Gene annotation
Transcriptome id Sobic.005G067300.1,Sobic.005G067300.2
Synonym Sb05g005710
Functional annotation 1-aminocyclopropane-1-carboxylate oxidase, putative, expressed
UniProt C5Y6L4 , A0A1Z5RI65
Pfam PF03171 PF14226 PF14226 PF03171
Panther DB PTHR10209 PTHR10209:SF141
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology K05933; aminocyclopropanecarboxylate oxidase
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT1G77330 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
RAP-DB (Rice) LOC_Os11g08380.1 : 1-aminocyclopropane-1-carboxylate oxidase, putative, expressed
MaizeGDB (Corn) Zm00025a033063 , Zm00025a055410 , Zm00025a055408 , Zm00025a055407 , Zm00025a055405 , Zm00025a034057 , Zm00025a034056 , Zm00025a012763
Brachypodium KQJ89108 , KQK07503 , KQK07502
Barley HORVU1Hr1G020410.2 , HORVU1Hr1G020410.3 , HORVU1Hr1G020410.1 , HORVU1Hr1G020450.2 , HORVU1Hr1G020450.1 , HORVU1Hr1G020430.1 , HORVU4Hr1G017660.2 , HORVU4Hr1G017660.3 , HORVU4Hr1G017660.1
Wheat TraesCS4D02G095500 , TraesCSU02G067700 , TraesCS4A02G221300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G079100 dirigent, putative -
2 Sobic.010G168400 ferroportin1 domain containing protein, expressed K14685: SLC40A1, solute carrier family 40 (iron-regulated transporter), member 1
3 Sobic.002G195600 Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
4 Sobic.006G196400 U-box, putative, expressed -
5 Sobic.009G032900 peroxidase precursor, putative, expressed K00430: peroxidase
6 Sobic.005G080600 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
7 Sobic.002G118900 auxin-induced protein 5NG4, putative, expressed -
8 Sobic.004G351200 -(PubMedID : 24879770)@Up-regulated by osmotic stress.(PubMedID : 24879770)@aquaporin protein, putative, expressed K09872: aquaporin PIP
9 Sobic.003G269900 OsSub12 - Putative Subtilisin homologue, expressed -
10 Sobic.001G189200 peroxidase precursor, putative, expressed K00430: peroxidase
11 Sobic.002G068000 expressed protein -
12 Sobic.002G115600 membrane protein, putative, expressed -
13 Sobic.010G158400 zinc finger, C3HC4 type domain containing protein, expressed -
14 Sobic.001G182200 GDSL-like lipase/acylhydrolase, putative, expressed -
15 Sobic.005G216500 plant protein of unknown function domain containing protein, expressed -
16 Sobic.007G220400 receptor-like protein kinase 2 precursor, putative, expressed -
17 Sobic.001G209300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@secretory protein, putative, expressed -
18 Sobic.002G337100 nucleoside transporter, putative, expressed K15014: SLC29A1_2_3, solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3
19 Sobic.003G240400 leaf senescence related protein, putative, expressed -
20 Sobic.003G185300 dynein light chain type 1 domain containing protein, expressed K10418: dynein light chain LC8-type


Gene co-expression network
sample Sobic005G067300 Sobic005G067300 Sobic005G079100 Sobic005G079100 Sobic005G067300--Sobic005G079100 Sobic010G168400 Sobic010G168400 Sobic005G067300--Sobic010G168400 Sobic002G195600 Sobic002G195600 Sobic005G067300--Sobic002G195600 Sobic006G196400 Sobic006G196400 Sobic005G067300--Sobic006G196400 Sobic009G032900 Sobic009G032900 Sobic005G067300--Sobic009G032900 Sobic005G080600 Sobic005G080600 Sobic005G067300--Sobic005G080600 Sobic002G118900 Sobic002G118900 Sobic005G067300--Sobic002G118900 Sobic004G351200 Sobic004G351200 Sobic005G067300--Sobic004G351200 Sobic003G269900 Sobic003G269900 Sobic005G067300--Sobic003G269900 Sobic005G216500 Sobic005G216500 Sobic005G079100--Sobic005G216500 Sobic005G134200 Sobic005G134200 Sobic005G079100--Sobic005G134200 Sobic007G220400 Sobic007G220400 Sobic005G079100--Sobic007G220400 Sobic004G119900 Sobic004G119900 Sobic005G079100--Sobic004G119900 Sobic010G269000 