Gene annotation
Transcriptome id Sobic.004G097000.1
Synonym Sb04g007980
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
F-box family protein, putative, expressed
UniProt C5XYG5
Pfam PF14476
Panther DB PTHR33358 PTHR33358:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G04480 : -
RAP-DB (Rice) LOC_Os02g13220.1 : F-box family protein, putative, expressed
MaizeGDB (Corn) Zm00025a020140 , Zm00025a020139 , Zm00025a034539
Brachypodium KQJ94094 , KQJ94095 , KQJ94096
Barley HORVU6Hr1G019800.1 , HORVU6Hr1G030350.1 , HORVU7Hr1G022340.1 , HORVU6Hr1G019870.1 , HORVU7Hr1G038560.4 , HORVU7Hr1G038560.3 , HORVU7Hr1G038560.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G211000 DUF581 domain containing protein, expressed -
2 Sobic.001G317400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
3 Sobic.007G034300 expressed protein -
4 Sobic.008G026800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@BTBN22 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
5 Sobic.008G053200 fructose-bisphosphate aldolase 2(PubMedID : 26465154)@fructose-bisphosphate aldolase 2("PubMedID : 26759170,PubMedID : 24597475")@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
6 Sobic.002G036000 -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed K11517: (S)-2-hydroxy-acid oxidase
7 Sobic.005G165500 OsSub17 - Putative Subtilisin homologue, expressed -
8 Sobic.001G242600 thaumatin family domain containing protein, expressed -
9 Sobic.002G403600 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@rhythmically expressed gene 2 protein, putative, expressed -
10 Sobic.005G089600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Sucrose phosphate synthase genes(PubMedID : 24456189)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
11 Sobic.003G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed K01673: cynT, carbonic anhydrase
12 Sobic.006G116050 - -
13 Sobic.001G463200 BTBN5 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
14 Sobic.001G158900 helix-loop-helix DNA-binding domain containing protein, expressed K16189: phytochrome-interacting factor 4
15 Sobic.004G073500 "domain confirmed by Pfam database, expressed in leaf, flower and root, expression induced by BR treatment"(PubMedID : 20528920)@multidrug resistance protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
16 Sobic.002G324500 PPDK regulatory protein(PubMedID : 26465154)@PPDK regulatory protein(PubMedID : 26465154)@-(PubMedID : 26976818)@pyruvate orthophosphate dikinase regulatory protein(PubMedID : 27016024)@pyruvate Pi dikinase regulatory protein, putative, expressed K09773: [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase
17 Sobic.003G431900 -(PubMedID : 26976818)@expressed protein K07562: nonsense-mediated mRNA decay protein 3
18 Sobic.003G266500 Phosphoethanolamine N-methyltransferase XPL1 (At)(PubMedID : 27208977)@CPuORF25 - conserved peptide uORF-containing transcript, expressed K05929: E2.1.1.103, phosphoethanolamine N-methyltransferase
19 Sobic.008G033200 stem-specific protein TSJT1, putative, expressed -
20 Sobic.006G055000 TKL_IRAK_DUF26-lc.12 - DUF26 kinases have homology to DUF26 containing loci, expressed -


Gene co-expression network
sample Sobic004G097000 Sobic004G097000 Sobic002G211000 Sobic002G211000 Sobic004G097000--Sobic002G211000 Sobic001G317400 Sobic001G317400 Sobic004G097000--Sobic001G317400 Sobic007G034300 Sobic007G034300 Sobic004G097000--Sobic007G034300 Sobic008G026800 Sobic008G026800 Sobic004G097000--Sobic008G026800 Sobic008G053200 Sobic008G053200 Sobic004G097000--Sobic008G053200 Sobic002G036000 Sobic002G036000 Sobic004G097000--Sobic002G036000 Sobic005G165500 Sobic005G165500 Sobic004G097000--Sobic005G165500 Sobic001G242600 Sobic001G242600 Sobic004G097000--Sobic001G242600 Sobic002G403600 Sobic002G403600 Sobic004G097000--Sobic002G403600 Sobic004G051100 Sobic004G051100 Sobic002G211000--Sobic004G051100 Sobic002G211000--Sobic007G034300 Sobic010G245200 Sobic010G245200 Sobic002G211000--Sobic010G245200 Sobic007G053800 Sobic007G053800 Sobic002G211000--Sobic007G053800 Sobic001G517700 Sobic001G517700 Sobic002G211000--Sobic001G517700 Sobic002G211000--Sobic008G053200 