Gene annotation
Transcriptome id Sobic.006G232500.1
Synonym Sb06g030020, BFN1, ENDO1
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
nuclease PA3, putative, expressed
UniProt C5YGR7
Pfam PF02265
Panther DB PTHR33146 PTHR33146:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006308; DNA catabolic process GO:0004519endonuclease activity GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G11190 : bifunctional nuclease i
RAP-DB (Rice) LOC_Os04g54390.1 : nuclease PA3, putative, expressed
MaizeGDB (Corn) Zm00025a006373
Brachypodium KQJ84850
Barley HORVU2Hr1G116300.7 , HORVU2Hr1G116300.6 , HORVU2Hr1G116300.2 , HORVU2Hr1G116300.9 , HORVU2Hr1G116300.8 , HORVU2Hr1G116300.16 , HORVU2Hr1G116300.15 , HORVU2Hr1G116300.14 , HORVU2Hr1G116300.13 , HORVU2Hr1G116300.12 , HORVU2Hr1G116300.11 , HORVU2Hr1G116300.10
Wheat TraesCS2A02G527100 , TraesCS2D02G530000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G421900 glycosyl hydrolases family 17, putative, expressed -
2 Sobic.001G359700 expressed protein -
3 Sobic.005G003750 - -
4 Sobic.003G153500 GDSL-like lipase/acylhydrolase, putative, expressed -
5 Sobic.001G196700 OsProCP3 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed -
6 Sobic.007G172100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@vignain precursor, putative, expressed K16292: CEP, KDEL-tailed cysteine endopeptidase
7 Sobic.010G037200 SAM dependent carboxyl methyltransferase, putative, expressed -
8 Sobic.010G168500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
9 Sobic.001G368900 IQ calmodulin-binding motif family protein, putative, expressed -
10 Sobic.002G240800 - -
11 Sobic.010G189700 aspartic proteinase, putative, expressed -
12 Sobic.010G061700 jp18, putative, expressed -
13 Sobic.008G039700 expressed protein -
14 Sobic.009G013400 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
15 Sobic.010G227400 glycosyl hydrolase, family 31, putative, expressed K01187: alpha-glucosidase
16 Sobic.009G025100 transporter, putative, expressed -
17 Sobic.001G277800 transferase family protein, putative, expressed -
18 Sobic.009G227000 expressed protein -
19 Sobic.003G217500 expressed protein -
20 Sobic.001G442200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Ser/Thr protein phosphatase family protein, putative, expressed K14379: tartrate-resistant acid phosphatase type 5


Gene co-expression network
sample Sobic006G232500 Sobic006G232500 Sobic003G421900 Sobic003G421900 Sobic006G232500--Sobic003G421900 Sobic001G359700 Sobic001G359700 Sobic006G232500--Sobic001G359700 Sobic005G003750 Sobic005G003750 Sobic006G232500--Sobic005G003750 Sobic003G153500 Sobic003G153500 Sobic006G232500--Sobic003G153500 Sobic001G196700 Sobic001G196700 Sobic006G232500--Sobic001G196700 Sobic007G172100 Sobic007G172100 Sobic006G232500--Sobic007G172100 Sobic010G037200 Sobic010G037200 Sobic006G232500--Sobic010G037200 Sobic010G168500 Sobic010G168500 Sobic006G232500--Sobic010G168500 Sobic001G368900 Sobic001G368900 Sobic006G232500--Sobic001G368900 Sobic009G009800 Sobic009G009800 Sobic003G421900--Sobic009G009800 Sobic006G244500 Sobic006G244500 Sobic003G421900--Sobic006G244500 Sobic006G096200 Sobic006G096200 Sobic003G421900--Sobic006G096200 Sobic010G136300 Sobic010G136300 Sobic003G421900--Sobic010G136300 Sobic003G421900--Sobic001G368900 Sobic008G037000 Sobic008G037000 Sobic003G421900--Sobic008G037000 Sobic001G277800 Sobic001G277800 Sobic003G421900--Sobic001G277800 Sobic010G031600 Sobic010G031600 Sobic003G421900--Sobic010G031600 Sobic003G376000 Sobic003G376000 Sobic003G421900--Sobic003G376000 Sobic001G359700--Sobic006G232500 Sobic002G123100 Sobic002G123100 Sobic001G359700--Sobic002G123100 Sobic001G505300 Sobic001G505300 Sobic001G359700--Sobic001G505300 Sobic001G150300 Sobic001G150300 Sobic001G359700--Sobic001G150300 Sobic001G322832 Sobic001G322832 Sobic001G359700--Sobic001G322832 Sobic010G061700 