Gene annotation
Transcriptome id Sobic.006G182000.2,Sobic.006G182000.1
Synonym LHW, Sb06g025650
Functional annotation helix-loop-helix DNA-binding protein, putative, expressed
UniProt A0A125QUJ6 , A0A1Z5REJ3 , C5YE26
Pfam PF14215
Panther DB PTHR13902 PTHR13902:SF5
NCBI CDD KOG1319; bHLHZip transcription factor BIGMAX
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G27230 : transcription factor-related
RAP-DB (Rice) LOC_Os02g45170.1 : helix-loop-helix DNA-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a056782
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G226600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@wax synthase, putative, expressed -
2 Sobic.002G087800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1-aminocyclopropane-1-carboxylate oxidase 2, putative, expressed -
3 Sobic.004G321800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@saccharopine dehydrogenase, putative, expressed K14157: alpha-aminoadipic semialdehyde synthase
4 Sobic.003G087200 nuclease PA3, putative, expressed -
5 Sobic.006G181300 Polyphenol oxidas(PubMedID : 28818380)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@polyphenol oxidase, putative, expressed K00422: polyphenol oxidase
6 Sobic.009G057300 acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
7 Sobic.006G100332 - -
8 Sobic.001G325200 Expressed in drought and oxidative stress(PubMedID : 29862293)@aldehyde oxidase, putative, expressed K00106: xanthine dehydrogenase/oxidase
9 Sobic.001G150600 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K13606: NOL, chlorophyll(ide) b reductase
10 Sobic.001G305800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@U-box domain containing protein, expressed -
11 Sobic.009G207600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@dnaJ domain containing protein, expressed -
12 Sobic.006G030700 receptor kinase, putative, expressed -
13 Sobic.003G148800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K09699: DBT, 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase)
14 Sobic.001G316400 heavy metal-associated domain containing protein, expressed -
15 Sobic.001G474500 mitochondrial carrier protein, putative, expressed -
16 Sobic.003G184900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@esterase, putative, expressed -
17 Sobic.008G079300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
18 Sobic.006G091700 12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
19 Sobic.002G324000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@isocitrate lyase, putative, expressed K01637: E4.1.3.1, isocitrate lyase
20 Sobic.005G169400 WIP5 - Wound-induced protein precursor, expressed -


Gene co-expression network
sample Sobic006G182000 Sobic006G182000 Sobic009G226600 Sobic009G226600 Sobic006G182000--Sobic009G226600 Sobic002G087800 Sobic002G087800 Sobic006G182000--Sobic002G087800 Sobic004G321800 Sobic004G321800 Sobic006G182000--Sobic004G321800 Sobic003G087200 Sobic003G087200 Sobic006G182000--Sobic003G087200 Sobic006G181300 Sobic006G181300 Sobic006G182000--Sobic006G181300 Sobic009G057300 Sobic009G057300 Sobic006G182000--Sobic009G057300 Sobic006G100332 Sobic006G100332 Sobic006G182000--Sobic006G100332 Sobic001G325200 Sobic001G325200 Sobic006G182000--Sobic001G325200 Sobic001G150600 Sobic001G150600 Sobic006G182000--Sobic001G150600 Sobic008G079300 Sobic008G079300 Sobic009G226600--Sobic008G079300 Sobic009G226600--Sobic002G087800 Sobic009G207600 Sobic009G207600 Sobic009G226600--Sobic009G207600 Sobic001G474500 Sobic001G474500 Sobic009G226600--Sobic001G474500 Sobic008G182700 Sobic008G182700 