
7 Sobic.001G183700 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
8 Sobic.006G086700 protein kinase family protein, putative, expressed -
9 Sobic.001G360400 peroxidase precursor, putative, expressed K00430: peroxidase
10 Sobic.002G101400 erythronate-4-phosphate dehydrogenase domain containing protein, expressed -
11 Sobic.005G065900 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
12 Sobic.006G251400 heavy metal-associated domain containing protein, expressed -
13 Sobic.002G415000 POEI49 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
14 Sobic.009G009200 terpene synthase, putative, expressed -
15 Sobic.003G152200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
16 Sobic.001G506800 exostosin family domain containing protein, expressed -
17 Sobic.003G015300 expressed protein -
18 Sobic.005G038300 embryogenesis transmembrane protein, putative, expressed -
19 Sobic.010G070300 DNA binding protein, putative, expressed -
20 Sobic.008G164450 - -


Gene co-expression network
sample Sobic004G316500 Sobic004G316500 Sobic004G009500 Sobic004G009500 Sobic004G316500--Sobic004G009500 Sobic001G067100 Sobic001G067100 Sobic004G316500--Sobic001G067100 Sobic010G113100 Sobic010G113100 Sobic004G316500--Sobic010G113100 Sobic007G047500 Sobic007G047500 Sobic004G316500--Sobic007G047500 Sobic002G361800 Sobic002G361800 Sobic004G316500--Sobic002G361800 Sobic002G042200 Sobic002G042200 Sobic004G316500--Sobic002G042200 Sobic001G183700 Sobic001G183700 Sobic004G316500--Sobic001G183700 Sobic006G086700 Sobic006G086700 Sobic004G316500--Sobic006G086700 Sobic001G360400 Sobic001G360400 Sobic004G316500--Sobic001G360400 Sobic005G038300 Sobic005G038300 Sobic004G009500--Sobic005G038300 Sobic002G101400 Sobic002G101400 Sobic004G009500--Sobic002G101400 Sobic007G176000 Sobic007G176000 Sobic004G009500--Sobic007G176000 Sobic007G057400 Sobic007G057400 Sobic004G009500--Sobic007G057400 Sobic007G030501 Sobic007G030501 Sobic004G009500--Sobic007G030501 Sobic004G009500--Sobic010G113100 Sobic005G046700 Sobic005G046700 Sobic004G009500--Sobic005G046700 Sobic007G165400 Sobic007G165400 Sobic004G009500--Sobic007G165400 Sobic003G015300 Sobic003G015300 Sobic004G009500--Sobic003G015300 Sobic008G011700 Sobic008G011700 Sobic001G067100--Sobic008G011700 Sobic003G426500 Sobic003G426500 Sobic001G067100--Sobic003G426500 Sobic003G203600 Sobic003G203600 Sobic001G067100--Sobic003G203600 Sobic007G100700 Sobic007G100700 Sobic001G067100--Sobic007G100700 Sobic003G182200 Sobic003G182200 Sobic001G067100--Sobic003G182200 Sobic002G185800 Sobic002G185800 Sobic001G067100--Sobic002G185800 Sobic010G066800 Sobic010G066800 Sobic001G067100--Sobic010G066800 Sobic003G228600 Sobic003G228600 Sobic001G067100--Sobic003G228600 Sobic001G067100--Sobic007G165400 Sobic010G113100--Sobic002G101400 Sobic010G028100 Sobic010G028100 Sobic010G113100--Sobic010G028100 Sobic006G092700 Sobic006G092700 Sobic010G113100--Sobic006G092700 Sobic008G164450 Sobic008G164450 Sobic010G113100--Sobic008G164450 Sobic006G135300 Sobic006G135300 Sobic010G113100--Sobic006G135300 Sobic010G113100--Sobic007G057400 Sobic002G216100 