Gene annotation
Transcriptome id Sobic.004G344200.1,Sobic.004G344200.2,Sobic.004G344200.3
Synonym CLASP, Sb04g037140, ATCLASP
Functional annotation HEAT repeat family protein, putative, expressed
UniProt A0A1Z5RQJ8 , C5XVV1 , A0A1Z5RQJ4
Pfam PF12348
Panther DB PTHR21567 PTHR21567:SF36
NCBI CDD -
KEGG Orthology K16578; CLIP-associating protein 1/2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G20190 : CLIP-associated protein
RAP-DB (Rice) LOC_Os02g57120.1 : HEAT repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a022600
Brachypodium KQK01342 , PNT69432
Barley -
Wheat TraesCS6D02G372700 , TraesCS6D02G372700 , TraesCS6B02G427900 , TraesCS6A02G388900 , TraesCS6A02G388900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G003200 peroxidase precursor, putative, expressed K00430: peroxidase
2 Sobic.009G153800 protein kinase, putative, expressed K08857: NIMA (never in mitosis gene a)-related kinase 1/4/5
3 Sobic.003G352800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Protein L-ascorbate oxidase precursor (Os)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
4 Sobic.008G059800 expressed protein -
5 Sobic.008G163000 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR57 - Auxin-responsive SAUR gene family member, expressed -
6 Sobic.008G112200 Expressed in middle stem(PubMedID : 28649278)@myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
7 Sobic.002G164600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@microtubule-associated protein, putative, expressed -
8 Sobic.006G001000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@cytochrome P450 93A2, putative, expressed -
9 Sobic.009G241600 Expressed in older stem(PubMedID : 28649278)@zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K18753: butyrate response factor
10 Sobic.001G405000 MRH1, putative, expressed -
11 Sobic.009G162800 laccase precursor protein, putative, expressed K05909: laccase
12 Sobic.007G027200 anthocyanidin 3-O-glucosyltransferase, putative, expressed -
13 Sobic.010G196400 expressed protein -
14 Sobic.001G275600 peptide transporter PTR2, putative, expressed -
15 Sobic.005G087200 plant-specific domain TIGR01627 family protein, expressed K18801: glucuronoxylan 4-O-methyltransferase
16 Sobic.001G534532 - -
17 Sobic.009G226900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin-responsive protein, putative, expressed -
18 Sobic.010G199700 STRUBBELIG-RECEPTOR FAMILY 7 precursor, putative, expressed -
19 Sobic.006G166800 plastocyanin-like domain containing protein, putative, expressed -
20 Sobic.009G162500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K05280: flavonoid 3'-monooxygenase


Gene co-expression network
sample Sobic004G344200 Sobic004G344200 Sobic002G003200 Sobic002G003200 Sobic004G344200--Sobic002G003200 Sobic009G153800 Sobic009G153800 Sobic004G344200--Sobic009G153800 Sobic003G352800 Sobic003G352800 Sobic004G344200--Sobic003G352800 Sobic008G059800 Sobic008G059800 Sobic004G344200--Sobic008G059800 Sobic008G163000 Sobic008G163000 Sobic004G344200--Sobic008G163000 Sobic008G112200 Sobic008G112200 Sobic004G344200--Sobic008G112200 Sobic002G164600 Sobic002G164600 Sobic004G344200--Sobic002G164600 Sobic006G001000 Sobic006G001000 Sobic004G344200--Sobic006G001000 Sobic009G241600 Sobic009G241600 Sobic004G344200--Sobic009G241600 Sobic002G003200--Sobic003G352800 Sobic002G003200--Sobic009G153800 Sobic002G003200--Sobic004G344200 Sobic001G405000 