Gene annotation
Transcriptome id Sobic.006G177700.1
Synonym MSL5, Sb06g025240
Functional annotation uncharacterized mscS family protein, putative, expressed
UniProt A0A1B6PMI9
Pfam PF00924
Panther DB PTHR31618 PTHR31618:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT3G14810 : mechanosensitive channel of small conductance-like 5
RAP-DB (Rice) LOC_Os04g47320.1 : uncharacterized mscS family protein, putative, expressed
MaizeGDB (Corn) Zm00025a033992 , Zm00025a010221 , Zm00025a021457 , Zm00025a056822
Brachypodium KQJ84035 , KQK00700 , PNT64806
Barley HORVU4Hr1G083980.9 , HORVU4Hr1G083980.6 , HORVU4Hr1G083980.7 , HORVU4Hr1G083980.4 , HORVU4Hr1G083980.5 , HORVU5Hr1G071860.1 , HORVU5Hr1G071860.3 , HORVU5Hr1G071860.5 , HORVU5Hr1G071860.4 , HORVU5Hr1G071860.6 , HORVU6Hr1G064470.7 , HORVU6Hr1G064470.6 , HORVU6Hr1G064470.5 , HORVU6Hr1G064470.4 , HORVU6Hr1G064470.2 , HORVU6Hr1G064470.1 , HORVU5Hr1G071860.2 , HORVU4Hr1G083980.14 , HORVU4Hr1G083980.15 , HORVU4Hr1G083980.10 , HORVU4Hr1G083980.11 , HORVU4Hr1G083980.12 , HORVU4Hr1G083980.13 , HORVU4Hr1G083980.19 , HORVU5Hr1G048820.5 , HORVU5Hr1G048820.4 , HORVU5Hr1G048820.7 , HORVU5Hr1G048820.6 , HORVU5Hr1G048820.3 , HORVU5Hr1G048820.2
Wheat TraesCS6A02G252600 , TraesCS6A02G252600 , TraesCS4D02G337000 , TraesCS5B02G256300 , TraesCS6D02G234100 , TraesCS4D02G336900 , TraesCS1D02G020800 , TraesCS2A02G407000 , TraesCS2D02G403900 , TraesCS6B02G272700 , TraesCS6B02G272700 , TraesCS4B02G341000 , TraesCS5D02G265400 , TraesCS5A02G256800 , TraesCS5A02G510300 , TraesCS5A02G510300 , TraesCS1A02G021200 , TraesCS2B02G424600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G076100 expressed protein -
2 Sobic.004G036400 Ca exchanger 2(PubMedID : 22196357)@sodium/calcium exchanger protein, putative, expressed K07300: chaA, Ca2+:H+ antiporter
3 Sobic.001G002400 OsSub55 - Putative Subtilisin homologue, expressed -
4 Sobic.008G059700 expressed protein -
5 Sobic.008G056700 - -
6 Sobic.003G175000 respiratory burst oxidase, putative, expressed -
7 Sobic.008G025400 ankyrin, putative, expressed -
8 Sobic.001G248700 - -
9 Sobic.001G170000 natural resistance-associated macrophage protein, putative, expressed K12347: SLC11A1, natural resistance-associated macrophage protein 1
10 Sobic.006G001100 ELMO/CED-12 family protein, putative, expressed -
11 Sobic.001G188100 expressed protein K15191: La-related protein 7
12 Sobic.004G049300 transporter family protein, putative, expressed -
13 Sobic.008G136601 - -
14 Sobic.005G204500 uncharacterized protein At4g06744 precursor, putative, expressed -
15 Sobic.003G400000 signal peptide peptidase-like 2B, putative, expressed -
16 Sobic.004G100900 tetratricopeptide repeat domain containing protein, expressed -
17 Sobic.001G212500 vacuolar protein sorting-associated protein 52, putative, expressed -
18 Sobic.002G126400 - -
19 Sobic.003G246500 3-5 exonuclease domain-containing protein, putative, expressed -
20 Sobic.002G295800 STRUBBELIG-RECEPTOR FAMILY 5 precursor, putative, expressed -


Gene co-expression network
sample Sobic006G177700 Sobic006G177700 Sobic008G076100 Sobic008G076100 Sobic006G177700--Sobic008G076100 Sobic004G036400 Sobic004G036400 Sobic006G177700--Sobic004G036400 Sobic001G002400 Sobic001G002400 Sobic006G177700--Sobic001G002400 Sobic008G059700 Sobic008G059700 Sobic006G177700--Sobic008G059700 Sobic008G056700 Sobic008G056700 Sobic006G177700--Sobic008G056700 Sobic003G175000 Sobic003G175000 Sobic006G177700--Sobic003G175000 Sobic008G025400 Sobic008G025400 Sobic006G177700--Sobic008G025400 Sobic001G248700 Sobic001G248700 Sobic006G177700--Sobic001G248700 Sobic001G170000 Sobic001G170000 Sobic006G177700--Sobic001G170000 Sobic008G076100--Sobic004G036400 Sobic008G076100--Sobic008G059700 Sobic001G188100 Sobic001G188100 Sobic008G076100--Sobic001G188100 Sobic008G053750 Sobic008G053750 Sobic008G076100--Sobic008G053750 Sobic005G204500 Sobic005G204500 Sobic008G076100--Sobic005G204500 Sobic008G043300 Sobic008G043300 Sobic008G076100--Sobic008G043300 Sobic008G076100--Sobic008G056700 Sobic009G075400 