Sobic002G216100 Sobic010G113100--Sobic002G216100 Sobic001G506800 Sobic001G506800 Sobic010G113100--Sobic001G506800 Sobic001G360500 Sobic001G360500 Sobic010G113100--Sobic001G360500 Sobic007G047500--Sobic001G360400 Sobic010G070300 Sobic010G070300 Sobic007G047500--Sobic010G070300 Sobic007G047500--Sobic010G113100 Sobic007G047500--Sobic007G030501 Sobic004G212600 Sobic004G212600 Sobic007G047500--Sobic004G212600 Sobic010G206800 Sobic010G206800 Sobic007G047500--Sobic010G206800 Sobic003G351600 Sobic003G351600 Sobic007G047500--Sobic003G351600 Sobic010G204200 Sobic010G204200 Sobic007G047500--Sobic010G204200 Sobic007G021900 Sobic007G021900 Sobic007G047500--Sobic007G021900 Sobic005G045600 Sobic005G045600 Sobic002G361800--Sobic005G045600 Sobic002G361800--Sobic002G042200 Sobic002G361800--Sobic007G030501 Sobic002G361800--Sobic002G216100 Sobic005G107800 Sobic005G107800 Sobic002G361800--Sobic005G107800 Sobic003G368600 Sobic003G368600 Sobic002G361800--Sobic003G368600 Sobic004G258900 Sobic004G258900 Sobic002G361800--Sobic004G258900 Sobic009G154700 Sobic009G154700 Sobic002G361800--Sobic009G154700 Sobic009G009200 Sobic009G009200 Sobic002G361800--Sobic009G009200 Sobic006G197100 Sobic006G197100 Sobic002G042200--Sobic006G197100 Sobic004G139300 Sobic004G139300 Sobic002G042200--Sobic004G139300 Sobic002G261500 Sobic002G261500 Sobic002G042200--Sobic002G261500 Sobic005G065900 Sobic005G065900 Sobic002G042200--Sobic005G065900 Sobic010G148800 Sobic010G148800 Sobic002G042200--Sobic010G148800 Sobic004G202400 Sobic004G202400 Sobic002G042200--Sobic004G202400 Sobic003G157600 Sobic003G157600 Sobic002G042200--Sobic003G157600 Sobic006G251400 Sobic006G251400 Sobic002G042200--Sobic006G251400 Sobic004G209400 Sobic004G209400 Sobic002G042200--Sobic004G209400 Sobic001G183700--Sobic010G070300 Sobic001G183700--Sobic001G360400 Sobic001G183700--Sobic004G009500 Sobic001G183700--Sobic003G015300 Sobic001G183700--Sobic010G113100 Sobic001G375200 Sobic001G375200 Sobic001G183700--Sobic001G375200 Sobic003G152200 Sobic003G152200 Sobic001G183700--Sobic003G152200 Sobic001G183700--Sobic006G251400 Sobic002G385500 Sobic002G385500 Sobic001G183700--Sobic002G385500 Sobic003G183600 Sobic003G183600 Sobic006G086700--Sobic003G183600 Sobic006G086700--Sobic004G316500 Sobic006G086700--Sobic001G183700 Sobic006G086700--Sobic002G101400 Sobic006G086700--Sobic010G113100 Sobic005G063400 Sobic005G063400 Sobic006G086700--Sobic005G063400 Sobic003G384700 Sobic003G384700 Sobic006G086700--Sobic003G384700 Sobic010G185200 Sobic010G185200 Sobic006G086700--Sobic010G185200 Sobic006G086700--Sobic008G164450 Sobic001G360400--Sobic010G206800 Sobic001G360400--Sobic007G047500 Sobic001G360400--Sobic007G021900 Sobic005G037200 Sobic005G037200 Sobic001G360400--Sobic005G037200 Sobic008G148200 Sobic008G148200 Sobic001G360400--Sobic008G148200 Sobic001G360400--Sobic007G030501 Sobic001G147900 Sobic001G147900 Sobic001G360400--Sobic001G147900 Sobic002G261300 Sobic002G261300 Sobic001G360400--Sobic002G261300 Sobic001G360400--Sobic001G183700
Octagon: transcription factors


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