Gene annotation
Transcriptome id Sobic.007G098800.1,Sobic.007G098800.2
Synonym ATFPG-1, ATMMH-2, MMH-1, FPG-2, MMH-2, Sb07g010660, FPG-1, ATMMH-1, ATFPG-2
Functional annotation formamidopyrimidine-DNA glycosylase, putative, expressed
UniProt A0A1Z5R904 , A0A1Z5R9X9
Pfam PF06831 PF01149 PF01149 PF06831
Panther DB PTHR22993 PTHR22993:SF17
NCBI CDD -
KEGG Orthology K10563; mutM, formamidopyrimidine-DNA glycosylase
Gene Ontology GO:0016799; hydrolase activity, hydrolyzing N-glycosyl compounds GO:0008270zinc ion binding GO:0006284base-excision repair GO:0003906DNA-(apurinic or apyrimidinic site) endonuclease activity GO:0003684damaged DNA binding GO:0006289nucleotide-excision repair GO:0016799hydrolase activity, hydrolyzing N-glycosyl compounds GO:0008270zinc ion binding GO:0006289nucleotide-excision repair GO:0003906DNA-(apurinic or apyrimidinic site) endonuclease activity GO:0003684damaged DNA binding GO:0006284base-excision repair


Orthologs (automatic annotation)
TAIR AT1G52500 : MUTM homolog-1
RAP-DB (Rice) LOC_Os08g21330.1 : formamidopyrimidine-DNA glycosylase, putative, expressed
MaizeGDB (Corn) -
Brachypodium PNT67069 , PNT67070 , PNT67071 , KQJ95999 , KQJ96001 , KQJ96000 , KQJ96002
Barley HORVU7Hr1G115580.1 , HORVU7Hr1G115580.3 , HORVU7Hr1G115580.2 , HORVU7Hr1G115580.5 , HORVU7Hr1G115580.4 , HORVU7Hr1G115580.6 , HORVU2Hr1G003350.11 , HORVU2Hr1G003350.10 , HORVU2Hr1G003350.9 , HORVU2Hr1G003350.8 , HORVU2Hr1G003350.5 , HORVU2Hr1G003350.4 , HORVU2Hr1G003350.7 , HORVU2Hr1G003350.6 , HORVU2Hr1G003350.1 , HORVU2Hr1G003350.3 , HORVU2Hr1G003350.2
Wheat TraesCS2D02G022800 , TraesCS7A02G518500 , TraesCS2A02G022000 , TraesCS7B02G434500 , TraesCS2B02G030800 , TraesCS2B02G030800 , TraesCS7A02G518400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G180600 - -
2 Sobic.007G095300 cbbY protein-related, putative, expressed -
3 Sobic.003G232001 - -
4 Sobic.001G419600 DnaK family protein, putative, expressed -
5 Sobic.002G296500 dihydroneopterin aldolase, putative, expressed K01633: 7,8-dihydroneopterin aldolase/epimerase/oxygenase
6 Sobic.002G171101 - -
7 Sobic.010G163400 peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed -
8 Sobic.003G234600 carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@C4 carbon fixation(PubMedID : 28620409)@carbonic anhydrase, chloroplast precursor, putative, expressed K01673: cynT, carbonic anhydrase
9 Sobic.004G003600 - -
10 Sobic.005G150400 - -
11 Sobic.002G124600 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
12 Sobic.003G174400 - -
13 Sobic.004G284001 - -
14 Sobic.009G007200 expressed protein -
15 Sobic.002G077400 receptor-like protein kinase precursor, putative, expressed -
16 Sobic.001G542150 - -
17 Sobic.010G125500 zinc finger, C3HC4 type domain containing protein, expressed K10601: SYVN1, E3 ubiquitin-protein ligase synoviolin
18 Sobic.006G037900 - -
19 Sobic.001G498700 OsFBO11 - F-box and other domain containing protein, expressed -
20 Sobic.008G021400 cysteine-rich receptor-like protein kinase 7 precursor, putative, expressed -


