Gene annotation
Transcriptome id Sobic.006G002100.1
Synonym Sb06g000380
Functional annotation phosphoglycerate mutase, putative, expressed
UniProt C5YB89
Pfam PF00300
Panther DB PTHR23029 PTHR23029:SF40
NCBI CDD KOG4754; Predicted phosphoglycerate mutase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G64460 : Phosphoglycerate mutase family protein
RAP-DB (Rice) LOC_Os04g01230.1 : phosphoglycerate mutase, putative, expressed
MaizeGDB (Corn) Zm00025a055524
Brachypodium -
Barley -
Wheat TraesCS2A02G042100 , TraesCS2A02G042100
Populus -


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cDNA sequences
Sobic.006G002100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G183100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.007G016100 - -
3 Sobic.006G036500 peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed -
4 Sobic.006G107200 molybdopterin biosynthesis protein CNX3, putative, expressed K03639: moaA, GTP 3',8-cyclase
5 Sobic.006G038800 purple acid phosphatase 27("PubMedID : 26759170,PubMedID : 24597475")@nucleotide pyrophosphatase/phosphodiesterase, putative, expressed -
6 Sobic.004G037000 tRNA synthetases class II domain containing protein, expressed K01876: aspartyl-tRNA synthetase
7 Sobic.001G248500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Glutathione reductases(PubMedID : 23783412)@glutathione reductase, putative, expressed K00383: GSR, glutathione reductase (NADPH)
8 Sobic.002G156900 expressed protein -
9 Sobic.001G348700 - -
10 Sobic.008G140300 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed -
11 Sobic.002G182500 nucleic acid binding protein, putative, expressed -
12 Sobic.010G204100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450 71D7, putative, expressed -
13 Sobic.001G320400 lysM domain containing protein, putative, expressed -
14 Sobic.004G221500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein K13113: UBL5, ubiquitin-like protein 5
15 Sobic.010G084700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
16 Sobic.001G487300 expressed protein -
17 Sobic.004G128400 O-methyltransferase, putative, expressed -
18 Sobic.010G110266 - -
19 Sobic.004G071650 - -
20 Sobic.008G118800 expressed protein -