Sobic009G075400 Sobic008G076100--Sobic009G075400 Sobic008G119501 Sobic008G119501 Sobic008G076100--Sobic008G119501 Sobic004G036400--Sobic001G188100 Sobic001G409000 Sobic001G409000 Sobic004G036400--Sobic001G409000 Sobic007G001800 Sobic007G001800 Sobic004G036400--Sobic007G001800 Sobic003G445600 Sobic003G445600 Sobic004G036400--Sobic003G445600 Sobic009G016900 Sobic009G016900 Sobic004G036400--Sobic009G016900 Sobic004G036400--Sobic005G204500 Sobic004G217200 Sobic004G217200 Sobic004G036400--Sobic004G217200 Sobic006G164800 Sobic006G164800 Sobic004G036400--Sobic006G164800 Sobic001G269800 Sobic001G269800 Sobic004G036400--Sobic001G269800 Sobic009G062600 Sobic009G062600 Sobic001G002400--Sobic009G062600 Sobic004G062300 Sobic004G062300 Sobic001G002400--Sobic004G062300 Sobic001G002400--Sobic006G164800 Sobic002G066600 Sobic002G066600 Sobic001G002400--Sobic002G066600 Sobic004G049300 Sobic004G049300 Sobic001G002400--Sobic004G049300 Sobic007G167000 Sobic007G167000 Sobic001G002400--Sobic007G167000 Sobic001G002400--Sobic005G204500 Sobic005G006300 Sobic005G006300 Sobic001G002400--Sobic005G006300 Sobic002G414150 Sobic002G414150 Sobic001G002400--Sobic002G414150 Sobic001G092500 Sobic001G092500 Sobic008G059700--Sobic001G092500 Sobic008G043200 Sobic008G043200 Sobic008G059700--Sobic008G043200 Sobic010G016200 Sobic010G016200 Sobic008G059700--Sobic010G016200 Sobic010G207800 Sobic010G207800 Sobic008G059700--Sobic010G207800 Sobic007G215200 Sobic007G215200 Sobic008G059700--Sobic007G215200 Sobic005G191300 Sobic005G191300 Sobic008G059700--Sobic005G191300 Sobic003G004000 Sobic003G004000 Sobic008G059700--Sobic003G004000 Sobic010G040400 Sobic010G040400 Sobic008G059700--Sobic010G040400 Sobic001G167300 Sobic001G167300 Sobic008G059700--Sobic001G167300 Sobic009G102700 Sobic009G102700 Sobic008G056700--Sobic009G102700 Sobic008G056700--Sobic001G170000 Sobic007G057600 Sobic007G057600 Sobic008G056700--Sobic007G057600 Sobic004G070600 Sobic004G070600 Sobic008G056700--Sobic004G070600 Sobic004G166100 Sobic004G166100 Sobic008G056700--Sobic004G166100 Sobic001G528700 Sobic001G528700 Sobic008G056700--Sobic001G528700 Sobic008G027800 Sobic008G027800 Sobic008G056700--Sobic008G027800 Sobic004G024000 Sobic004G024000 Sobic008G056700--Sobic004G024000 Sobic002G283000 Sobic002G283000 Sobic008G056700--Sobic002G283000 Sobic002G254700 Sobic002G254700 Sobic003G175000--Sobic002G254700 Sobic003G175000--Sobic001G528700 Sobic003G175000--Sobic009G102700 Sobic007G222500 Sobic007G222500 Sobic003G175000--Sobic007G222500 Sobic003G175000--Sobic004G166100 Sobic001G252900 Sobic001G252900 Sobic003G175000--Sobic001G252900 Sobic001G348600 Sobic001G348600 Sobic003G175000--Sobic001G348600 Sobic010G252600 Sobic010G252600 Sobic003G175000--Sobic010G252600 Sobic003G175000--Sobic007G057600 Sobic003G093100 Sobic003G093100 Sobic008G025400--Sobic003G093100 Sobic001G294500 Sobic001G294500 Sobic008G025400--Sobic001G294500 Sobic003G111000 Sobic003G111000 Sobic008G025400--Sobic003G111000 Sobic003G151400 Sobic003G151400 Sobic008G025400--Sobic003G151400 Sobic003G246500 Sobic003G246500 Sobic008G025400--Sobic003G246500 Sobic003G164400 Sobic003G164400 Sobic008G025400--Sobic003G164400 Sobic004G177900 Sobic004G177900 Sobic008G025400--Sobic004G177900 Sobic002G088600 Sobic002G088600 Sobic008G025400--Sobic002G088600 Sobic007G131000 Sobic007G131000 Sobic008G025400--Sobic007G131000 Sobic001G094700 Sobic001G094700 Sobic001G248700--Sobic001G094700 Sobic009G089532 Sobic009G089532 Sobic001G170000--Sobic009G089532 Sobic004G137200 Sobic004G137200 Sobic001G170000--Sobic004G137200 Sobic001G539700 Sobic001G539700 Sobic001G170000--Sobic001G539700 Sobic009G096700 Sobic009G096700 Sobic001G170000--Sobic009G096700 Sobic008G028100 Sobic008G028100 Sobic001G170000--Sobic008G028100 Sobic009G098900 Sobic009G098900 Sobic001G170000--Sobic009G098900 Sobic001G170000--Sobic008G027800 Sobic002G002600 Sobic002G002600 Sobic001G170000--Sobic002G002600 Sobic001G170000--Sobic002G283000
Octagon: transcription factors


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