Gene annotation
Transcriptome id Sobic.003G234600.1
Synonym CA4, Sb03g029200, CA; BCA4, ATBCA4, BCA4, CA4 ;SbCA
Functional annotation carbonic anhydrase (PubMedID : 26904072)
- (PubMedID : 26976818)
C4 carbon fixation (PubMedID : 28620409)
carbonic anhydrase, chloroplast precursor, putative, expressed
UniProt A0A1B6Q4X5
Pfam PF00484
Panther DB PTHR11002 PTHR11002:SF7
NCBI CDD KOG1578; Predicted carbonic anhydrase involved in protection against oxidative damage
KEGG Orthology K01673; cynT, carbonic anhydrase
Gene Ontology GO:0008270; zinc ion binding GO:0004089carbonate dehydratase activity


Orthologs (automatic annotation)
TAIR AT1G70410 : beta carbonic anhydrase 4
RAP-DB (Rice) LOC_Os01g45274.4 : carbonic anhydrase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G340300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nodulin, putative, expressed -
2 Sobic.007G090451 - -
3 Sobic.003G314000 jacalin-like lectin domain containing protein, expressed -
4 Sobic.005G192400 stripe rust resistance protein Yr10, putative, expressed -
5 Sobic.004G085600 bZIP transcription factor domain containing protein, expressed K16241: transcription factor HY5
6 Sobic.004G035100 UOS1, putative, expressed -
7 Sobic.007G098800 formamidopyrimidine-DNA glycosylase, putative, expressed K10563: mutM, formamidopyrimidine-DNA glycosylase
8 Sobic.002G196600 1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
9 Sobic.009G018600 TKL_IRAK_CrRLK1L-1.3 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
10 Sobic.002G137850 - -
11 Sobic.006G161500 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
12 Sobic.007G095300 cbbY protein-related, putative, expressed -
13 Sobic.004G322600 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain(PubMedID : 26465154)@protein kinase domain containing protein, expressed -
14 Sobic.010G150100 expressed protein -
15 Sobic.001G498700 OsFBO11 - F-box and other domain containing protein, expressed -
16 Sobic.006G037900 - -
17 Sobic.004G143300 high mobility group, putative, expressed -
18 Sobic.002G219300 ZOS9-13 - C2H2 zinc finger protein, expressed -
19 Sobic.007G090445 - -
20 Sobic.006G235400 ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase


Gene co-expression network
sample Sobic003G234600 Sobic003G234600 Sobic003G340300 Sobic003G340300 Sobic003G234600--Sobic003G340300 Sobic007G090451 Sobic007G090451 Sobic003G234600--Sobic007G090451 Sobic003G314000 Sobic003G314000 Sobic003G234600--Sobic003G314000 Sobic005G192400 Sobic005G192400 Sobic003G234600--Sobic005G192400 Sobic004G085600 Sobic004G085600 Sobic003G234600--Sobic004G085600 Sobic004G035100 Sobic004G035100 Sobic003G234600--Sobic004G035100 Sobic007G098800 Sobic007G098800 Sobic003G234600--Sobic007G098800 Sobic002G196600 Sobic002G196600 Sobic003G234600--Sobic002G196600 Sobic009G018600 Sobic009G018600 Sobic003G234600--Sobic009G018600 Sobic003G340300--Sobic004G035100 Sobic004G344600 Sobic004G344600 Sobic003G340300--Sobic004G344600 Sobic002G161400 Sobic002G161400 Sobic003G340300--Sobic002G161400 Sobic004G128900 Sobic004G128900 Sobic003G340300--Sobic004G128900 Sobic003G339200 Sobic003G339200 Sobic003G340300--Sobic003G339200 Sobic007G121300 Sobic007G121300 Sobic003G340300--Sobic007G121300 Sobic009G246400 Sobic009G246400 Sobic003G340300--Sobic009G246400 Sobic007G065600 Sobic007G065600 Sobic003G340300--Sobic007G065600 Sobic006G191500 Sobic006G191500 Sobic003G340300--Sobic006G191500 Sobic007G090445 Sobic007G090445 Sobic007G090451--Sobic007G090445 Sobic007G090451--Sobic003G340300 Sobic003G409000 Sobic003G409000 