Sobic009G226600--Sobic008G182700 Sobic003G184900 Sobic003G184900 Sobic009G226600--Sobic003G184900 Sobic002G324000 Sobic002G324000 Sobic009G226600--Sobic002G324000 Sobic009G226600--Sobic006G181300 Sobic001G359500 Sobic001G359500 Sobic009G226600--Sobic001G359500 Sobic005G024900 Sobic005G024900 Sobic002G087800--Sobic005G024900 Sobic002G087800--Sobic009G057300 Sobic003G388251 Sobic003G388251 Sobic002G087800--Sobic003G388251 Sobic002G087800--Sobic009G226600 Sobic003G241500 Sobic003G241500 Sobic002G087800--Sobic003G241500 Sobic002G087800--Sobic001G474500 Sobic003G061800 Sobic003G061800 Sobic002G087800--Sobic003G061800 Sobic001G305800 Sobic001G305800 Sobic002G087800--Sobic001G305800 Sobic005G178100 Sobic005G178100 Sobic002G087800--Sobic005G178100 Sobic004G321800--Sobic006G100332 Sobic004G321800--Sobic003G087200 Sobic003G148800 Sobic003G148800 Sobic004G321800--Sobic003G148800 Sobic009G226300 Sobic009G226300 Sobic004G321800--Sobic009G226300 Sobic004G321800--Sobic001G325200 Sobic003G105800 Sobic003G105800 Sobic004G321800--Sobic003G105800 Sobic004G321800--Sobic003G184900 Sobic004G321800--Sobic001G150600 Sobic004G320600 Sobic004G320600 Sobic004G321800--Sobic004G320600 Sobic003G087200--Sobic001G150600 Sobic003G087200--Sobic006G100332 Sobic003G087200--Sobic004G321800 Sobic006G030700 Sobic006G030700 Sobic003G087200--Sobic006G030700 Sobic003G087200--Sobic009G226300 Sobic006G091700 Sobic006G091700 Sobic003G087200--Sobic006G091700 Sobic003G087200--Sobic003G148800 Sobic008G153400 Sobic008G153400 Sobic003G087200--Sobic008G153400 Sobic009G114000 Sobic009G114000 Sobic003G087200--Sobic009G114000 Sobic001G069900 Sobic001G069900 Sobic006G181300--Sobic001G069900 Sobic006G181300--Sobic003G087200 Sobic006G181300--Sobic009G114000 Sobic006G181300--Sobic006G091700 Sobic006G181300--Sobic004G321800 Sobic006G181300--Sobic009G207600 Sobic001G015500 Sobic001G015500 Sobic006G181300--Sobic001G015500 Sobic006G181300--Sobic008G079300 Sobic006G181300--Sobic001G150600 Sobic009G057300--Sobic003G061800 Sobic009G057300--Sobic001G474500 Sobic007G068100 Sobic007G068100 Sobic009G057300--Sobic007G068100 Sobic009G057300--Sobic001G325200 Sobic009G057300--Sobic003G388251 Sobic003G329400 Sobic003G329400 Sobic009G057300--Sobic003G329400 Sobic003G354400 Sobic003G354400 Sobic009G057300--Sobic003G354400 Sobic001G334600 Sobic001G334600 Sobic009G057300--Sobic001G334600 Sobic001G322700 Sobic001G322700 Sobic009G057300--Sobic001G322700 Sobic006G100332--Sobic001G150600 Sobic006G100332--Sobic003G087200 Sobic006G100332--Sobic009G226300 Sobic009G054500 Sobic009G054500 Sobic006G100332--Sobic009G054500 Sobic006G100332--Sobic004G321800 Sobic007G187300 Sobic007G187300 Sobic006G100332--Sobic007G187300 Sobic006G100332--Sobic006G030700 Sobic001G249300 Sobic001G249300 Sobic006G100332--Sobic001G249300 Sobic006G100332--Sobic003G148800 Sobic001G325200--Sobic007G068100 Sobic001G325200--Sobic009G226300 Sobic001G325200--Sobic003G148800 Sobic001G325200--Sobic004G321800 Sobic004G101900 Sobic004G101900 Sobic001G325200--Sobic004G101900 Sobic002G304000 Sobic002G304000 Sobic001G325200--Sobic002G304000 Sobic001G325200--Sobic009G054500 Sobic001G325200--Sobic001G015500 Sobic003G355600 Sobic003G355600 Sobic001G325200--Sobic003G355600 Sobic001G150600--Sobic003G087200 Sobic001G150600--Sobic006G100332 Sobic001G150600--Sobic008G153400 Sobic001G150600--Sobic006G030700 Sobic001G150600--Sobic009G226300 Sobic001G150600--Sobic003G148800 Sobic001G150600--Sobic001G325200 Sobic001G150600--Sobic009G054500 Sobic001G150600--Sobic004G321800
Octagon: transcription factors


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