Gene annotation
Transcriptome id Sobic.007G048200.1
Synonym Sb07g003920
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
berberine and berberine like domain containing protein, expressed
UniProt C5YHB1
Pfam PF08031 PF01565
Panther DB PTHR32448 PTHR32448:SF13
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT1G30760 : FAD-binding Berberine family protein
RAP-DB (Rice) LOC_Os08g06170.1 : berberine and berberine like domain containing protein, expressed
MaizeGDB (Corn) Zm00025a048836 , Zm00025a030076 , Zm00025a030074
Brachypodium -
Barley HORVU4Hr1G017270.1 , HORVU2Hr1G122590.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G099700 receptor-like protein kinase 5 precursor, putative, expressed -
2 Sobic.006G123500 peptide methionine sulfoxide reductase, putative, expressed K07304: peptide-methionine (S)-S-oxide reductase
3 Sobic.009G140000 MLO domain containing protein, putative, expressed K08472: mlo protein
4 Sobic.005G187900 TKL_IRAK_DUF26-lh.5 - DUF26 kinases have homology to DUF26 containing loci, expressed -
5 Sobic.006G055000 TKL_IRAK_DUF26-lc.12 - DUF26 kinases have homology to DUF26 containing loci, expressed -
6 Sobic.001G404500 gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed K08059: IFI30, interferon, gamma-inducible protein 30
7 Sobic.001G317400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
8 Sobic.004G063200 B-box (BBX) protein(PubMedID : 30626335)@CCT/B-box zinc finger protein, putative, expressed -
9 Sobic.008G054100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
10 Sobic.002G211000 DUF581 domain containing protein, expressed -
11 Sobic.009G023401 - -
12 Sobic.004G097000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@F-box family protein, putative, expressed -
13 Sobic.005G097800 eukaryotic aspartyl protease domain containing protein, expressed -
14 Sobic.003G392700 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
15 Sobic.002G286400 uncharacterized protein PA4923, putative, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
16 Sobic.010G161201 - -
17 Sobic.010G225600 - -
18 Sobic.008G067500 protein kinase, putative, expressed -
19 Sobic.003G366100 expressed protein -
20 Sobic.009G189000 expressed protein -


Gene co-expression network
sample Sobic007G048200 Sobic007G048200 Sobic004G099700 Sobic004G099700 Sobic007G048200--Sobic004G099700 Sobic006G123500 Sobic006G123500 Sobic007G048200--Sobic006G123500 Sobic009G140000 Sobic009G140000 Sobic007G048200--Sobic009G140000 Sobic005G187900 Sobic005G187900 Sobic007G048200--Sobic005G187900 Sobic006G055000 Sobic006G055000 Sobic007G048200--Sobic006G055000 Sobic001G404500 Sobic001G404500 Sobic007G048200--Sobic001G404500 Sobic001G317400 Sobic001G317400 Sobic007G048200--Sobic001G317400 Sobic004G063200 Sobic004G063200 Sobic007G048200--Sobic004G063200 Sobic008G054100 Sobic008G054100 Sobic007G048200--Sobic008G054100 Sobic004G099700--Sobic006G123500 Sobic004G099700--Sobic001G404500 Sobic007G025900 Sobic007G025900 Sobic004G099700--Sobic007G025900 Sobic008G060300 Sobic008G060300 Sobic004G099700--Sobic008G060300 Sobic004G099700--Sobic004G063200 Sobic003G410900 Sobic003G410900 Sobic004G099700--Sobic003G410900 Sobic008G065200 Sobic008G065200 Sobic004G099700--Sobic008G065200 Sobic006G164300 Sobic006G164300 Sobic004G099700--Sobic006G164300 Sobic010G193000 Sobic010G193000 Sobic004G099700--Sobic010G193000 Sobic004G268500 Sobic004G268500 Sobic006G123500--Sobic004G268500 Sobic006G123500--Sobic001G404500 Sobic006G123500--Sobic004G099700 Sobic006G123500--Sobic005G187900 Sobic003G284800 Sobic003G284800 Sobic006G123500--Sobic003G284800 