Sobic007G090451--Sobic003G409000 Sobic007G090451--Sobic009G018600 Sobic009G197800 Sobic009G197800 Sobic007G090451--Sobic009G197800 Sobic007G090451--Sobic009G246400 Sobic007G090451--Sobic004G344600 Sobic007G090451--Sobic004G035100 Sobic007G090451--Sobic003G339200 Sobic009G194500 Sobic009G194500 Sobic003G314000--Sobic009G194500 Sobic010G231300 Sobic010G231300 Sobic003G314000--Sobic010G231300 Sobic002G056500 Sobic002G056500 Sobic003G314000--Sobic002G056500 Sobic008G129900 Sobic008G129900 Sobic003G314000--Sobic008G129900 Sobic002G119100 Sobic002G119100 Sobic003G314000--Sobic002G119100 Sobic001G244600 Sobic001G244600 Sobic003G314000--Sobic001G244600 Sobic004G322600 Sobic004G322600 Sobic003G314000--Sobic004G322600 Sobic010G104800 Sobic010G104800 Sobic003G314000--Sobic010G104800 Sobic006G161500 Sobic006G161500 Sobic003G314000--Sobic006G161500 Sobic008G029200 Sobic008G029200 Sobic005G192400--Sobic008G029200 Sobic006G176000 Sobic006G176000 Sobic005G192400--Sobic006G176000 Sobic010G208750 Sobic010G208750 Sobic005G192400--Sobic010G208750 Sobic007G095300 Sobic007G095300 Sobic005G192400--Sobic007G095300 Sobic006G037900 Sobic006G037900 Sobic005G192400--Sobic006G037900 Sobic002G027232 Sobic002G027232 Sobic005G192400--Sobic002G027232 Sobic003G180600 Sobic003G180600 Sobic005G192400--Sobic003G180600 Sobic005G192400--Sobic003G234600 Sobic005G223600 Sobic005G223600 Sobic005G192400--Sobic005G223600 Sobic004G085600--Sobic006G161500 Sobic004G085600--Sobic004G035100 Sobic004G085600--Sobic004G322600 Sobic001G073300 Sobic001G073300 Sobic004G085600--Sobic001G073300 Sobic004G085600--Sobic009G194500 Sobic004G085600--Sobic010G231300 Sobic003G409700 Sobic003G409700 Sobic004G085600--Sobic003G409700 Sobic004G085600--Sobic002G196600 Sobic004G085600--Sobic002G119100 Sobic004G035100--Sobic006G161500 Sobic004G035100--Sobic003G340300 Sobic004G035100--Sobic002G161400 Sobic004G035100--Sobic004G322600 Sobic004G035100--Sobic004G128900 Sobic004G035100--Sobic003G339200 Sobic004G035100--Sobic004G344600 Sobic004G035100--Sobic007G065600 Sobic004G035100--Sobic006G191500 Sobic007G098800--Sobic003G180600 Sobic007G098800--Sobic007G095300 Sobic003G232001 Sobic003G232001 Sobic007G098800--Sobic003G232001 Sobic001G419600 Sobic001G419600 Sobic007G098800--Sobic001G419600 Sobic002G296500 Sobic002G296500 Sobic007G098800--Sobic002G296500 Sobic002G171101 Sobic002G171101 Sobic007G098800--Sobic002G171101 Sobic010G163400 Sobic010G163400 Sobic007G098800--Sobic010G163400 Sobic007G098800--Sobic003G234600 Sobic004G003600 Sobic004G003600 Sobic007G098800--Sobic004G003600 Sobic002G390100 Sobic002G390100 Sobic002G196600--Sobic002G390100 Sobic006G093100 Sobic006G093100 Sobic002G196600--Sobic006G093100 Sobic002G196600--Sobic010G231300 Sobic003G042900 Sobic003G042900 Sobic002G196600--Sobic003G042900 Sobic002G219300 Sobic002G219300 Sobic002G196600--Sobic002G219300 Sobic002G196600--Sobic001G073300 Sobic001G244700 Sobic001G244700 Sobic002G196600--Sobic001G244700 Sobic002G404800 Sobic002G404800 Sobic002G196600--Sobic002G404800 Sobic002G196600--Sobic006G161500 Sobic002G109200 Sobic002G109200 Sobic009G018600--Sobic002G109200 Sobic008G115700 Sobic008G115700 Sobic009G018600--Sobic008G115700 Sobic009G018600--Sobic007G090451 Sobic009G018600--Sobic003G340300 Sobic009G018600--Sobic010G208750 Sobic005G073800 Sobic005G073800 Sobic009G018600--Sobic005G073800 Sobic008G012150 Sobic008G012150 Sobic009G018600--Sobic008G012150 Sobic008G012100 Sobic008G012100 Sobic009G018600--Sobic008G012100 Sobic009G018600--Sobic009G246400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.