Gene annotation
Transcriptome id Sobic.005G169000.1
Synonym KCS4
Functional annotation 3-ketoacyl-CoA synthase, putative, expressed
UniProt A0A1B6PT07
Pfam PF08392
Panther DB PTHR31561
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups GO:0016020membrane GO:0006633fatty acid biosynthetic process


Orthologs (automatic annotation)
TAIR AT1G19440 : 3-ketoacyl-CoA synthase 4
RAP-DB (Rice) LOC_Os11g37900.1 : 3-ketoacyl-CoA synthase, putative, expressed
MaizeGDB (Corn) Zm00025a029505
Brachypodium KQJ96727 , KQJ88016
Barley -
Wheat TraesCS6B02G098300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G426100 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
2 Sobic.005G164300 chalcone synthase, putative, expressed -
3 Sobic.005G045500 carrier, putative, expressed -
4 Sobic.006G206900 60S ribosomal protein L7, putative, expressed -
5 Sobic.010G102300 expressed protein -
6 Sobic.004G180301 - -
7 Sobic.010G035700 expressed protein -
8 Sobic.007G067300 Cupin domain containing protein, expressed -
9 Sobic.007G066932 - -
10 Sobic.002G024650 - -
11 Sobic.001G319700 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
12 Sobic.010G006100 expressed protein -
13 Sobic.007G135201 - -
14 Sobic.007G015800 - -
15 Sobic.002G057900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@thioredoxin, putative, expressed K03671: thioredoxin 1
16 Sobic.004G304300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K15095: (+)-neomenthol dehydrogenase
17 Sobic.002G195400 "Cinnamyl alcohol dehydrogenase, expressed in lignifying tissues"(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@Protein mannitol dehydrogenase (Os)(PubMedID : 27208977)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
18 Sobic.006G275300 VQ domain containing protein, putative, expressed -
19 Sobic.008G123801 - -
20 Sobic.001G121850 - -


Gene co-expression network
sample Sobic005G169000 Sobic005G169000 Sobic003G426100 Sobic003G426100 Sobic005G169000--Sobic003G426100 Sobic005G164300 Sobic005G164300 Sobic005G169000--Sobic005G164300 Sobic005G045500 Sobic005G045500 Sobic005G169000--Sobic005G045500 Sobic006G206900 Sobic006G206900 Sobic005G169000--Sobic006G206900 Sobic010G102300 Sobic010G102300 Sobic005G169000--Sobic010G102300 Sobic004G180301 Sobic004G180301 Sobic005G169000--Sobic004G180301 Sobic010G035700 Sobic010G035700 Sobic005G169000--Sobic010G035700 Sobic007G067300 Sobic007G067300 Sobic005G169000--Sobic007G067300 Sobic007G066932 Sobic007G066932 Sobic005G169000--Sobic007G066932 Sobic003G426100--Sobic007G066932 Sobic002G195400 Sobic002G195400 Sobic003G426100--Sobic002G195400 Sobic003G426100--Sobic010G035700 Sobic003G426100--Sobic010G102300 Sobic007G067350 Sobic007G067350 Sobic003G426100--Sobic007G067350 Sobic004G304300 Sobic004G304300 Sobic003G426100--Sobic004G304300 Sobic001G319700 Sobic001G319700 Sobic003G426100--Sobic001G319700 Sobic007G135201 Sobic007G135201 Sobic003G426100--Sobic007G135201 Sobic007G067600 Sobic007G067600 Sobic003G426100--Sobic007G067600 Sobic005G164300--Sobic005G045500 Sobic005G164300--Sobic007G067300 Sobic005G164300--Sobic006G206900 Sobic005G164300--Sobic005G169000 Sobic005G169100 Sobic005G169100 Sobic005G164300--Sobic005G169100 Sobic001G342700 Sobic001G342700 Sobic005G164300--Sobic001G342700 Sobic005G156600 Sobic005G156600 Sobic005G164300--Sobic005G156600 Sobic002G024650 Sobic002G024650 Sobic005G164300--Sobic002G024650 Sobic007G015800 Sobic007G015800 Sobic005G164300--Sobic007G015800 Sobic001G121850 Sobic001G121850 Sobic005G045500--Sobic001G121850 Sobic005G045500--Sobic002G024650 Sobic006G206900--Sobic005G045500 Sobic006G206900--Sobic002G024650 Sobic006G206900--Sobic001G121850 Sobic010G102300--Sobic001G319700 Sobic010G102300--Sobic002G195400 Sobic010G102300--Sobic010G035700 Sobic010G102300--Sobic007G066932 Sobic010G102300--Sobic003G426100 Sobic010G102300--Sobic007G067600 Sobic010G102300--Sobic007G067350 Sobic010G102300--Sobic004G304300 Sobic001G231600 Sobic001G231600 Sobic010G102300--Sobic001G231600 Sobic004G180301--Sobic010G035700 Sobic004G180301--Sobic003G426100 Sobic004G180301--Sobic004G304300 Sobic004G180301--Sobic007G015800 Sobic004G180301--Sobic010G102300 Sobic004G180301--Sobic001G319700 Sobic004G180301--Sobic007G066932 Sobic010G102200 Sobic010G102200 Sobic004G180301--Sobic010G102200 Sobic004G180301--Sobic002G195400 Sobic010G035700--Sobic003G426100 Sobic010G035700--Sobic010G102300 Sobic010G035700--Sobic001G319700 Sobic010G035700--Sobic007G066932 Sobic010G035700--Sobic007G067350 Sobic010G035700--Sobic002G195400 Sobic010G035700--Sobic007G135201 Sobic010G035700--Sobic004G304300 Sobic010G035700--Sobic004G180301 Sobic007G067300--Sobic001G342700 Sobic007G067300--Sobic005G169100 Sobic007G067300--Sobic006G206900 Sobic008G068166 Sobic008G068166 Sobic007G067300--Sobic008G068166 Sobic007G067300--Sobic005G045500 Sobic007G067300--Sobic010G102300 Sobic007G067300--Sobic007G015800 Sobic007G066908 Sobic007G066908 Sobic007G067300--Sobic007G066908 Sobic009G009400 Sobic009G009400 Sobic007G067300--Sobic009G009400 Sobic007G066932--Sobic007G067350 Sobic007G066932--Sobic003G426100 Sobic007G066932--Sobic002G195400 Sobic007G066932--Sobic010G102300 Sobic007G066932--Sobic007G067600 Sobic007G066932--Sobic004G304300 Sobic007G066932--Sobic001G319700 Sobic006G084600 Sobic006G084600 Sobic007G066932--Sobic006G084600 Sobic007G066932--Sobic007G135201
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.