Sobic010G269000 Sobic005G079100--Sobic010G269000 Sobic010G241900 Sobic010G241900 Sobic005G079100--Sobic010G241900 Sobic005G079100--Sobic009G032900 Sobic003G046700 Sobic003G046700 Sobic005G079100--Sobic003G046700 Sobic002G334000 Sobic002G334000 Sobic005G079100--Sobic002G334000 Sobic001G209300 Sobic001G209300 Sobic010G168400--Sobic001G209300 Sobic004G119800 Sobic004G119800 Sobic010G168400--Sobic004G119800 Sobic010G168400--Sobic002G195600 Sobic001G182200 Sobic001G182200 Sobic010G168400--Sobic001G182200 Sobic010G168400--Sobic005G080600 Sobic010G241800 Sobic010G241800 Sobic010G168400--Sobic010G241800 Sobic010G168400--Sobic005G067300 Sobic004G083500 Sobic004G083500 Sobic010G168400--Sobic004G083500 Sobic010G168400--Sobic006G196400 Sobic007G073000 Sobic007G073000 Sobic002G195600--Sobic007G073000 Sobic002G195600--Sobic006G196400 Sobic008G138900 Sobic008G138900 Sobic002G195600--Sobic008G138900 Sobic003G215300 Sobic003G215300 Sobic002G195600--Sobic003G215300 Sobic003G240400 Sobic003G240400 Sobic002G195600--Sobic003G240400 Sobic004G014600 Sobic004G014600 Sobic002G195600--Sobic004G014600 Sobic007G090600 Sobic007G090600 Sobic002G195600--Sobic007G090600 Sobic006G092700 Sobic006G092700 Sobic002G195600--Sobic006G092700 Sobic006G135300 Sobic006G135300 Sobic002G195600--Sobic006G135300 Sobic006G031100 Sobic006G031100 Sobic006G196400--Sobic006G031100 Sobic006G196400--Sobic007G090600 Sobic006G196400--Sobic005G080600 Sobic006G196400--Sobic003G240400 Sobic006G196400--Sobic003G215300 Sobic002G115600 Sobic002G115600 Sobic006G196400--Sobic002G115600 Sobic005G175900 Sobic005G175900 Sobic006G196400--Sobic005G175900 Sobic010G082000 Sobic010G082000 Sobic006G196400--Sobic010G082000 Sobic006G205700 Sobic006G205700 Sobic006G196400--Sobic006G205700 Sobic002G068000 Sobic002G068000 Sobic009G032900--Sobic002G068000 Sobic009G032900--Sobic004G351200 Sobic005G216700 Sobic005G216700 Sobic009G032900--Sobic005G216700 Sobic010G158400 Sobic010G158400 Sobic009G032900--Sobic010G158400 Sobic009G032900--Sobic002G334000 Sobic010G139100 Sobic010G139100 Sobic009G032900--Sobic010G139100 Sobic007G206800 Sobic007G206800 Sobic009G032900--Sobic007G206800 Sobic009G032900--Sobic003G046700 Sobic009G032900--Sobic003G269900 Sobic005G080600--Sobic007G206800 Sobic005G080600--Sobic006G196400 Sobic005G080600--Sobic007G220400 Sobic002G391400 Sobic002G391400 Sobic005G080600--Sobic002G391400 Sobic009G259800 Sobic009G259800 Sobic005G080600--Sobic009G259800 Sobic005G080600--Sobic004G119800 Sobic005G080600--Sobic002G334000 Sobic005G080600--Sobic002G068000 Sobic005G080600--Sobic010G241900 Sobic002G118900--Sobic003G269900 Sobic002G118900--Sobic002G115600 Sobic001G263300 Sobic001G263300 Sobic002G118900--Sobic001G263300 Sobic002G118900--Sobic005G216500 Sobic002G003400 Sobic002G003400 Sobic002G118900--Sobic002G003400 Sobic002G118900--Sobic006G196400 Sobic002G118900--Sobic009G032900 Sobic002G118900--Sobic003G046700 Sobic002G118900--Sobic005G080600 Sobic004G351200--Sobic005G216700 Sobic004G351200--Sobic009G032900 Sobic004G351200--Sobic010G139100 Sobic004G351200--Sobic002G334000 Sobic004G351200--Sobic002G068000 Sobic004G351200--Sobic010G158400 Sobic004G351200--Sobic007G206800 Sobic002G392100 Sobic002G392100 Sobic004G351200--Sobic002G392100 Sobic006G150100 Sobic006G150100 Sobic004G351200--Sobic006G150100 Sobic003G269900--Sobic002G118900 Sobic010G115000 Sobic010G115000 Sobic003G269900--Sobic010G115000 Sobic003G269900--Sobic010G139100 Sobic003G269900--Sobic009G032900 Sobic003G269900--Sobic005G216500 Sobic003G269900--Sobic002G115600 Sobic003G269900--Sobic010G158400 Sobic003G269900--Sobic005G216700 Sobic003G185300 Sobic003G185300 Sobic003G269900--Sobic003G185300
Octagon: transcription factors


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