Sobic002G046900 Sobic002G046900 Sobic006G123500--Sobic002G046900 Sobic006G123500--Sobic004G063200 Sobic006G123500--Sobic008G065200 Sobic002G001900 Sobic002G001900 Sobic006G123500--Sobic002G001900 Sobic006G260800 Sobic006G260800 Sobic009G140000--Sobic006G260800 Sobic005G001700 Sobic005G001700 Sobic009G140000--Sobic005G001700 Sobic009G140000--Sobic006G055000 Sobic009G062400 Sobic009G062400 Sobic009G140000--Sobic009G062400 Sobic001G517700 Sobic001G517700 Sobic009G140000--Sobic001G517700 Sobic002G403600 Sobic002G403600 Sobic009G140000--Sobic002G403600 Sobic009G123900 Sobic009G123900 Sobic009G140000--Sobic009G123900 Sobic008G052900 Sobic008G052900 Sobic009G140000--Sobic008G052900 Sobic009G219100 Sobic009G219100 Sobic009G140000--Sobic009G219100 Sobic005G187900--Sobic006G123500 Sobic005G187900--Sobic006G055000 Sobic005G187900--Sobic001G404500 Sobic005G187900--Sobic004G099700 Sobic005G097800 Sobic005G097800 Sobic005G187900--Sobic005G097800 Sobic002G211000 Sobic002G211000 Sobic005G187900--Sobic002G211000 Sobic010G225600 Sobic010G225600 Sobic005G187900--Sobic010G225600 Sobic005G187900--Sobic001G317400 Sobic005G187900--Sobic004G268500 Sobic006G055000--Sobic005G187900 Sobic006G055000--Sobic009G140000 Sobic002G232200 Sobic002G232200 Sobic006G055000--Sobic002G232200 Sobic008G157600 Sobic008G157600 Sobic006G055000--Sobic008G157600 Sobic003G255900 Sobic003G255900 Sobic006G055000--Sobic003G255900 Sobic006G055000--Sobic006G260800 Sobic004G298900 Sobic004G298900 Sobic006G055000--Sobic004G298900 Sobic006G055000--Sobic004G268500 Sobic006G055000--Sobic009G062400 Sobic001G404500--Sobic006G123500 Sobic001G404500--Sobic004G063200 Sobic002G281000 Sobic002G281000 Sobic001G404500--Sobic002G281000 Sobic008G063100 Sobic008G063100 Sobic001G404500--Sobic008G063100 Sobic001G525900 Sobic001G525900 Sobic001G404500--Sobic001G525900 Sobic001G404500--Sobic003G410900 Sobic001G404500--Sobic004G268500 Sobic009G189000 Sobic009G189000 Sobic001G404500--Sobic009G189000 Sobic001G404500--Sobic004G099700 Sobic002G036000 Sobic002G036000 Sobic001G317400--Sobic002G036000 Sobic001G391900 Sobic001G391900 Sobic001G317400--Sobic001G391900 Sobic003G443500 Sobic003G443500 Sobic001G317400--Sobic003G443500 Sobic008G026800 Sobic008G026800 Sobic001G317400--Sobic008G026800 Sobic001G317400--Sobic002G403600 Sobic007G034300 Sobic007G034300 Sobic001G317400--Sobic007G034300 Sobic001G158900 Sobic001G158900 Sobic001G317400--Sobic001G158900 Sobic005G118300 Sobic005G118300 Sobic001G317400--Sobic005G118300 Sobic008G053200 Sobic008G053200 Sobic001G317400--Sobic008G053200 Sobic002G265400 Sobic002G265400 Sobic004G063200--Sobic002G265400 Sobic004G063200--Sobic001G404500 Sobic004G063200--Sobic002G281000 Sobic006G060800 Sobic006G060800 Sobic004G063200--Sobic006G060800 Sobic004G063200--Sobic009G189000 Sobic001G198700 Sobic001G198700 Sobic004G063200--Sobic001G198700 Sobic004G063200--Sobic008G063100 Sobic001G019300 Sobic001G019300 Sobic004G063200--Sobic001G019300 Sobic004G063200--Sobic006G123500 Sobic003G366100 Sobic003G366100 Sobic008G054100--Sobic003G366100 Sobic002G064200 Sobic002G064200 Sobic008G054100--Sobic002G064200 Sobic003G256000 Sobic003G256000 Sobic008G054100--Sobic003G256000 Sobic001G363200 Sobic001G363200 Sobic008G054100--Sobic001G363200 Sobic005G193500 Sobic005G193500 Sobic008G054100--Sobic005G193500 Sobic008G054100--Sobic008G060300 Sobic002G173900 Sobic002G173900 Sobic008G054100--Sobic002G173900 Sobic010G172300 Sobic010G172300 Sobic008G054100--Sobic010G172300 Sobic008G054100--Sobic004G099700
Octagon: transcription factors


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