Gene co-expression network
sample Sobic007G098800 Sobic007G098800 Sobic003G180600 Sobic003G180600 Sobic007G098800--Sobic003G180600 Sobic007G095300 Sobic007G095300 Sobic007G098800--Sobic007G095300 Sobic003G232001 Sobic003G232001 Sobic007G098800--Sobic003G232001 Sobic001G419600 Sobic001G419600 Sobic007G098800--Sobic001G419600 Sobic002G296500 Sobic002G296500 Sobic007G098800--Sobic002G296500 Sobic002G171101 Sobic002G171101 Sobic007G098800--Sobic002G171101 Sobic010G163400 Sobic010G163400 Sobic007G098800--Sobic010G163400 Sobic003G234600 Sobic003G234600 Sobic007G098800--Sobic003G234600 Sobic004G003600 Sobic004G003600 Sobic007G098800--Sobic004G003600 Sobic009G007200 Sobic009G007200 Sobic003G180600--Sobic009G007200 Sobic003G180600--Sobic003G232001 Sobic003G180600--Sobic007G095300 Sobic005G081900 Sobic005G081900 Sobic003G180600--Sobic005G081900 Sobic002G027232 Sobic002G027232 Sobic003G180600--Sobic002G027232 Sobic005G077200 Sobic005G077200 Sobic003G180600--Sobic005G077200 Sobic008G029200 Sobic008G029200 Sobic003G180600--Sobic008G029200 Sobic003G180600--Sobic007G098800 Sobic006G037900 Sobic006G037900 Sobic003G180600--Sobic006G037900 Sobic007G095300--Sobic003G180600 Sobic007G095300--Sobic002G171101 Sobic004G284001 Sobic004G284001 Sobic007G095300--Sobic004G284001 Sobic007G095300--Sobic004G003600 Sobic007G095300--Sobic006G037900 Sobic001G038601 Sobic001G038601 Sobic007G095300--Sobic001G038601 Sobic007G095300--Sobic001G419600 Sobic002G137850 Sobic002G137850 Sobic007G095300--Sobic002G137850 Sobic002G077400 Sobic002G077400 Sobic007G095300--Sobic002G077400 Sobic003G232001--Sobic003G180600 Sobic003G232001--Sobic009G007200 Sobic003G232001--Sobic001G419600 Sobic003G232001--Sobic007G095300 Sobic003G232001--Sobic007G098800 Sobic003G232001--Sobic005G081900 Sobic005G150400 Sobic005G150400 Sobic003G232001--Sobic005G150400 Sobic003G232001--Sobic004G003600 Sobic003G232001--Sobic002G027232 Sobic010G024200 Sobic010G024200 Sobic001G419600--Sobic010G024200 Sobic005G221900 Sobic005G221900 Sobic001G419600--Sobic005G221900 Sobic001G419600--Sobic004G003600 Sobic001G419600--Sobic007G095300 Sobic001G419600--Sobic003G232001 Sobic001G419600--Sobic003G180600 Sobic005G205200 Sobic005G205200 Sobic001G419600--Sobic005G205200 Sobic005G073800 Sobic005G073800 Sobic001G419600--Sobic005G073800 Sobic010G060800 Sobic010G060800 Sobic001G419600--Sobic010G060800 Sobic003G288800 Sobic003G288800 Sobic002G296500--Sobic003G288800 Sobic010G113200 Sobic010G113200 Sobic002G296500--Sobic010G113200 Sobic004G338000 Sobic004G338000 Sobic002G296500--Sobic004G338000 Sobic002G296500--Sobic002G171101 Sobic010G223200 Sobic010G223200 Sobic002G296500--Sobic010G223200 Sobic003G348000 Sobic003G348000 Sobic002G296500--Sobic003G348000 Sobic009G259100 Sobic009G259100 Sobic002G296500--Sobic009G259100 Sobic010G178401 Sobic010G178401 Sobic002G296500--Sobic010G178401 Sobic002G161400 Sobic002G161400 Sobic002G296500--Sobic002G161400 Sobic002G171101--Sobic007G095300 Sobic004G154532 Sobic004G154532 Sobic002G171101--Sobic004G154532 Sobic006G235300 Sobic006G235300 Sobic002G171101--Sobic006G235300 Sobic002G124600 Sobic002G124600 Sobic002G171101--Sobic002G124600 Sobic005G095000 Sobic005G095000 Sobic002G171101--Sobic005G095000 Sobic002G171101--Sobic010G223200 Sobic002G379750 Sobic002G379750 Sobic002G171101--Sobic002G379750 Sobic007G006200 Sobic007G006200 Sobic002G171101--Sobic007G006200 Sobic002G171101--Sobic002G137850 Sobic010G135250 Sobic010G135250 Sobic010G163400--Sobic010G135250 Sobic004G111300 Sobic004G111300 Sobic010G163400--Sobic004G111300 Sobic007G185300 Sobic007G185300 Sobic010G163400--Sobic007G185300 Sobic003G179350 Sobic003G179350 Sobic010G163400--Sobic003G179350 Sobic002G129400 Sobic002G129400 Sobic010G163400--Sobic002G129400 Sobic003G207500 Sobic003G207500 Sobic010G163400--Sobic003G207500 Sobic003G251100 Sobic003G251100 Sobic010G163400--Sobic003G251100 Sobic003G166200 Sobic003G166200 Sobic010G163400--Sobic003G166200 Sobic010G121100 Sobic010G121100 Sobic010G163400--Sobic010G121100 Sobic003G340300 Sobic003G340300 Sobic003G234600--Sobic003G340300 Sobic007G090451 Sobic007G090451 Sobic003G234600--Sobic007G090451 Sobic003G314000 Sobic003G314000 Sobic003G234600--Sobic003G314000 Sobic005G192400 Sobic005G192400 Sobic003G234600--Sobic005G192400 Sobic004G085600 Sobic004G085600 Sobic003G234600--Sobic004G085600 Sobic004G035100 Sobic004G035100 Sobic003G234600--Sobic004G035100 Sobic003G234600--Sobic007G098800 Sobic002G196600 Sobic002G196600 Sobic003G234600--Sobic002G196600 Sobic009G018600 Sobic009G018600 Sobic003G234600--Sobic009G018600 Sobic004G003600--Sobic007G095300 Sobic004G003600--Sobic001G419600 Sobic004G175400 Sobic004G175400 Sobic004G003600--Sobic004G175400 Sobic003G409000 Sobic003G409000 Sobic004G003600--Sobic003G409000 Sobic004G003600--Sobic003G232001 Sobic004G003600--Sobic001G038601 Sobic004G003600--Sobic002G077400 Sobic004G003600--Sobic003G180600 Sobic004G003600--Sobic008G029200
Octagon: transcription factors


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