Sobic001G405000 Sobic002G003200--Sobic001G405000 Sobic002G003200--Sobic008G059800 Sobic002G003200--Sobic006G001000 Sobic009G162500 Sobic009G162500 Sobic002G003200--Sobic009G162500 Sobic001G066900 Sobic001G066900 Sobic002G003200--Sobic001G066900 Sobic002G003200--Sobic008G163000 Sobic009G153800--Sobic008G059800 Sobic009G153800--Sobic002G003200 Sobic009G153800--Sobic004G344200 Sobic010G199700 Sobic010G199700 Sobic009G153800--Sobic010G199700 Sobic009G153800--Sobic003G352800 Sobic009G153800--Sobic008G112200 Sobic009G153800--Sobic002G164600 Sobic009G153800--Sobic009G241600 Sobic003G236701 Sobic003G236701 Sobic009G153800--Sobic003G236701 Sobic006G166800 Sobic006G166800 Sobic003G352800--Sobic006G166800 Sobic009G162800 Sobic009G162800 Sobic003G352800--Sobic009G162800 Sobic007G027200 Sobic007G027200 Sobic003G352800--Sobic007G027200 Sobic003G352800--Sobic002G003200 Sobic003G352800--Sobic009G241600 Sobic003G352800--Sobic008G059800 Sobic003G352800--Sobic009G153800 Sobic003G427900 Sobic003G427900 Sobic003G352800--Sobic003G427900 Sobic010G196400 Sobic010G196400 Sobic003G352800--Sobic010G196400 Sobic008G059800--Sobic002G164600 Sobic008G059800--Sobic003G236701 Sobic008G059800--Sobic009G241600 Sobic008G059800--Sobic009G153800 Sobic008G059800--Sobic010G199700 Sobic007G223600 Sobic007G223600 Sobic008G059800--Sobic007G223600 Sobic008G059800--Sobic008G112200 Sobic009G226900 Sobic009G226900 Sobic008G059800--Sobic009G226900 Sobic006G066500 Sobic006G066500 Sobic008G059800--Sobic006G066500 Sobic001G275600 Sobic001G275600 Sobic008G163000--Sobic001G275600 Sobic008G163000--Sobic006G001000 Sobic009G119400 Sobic009G119400 Sobic008G163000--Sobic009G119400 Sobic008G163000--Sobic004G344200 Sobic008G164900 Sobic008G164900 Sobic008G163000--Sobic008G164900 Sobic009G151000 Sobic009G151000 Sobic008G163000--Sobic009G151000 Sobic008G163000--Sobic010G196400 Sobic008G163000--Sobic002G003200 Sobic003G108000 Sobic003G108000 Sobic008G163000--Sobic003G108000 Sobic008G112200--Sobic010G199700 Sobic008G112200--Sobic009G241600 Sobic008G112200--Sobic008G059800 Sobic008G112200--Sobic001G066900 Sobic008G112200--Sobic003G236701 Sobic008G112200--Sobic009G153800 Sobic001G468300 Sobic001G468300 Sobic008G112200--Sobic001G468300 Sobic008G112200--Sobic002G164600 Sobic008G112200--Sobic009G226900 Sobic002G164600--Sobic003G236701 Sobic002G164600--Sobic007G223600 Sobic002G164600--Sobic008G059800 Sobic006G226200 Sobic006G226200 Sobic002G164600--Sobic006G226200 Sobic003G112200 Sobic003G112200 Sobic002G164600--Sobic003G112200 Sobic002G164600--Sobic006G066500 Sobic006G209300 Sobic006G209300 Sobic002G164600--Sobic006G209300 Sobic002G164600--Sobic009G241600 Sobic005G229100 Sobic005G229100 Sobic002G164600--Sobic005G229100 Sobic006G001000--Sobic001G275600 Sobic006G001000--Sobic008G163000 Sobic006G001000--Sobic009G151000 Sobic006G001000--Sobic002G003200 Sobic006G001000--Sobic003G352800 Sobic006G001000--Sobic003G108000 Sobic009G215600 Sobic009G215600 Sobic006G001000--Sobic009G215600 Sobic006G001000--Sobic004G344200 Sobic006G001000--Sobic003G427900 Sobic009G241600--Sobic003G236701 Sobic009G241600--Sobic007G027200 Sobic009G241600--Sobic006G066500 Sobic009G241600--Sobic008G059800 Sobic009G241600--Sobic002G164600 Sobic009G241600--Sobic010G199700 Sobic009G241600--Sobic008G112200 Sobic009G241600--Sobic003G112200 Sobic009G241600--Sobic006G166800
Octagon: transcription factors


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