Sobic010G061700 Sobic001G359700--Sobic010G061700 Sobic001G359700--Sobic007G172100 Sobic001G442200 Sobic001G442200 Sobic001G359700--Sobic001G442200 Sobic004G085800 Sobic004G085800 Sobic001G359700--Sobic004G085800 Sobic005G003750--Sobic010G168500 Sobic008G039700 Sobic008G039700 Sobic005G003750--Sobic008G039700 Sobic009G071600 Sobic009G071600 Sobic005G003750--Sobic009G071600 Sobic010G227400 Sobic010G227400 Sobic005G003750--Sobic010G227400 Sobic009G025100 Sobic009G025100 Sobic005G003750--Sobic009G025100 Sobic005G153200 Sobic005G153200 Sobic005G003750--Sobic005G153200 Sobic001G259250 Sobic001G259250 Sobic005G003750--Sobic001G259250 Sobic004G142000 Sobic004G142000 Sobic005G003750--Sobic004G142000 Sobic005G193700 Sobic005G193700 Sobic005G003750--Sobic005G193700 Sobic009G013400 Sobic009G013400 Sobic003G153500--Sobic009G013400 Sobic008G088450 Sobic008G088450 Sobic003G153500--Sobic008G088450 Sobic009G227000 Sobic009G227000 Sobic003G153500--Sobic009G227000 Sobic009G007500 Sobic009G007500 Sobic003G153500--Sobic009G007500 Sobic003G153500--Sobic010G227400 Sobic001G170500 Sobic001G170500 Sobic003G153500--Sobic001G170500 Sobic005G056100 Sobic005G056100 Sobic003G153500--Sobic005G056100 Sobic010G109700 Sobic010G109700 Sobic003G153500--Sobic010G109700 Sobic001G096500 Sobic001G096500 Sobic003G153500--Sobic001G096500 Sobic006G132400 Sobic006G132400 Sobic001G196700--Sobic006G132400 Sobic001G367700 Sobic001G367700 Sobic001G196700--Sobic001G367700 Sobic001G196700--Sobic010G168500 Sobic001G196700--Sobic003G376000 Sobic002G077600 Sobic002G077600 Sobic001G196700--Sobic002G077600 Sobic007G049400 Sobic007G049400 Sobic001G196700--Sobic007G049400 Sobic001G112250 Sobic001G112250 Sobic001G196700--Sobic001G112250 Sobic005G112066 Sobic005G112066 Sobic001G196700--Sobic005G112066 Sobic001G253501 Sobic001G253501 Sobic001G196700--Sobic001G253501 Sobic001G200900 Sobic001G200900 Sobic007G172100--Sobic001G200900 Sobic009G061900 Sobic009G061900 Sobic007G172100--Sobic009G061900 Sobic009G052400 Sobic009G052400 Sobic007G172100--Sobic009G052400 Sobic005G174000 Sobic005G174000 Sobic007G172100--Sobic005G174000 Sobic004G133600 Sobic004G133600 Sobic007G172100--Sobic004G133600 Sobic005G186300 Sobic005G186300 Sobic007G172100--Sobic005G186300 Sobic002G293100 Sobic002G293100 Sobic007G172100--Sobic002G293100 Sobic002G192600 Sobic002G192600 Sobic007G172100--Sobic002G192600 Sobic004G171600 Sobic004G171600 Sobic007G172100--Sobic004G171600 Sobic010G037200--Sobic009G025100 Sobic010G037200--Sobic008G039700 Sobic010G037200--Sobic010G227400 Sobic010G085700 Sobic010G085700 Sobic010G037200--Sobic010G085700 Sobic009G040000 Sobic009G040000 Sobic010G037200--Sobic009G040000 Sobic001G068200 Sobic001G068200 Sobic010G037200--Sobic001G068200 Sobic001G253400 Sobic001G253400 Sobic010G037200--Sobic001G253400 Sobic001G158600 Sobic001G158600 Sobic010G037200--Sobic001G158600 Sobic006G051750 Sobic006G051750 Sobic010G037200--Sobic006G051750 Sobic010G168500--Sobic008G039700 Sobic010G168500--Sobic009G071600 Sobic007G034900 Sobic007G034900 Sobic010G168500--Sobic007G034900 Sobic010G168500--Sobic001G259250 Sobic010G168500--Sobic005G153200 Sobic010G200200 Sobic010G200200 Sobic010G168500--Sobic010G200200 Sobic010G168500--Sobic004G142000 Sobic001G037800 Sobic001G037800 Sobic010G168500--Sobic001G037800 Sobic002G338600 Sobic002G338600 Sobic010G168500--Sobic002G338600 Sobic001G368900--Sobic009G227000 Sobic001G368900--Sobic006G096200 Sobic001G368900--Sobic001G277800 Sobic001G368900--Sobic010G031600 Sobic004G254400 Sobic004G254400 Sobic001G368900--Sobic004G254400 Sobic001G368900--Sobic005G003750 Sobic003G350900 Sobic003G350900 Sobic001G368900--Sobic003G350900 Sobic007G083300 Sobic007G083300 Sobic001G368900--Sobic007G083300 SobicK043500 SobicK043500 Sobic001G368900--SobicK043500
Octagon: transcription factors


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