Sobic005G183400 Sobic005G183400 Sobic002G211000--Sobic005G183400 Sobic006G188000 Sobic006G188000 Sobic002G211000--Sobic006G188000 Sobic002G211000--Sobic005G165500 Sobic001G317400--Sobic002G036000 Sobic001G391900 Sobic001G391900 Sobic001G317400--Sobic001G391900 Sobic003G443500 Sobic003G443500 Sobic001G317400--Sobic003G443500 Sobic001G317400--Sobic008G026800 Sobic001G317400--Sobic002G403600 Sobic001G317400--Sobic007G034300 Sobic001G158900 Sobic001G158900 Sobic001G317400--Sobic001G158900 Sobic005G118300 Sobic005G118300 Sobic001G317400--Sobic005G118300 Sobic001G317400--Sobic008G053200 Sobic001G520800 Sobic001G520800 Sobic007G034300--Sobic001G520800 Sobic007G034300--Sobic005G165500 Sobic009G244300 Sobic009G244300 Sobic007G034300--Sobic009G244300 Sobic007G034300--Sobic008G053200 Sobic004G283100 Sobic004G283100 Sobic007G034300--Sobic004G283100 Sobic008G104601 Sobic008G104601 Sobic007G034300--Sobic008G104601 Sobic002G233300 Sobic002G233300 Sobic007G034300--Sobic002G233300 Sobic003G231800 Sobic003G231800 Sobic007G034300--Sobic003G231800 Sobic004G305800 Sobic004G305800 Sobic007G034300--Sobic004G305800 Sobic001G463200 Sobic001G463200 Sobic008G026800--Sobic001G463200 Sobic006G147300 Sobic006G147300 Sobic008G026800--Sobic006G147300 Sobic008G026800--Sobic001G317400 Sobic008G026800--Sobic002G036000 Sobic008G026800--Sobic008G053200 Sobic003G431900 Sobic003G431900 Sobic008G026800--Sobic003G431900 Sobic007G207800 Sobic007G207800 Sobic008G026800--Sobic007G207800 Sobic003G199800 Sobic003G199800 Sobic008G026800--Sobic003G199800 Sobic004G272600 Sobic004G272600 Sobic008G026800--Sobic004G272600 Sobic008G053200--Sobic003G431900 Sobic001G519800 Sobic001G519800 Sobic008G053200--Sobic001G519800 Sobic003G234200 Sobic003G234200 Sobic008G053200--Sobic003G234200 Sobic008G053200--Sobic002G036000 Sobic004G238600 Sobic004G238600 Sobic008G053200--Sobic004G238600 Sobic008G053200--Sobic004G283100 Sobic004G272100 Sobic004G272100 Sobic008G053200--Sobic004G272100 Sobic004G308700 Sobic004G308700 Sobic008G053200--Sobic004G308700 Sobic005G089600 Sobic005G089600 Sobic008G053200--Sobic005G089600 Sobic002G036000--Sobic008G053200 Sobic001G102800 Sobic001G102800 Sobic002G036000--Sobic001G102800 Sobic002G036000--Sobic004G308700 Sobic002G036000--Sobic001G519800 Sobic003G431700 Sobic003G431700 Sobic002G036000--Sobic003G431700 Sobic006G101500 Sobic006G101500 Sobic002G036000--Sobic006G101500 Sobic002G036000--Sobic003G443500 Sobic002G036000--Sobic004G272100 Sobic008G066100 Sobic008G066100 Sobic002G036000--Sobic008G066100 Sobic005G165500--Sobic004G305800 Sobic005G165500--Sobic003G431900 Sobic005G165500--Sobic008G053200 Sobic005G165500--Sobic003G234200 Sobic009G129300 Sobic009G129300 Sobic005G165500--Sobic009G129300 Sobic005G165500--Sobic007G034300 Sobic010G201700 Sobic010G201700 Sobic005G165500--Sobic010G201700 Sobic003G398800 Sobic003G398800 Sobic005G165500--Sobic003G398800 Sobic005G165500--Sobic004G272100 Sobic001G242600--Sobic001G391900 Sobic002G102200 Sobic002G102200 Sobic001G242600--Sobic002G102200 Sobic006G260800 Sobic006G260800 Sobic001G242600--Sobic006G260800 Sobic003G392700 Sobic003G392700 Sobic001G242600--Sobic003G392700 Sobic004G227200 Sobic004G227200 Sobic001G242600--Sobic004G227200 Sobic005G111500 Sobic005G111500 Sobic001G242600--Sobic005G111500 Sobic006G210400 Sobic006G210400 Sobic001G242600--Sobic006G210400 Sobic004G298900 Sobic004G298900 Sobic001G242600--Sobic004G298900 Sobic001G186200 Sobic001G186200 Sobic001G242600--Sobic001G186200 Sobic001G531500 Sobic001G531500 Sobic002G403600--Sobic001G531500 Sobic004G027600 Sobic004G027600 Sobic002G403600--Sobic004G027600 Sobic006G064100 Sobic006G064100 Sobic002G403600--Sobic006G064100 Sobic001G073900 Sobic001G073900 Sobic002G403600--Sobic001G073900 Sobic004G356400 Sobic004G356400 Sobic002G403600--Sobic004G356400 Sobic003G036200 Sobic003G036200 Sobic002G403600--Sobic003G036200 Sobic006G120500 Sobic006G120500 Sobic002G403600--Sobic006G120500 Sobic005G001700 Sobic005G001700 Sobic002G403600--Sobic005G001700 Sobic010G251700 Sobic010G251700 Sobic002G403600--Sobic010G251700
Octagon: transcription factors


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