Gene co-expression network
sample Sobic006G002100 Sobic006G002100 Sobic002G183100 Sobic002G183100 Sobic006G002100--Sobic002G183100 Sobic007G016100 Sobic007G016100 Sobic006G002100--Sobic007G016100 Sobic006G036500 Sobic006G036500 Sobic006G002100--Sobic006G036500 Sobic006G107200 Sobic006G107200 Sobic006G002100--Sobic006G107200 Sobic006G038800 Sobic006G038800 Sobic006G002100--Sobic006G038800 Sobic004G037000 Sobic004G037000 Sobic006G002100--Sobic004G037000 Sobic001G248500 Sobic001G248500 Sobic006G002100--Sobic001G248500 Sobic002G156900 Sobic002G156900 Sobic006G002100--Sobic002G156900 Sobic001G348700 Sobic001G348700 Sobic006G002100--Sobic001G348700 Sobic008G140300 Sobic008G140300 Sobic002G183100--Sobic008G140300 Sobic002G183100--Sobic001G348700 Sobic004G221500 Sobic004G221500 Sobic002G183100--Sobic004G221500 Sobic007G067400 Sobic007G067400 Sobic002G183100--Sobic007G067400 Sobic010G084700 Sobic010G084700 Sobic002G183100--Sobic010G084700 Sobic001G487300 Sobic001G487300 Sobic002G183100--Sobic001G487300 Sobic002G183100--Sobic004G037000 Sobic002G184200 Sobic002G184200 Sobic002G183100--Sobic002G184200 Sobic002G182500 Sobic002G182500 Sobic002G183100--Sobic002G182500 Sobic007G016100--Sobic006G002100 Sobic007G016100--Sobic010G084700 Sobic007G016100--Sobic004G221500 Sobic007G016100--Sobic001G487300 Sobic001G513300 Sobic001G513300 Sobic007G016100--Sobic001G513300 Sobic007G016100--Sobic004G037000 Sobic007G016100--Sobic002G183100 Sobic004G071650 Sobic004G071650 Sobic007G016100--Sobic004G071650 Sobic007G016100--Sobic001G348700 Sobic006G036500--Sobic006G038800 Sobic006G036500--Sobic002G156900 Sobic006G036500--Sobic002G182500 Sobic004G189301 Sobic004G189301 Sobic006G036500--Sobic004G189301 Sobic006G036500--Sobic002G183100 Sobic006G036500--Sobic006G002100 Sobic010G110266 Sobic010G110266 Sobic006G036500--Sobic010G110266 Sobic002G018500 Sobic002G018500 Sobic006G036500--Sobic002G018500 Sobic005G089500 Sobic005G089500 Sobic006G036500--Sobic005G089500 Sobic010G117900 Sobic010G117900 Sobic006G107200--Sobic010G117900 Sobic009G068200 Sobic009G068200 Sobic006G107200--Sobic009G068200 Sobic006G107200--Sobic004G221500 Sobic001G231600 Sobic001G231600 Sobic006G107200--Sobic001G231600 Sobic006G173900 Sobic006G173900 Sobic006G107200--Sobic006G173900 Sobic006G107200--Sobic002G183100 Sobic006G084600 Sobic006G084600 Sobic006G107200--Sobic006G084600 Sobic006G107200--Sobic010G084700 Sobic006G107200--Sobic001G348700 Sobic006G038800--Sobic006G036500 Sobic006G038800--Sobic005G089500 Sobic006G038800--Sobic002G183100 Sobic006G277550 Sobic006G277550 Sobic006G038800--Sobic006G277550 Sobic006G038800--Sobic002G018500 Sobic006G038800--Sobic002G156900 Sobic006G038800--Sobic002G182500 Sobic006G038800--Sobic006G002100 Sobic006G038800--Sobic001G248500 Sobic007G155200 Sobic007G155200 Sobic004G037000--Sobic007G155200 Sobic002G361100 Sobic002G361100 Sobic004G037000--Sobic002G361100 Sobic010G084600 Sobic010G084600 Sobic004G037000--Sobic010G084600 Sobic004G037000--Sobic002G184200 Sobic004G037000--Sobic010G084700 Sobic009G224100 Sobic009G224100 Sobic004G037000--Sobic009G224100 Sobic004G037000--Sobic004G221500 Sobic006G207000 Sobic006G207000 Sobic004G037000--Sobic006G207000 Sobic010G196600 Sobic010G196600 Sobic004G037000--Sobic010G196600 Sobic001G331301 Sobic001G331301 Sobic001G248500--Sobic001G331301 Sobic001G248500--Sobic006G038800 Sobic001G248500--Sobic006G002100 Sobic004G128400 Sobic004G128400 Sobic001G248500--Sobic004G128400 Sobic003G227300 Sobic003G227300 Sobic001G248500--Sobic003G227300 Sobic010G204100 Sobic010G204100 Sobic001G248500--Sobic010G204100 Sobic005G213200 Sobic005G213200 Sobic001G248500--Sobic005G213200 Sobic001G320400 Sobic001G320400 Sobic001G248500--Sobic001G320400 Sobic001G335600 Sobic001G335600 Sobic001G248500--Sobic001G335600 Sobic002G156900--Sobic006G036500 Sobic008G092932 Sobic008G092932 Sobic002G156900--Sobic008G092932 Sobic002G156900--Sobic006G038800 Sobic002G156900--Sobic010G110266 Sobic008G121400 Sobic008G121400 Sobic002G156900--Sobic008G121400 Sobic002G156900--Sobic006G002100 Sobic007G101900 Sobic007G101900 Sobic002G156900--Sobic007G101900 Sobic002G156900--Sobic002G183100 Sobic002G156900--Sobic005G089500 Sobic003G252800 Sobic003G252800 Sobic001G348700--Sobic003G252800 Sobic001G348700--Sobic004G221500 Sobic001G348700--Sobic010G084700 Sobic001G348700--Sobic006G084600 Sobic001G348700--Sobic010G117900 Sobic005G206601 Sobic005G206601 Sobic001G348700--Sobic005G206601 Sobic004G216600 Sobic004G216600 Sobic001G348700--Sobic004G216600 Sobic006G099900 Sobic006G099900 Sobic001G348700--Sobic006G099900 Sobic001G317200 Sobic001G317200 Sobic001G348700--Sobic001G317200
Octagon: transcription factors


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