Gene annotation
Transcriptome id Sobic.007G114500.1
Synonym Sb07g018840, UGE5
Functional annotation NAD dependent epimerase/dehydratase family protein, putative, expressed
UniProt C5YKH3
Pfam PF01073
Panther DB PTHR10366:SF457 PTHR10366
NCBI CDD -
KEGG Orthology K01784; galE, UDP-glucose 4-epimerase
Gene Ontology GO:0003854; 3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0006694steroid biosynthetic process GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor


Orthologs (automatic annotation)
TAIR AT4G10960 : UDP-D-glucose/UDP-D-galactose 4-epimerase 5
RAP-DB (Rice) LOC_Os08g28730.1 : NAD dependent epimerase/dehydratase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a018614 , Zm00025a046491 , Zm00025a013742 , Zm00025a002461 , Zm00025a006148
Brachypodium KQJ98153 , KQJ89839
Barley HORVU5Hr1G055920.6 , HORVU5Hr1G055920.7 , HORVU5Hr1G055920.4 , HORVU5Hr1G055920.2 , HORVU5Hr1G055920.3 , HORVU5Hr1G055920.1 , HORVU5Hr1G055920.8
Wheat TraesCS5A02G183100 , TraesCS5D02G188200 , TraesCS5B02G181300
Populus PNT53546 , PNT53545 , PNT53544


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G394100 expressed protein -
2 Sobic.009G251100 TTL1, putative, expressed K09527: DnaJ homolog subfamily C member 7
3 Sobic.008G039800 rhoGAP domain containing protein, expressed -
4 Sobic.009G167800 protein kinase family protein, putative, expressed -
5 Sobic.002G313600 src homology-3 domain protein 3, putative, expressed -
6 Sobic.003G017500 TTL1, putative, expressed -
7 Sobic.010G217100 ubiquitin-conjugating enzyme, putative, expressed K10583: UBE2S, ubiquitin-conjugating enzyme E2 S
8 Sobic.001G512000 cyclin-dependent kinase inhibitor, putative, expressed -
9 Sobic.002G161700 Myb-like DNA-binding domain containing protein, putative, expressed -
10 Sobic.008G178800 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed K00549: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
11 Sobic.001G334900 X8 domain containing protein, expressed -
12 Sobic.009G063400 "CESA1-like or CESA10-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@CESA1 - cellulose synthase, expressed K10999: cellulose synthase A
13 Sobic.003G400600 BHLH transcription factor, putative, expressed -
14 Sobic.009G232200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fasciclin domain containing protein, expressed -
15 Sobic.001G484000 hydrolase, alpha/beta fold family protein, putative, expressed -
16 Sobic.010G123300 expressed protein -
17 Sobic.010G138500 lectin protein kinase family protein, putative, expressed -
18 Sobic.009G125900 expressed protein -
19 Sobic.004G051300 galactosyltransferase, putative, expressed -
20 Sobic.008G191500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@N-acetylglucosaminyltransferase, putative, expressed -


Gene co-expression network
sample Sobic007G114500 Sobic007G114500 Sobic003G394100 Sobic003G394100 Sobic007G114500--Sobic003G394100 Sobic009G251100 Sobic009G251100 Sobic007G114500--Sobic009G251100 Sobic008G039800 Sobic008G039800 Sobic007G114500--Sobic008G039800 Sobic009G167800 Sobic009G167800 Sobic007G114500--Sobic009G167800 Sobic002G313600 Sobic002G313600 Sobic007G114500--Sobic002G313600 Sobic003G017500 Sobic003G017500 Sobic007G114500--Sobic003G017500 Sobic010G217100 Sobic010G217100 Sobic007G114500--Sobic010G217100 Sobic001G512000 Sobic001G512000 Sobic007G114500--Sobic001G512000 Sobic002G161700 Sobic002G161700 Sobic007G114500--Sobic002G161700 Sobic001G103000 Sobic001G103000 Sobic003G394100--Sobic001G103000 Sobic002G347400 Sobic002G347400 Sobic003G394100--Sobic002G347400 Sobic007G173000 Sobic007G173000 Sobic003G394100--Sobic007G173000 Sobic003G394100--Sobic007G114500 Sobic003G442300 Sobic003G442300 Sobic003G394100--Sobic003G442300 Sobic005G204700 Sobic005G204700 Sobic003G394100--Sobic005G204700 Sobic003G394100--Sobic008G039800 Sobic001G146000 Sobic001G146000 Sobic003G394100--Sobic001G146000 Sobic002G166400 Sobic002G166400 Sobic003G394100--Sobic002G166400 Sobic004G296300 Sobic004G296300 Sobic009G251100--Sobic004G296300 Sobic010G120300 Sobic010G120300 Sobic009G251100--Sobic010G120300 Sobic010G096100 Sobic010G096100 Sobic009G251100--Sobic010G096100 Sobic003G419600 Sobic003G419600 Sobic009G251100--Sobic003G419600 Sobic001G196000 Sobic001G196000 Sobic009G251100--Sobic001G196000 Sobic001G073150 Sobic001G073150 Sobic009G251100--Sobic001G073150 Sobic004G243800 Sobic004G243800 Sobic009G251100--Sobic004G243800 Sobic001G437500 Sobic001G437500 Sobic009G251100--Sobic001G437500 Sobic009G063400 Sobic009G063400 Sobic009G251100--Sobic009G063400 Sobic003G277200 Sobic003G277200 Sobic008G039800--Sobic003G277200 Sobic001G037400 Sobic001G037400 Sobic008G039800--Sobic001G037400 Sobic009G242501 Sobic009G242501 Sobic008G039800--Sobic009G242501 Sobic001G285200 Sobic001G285200 Sobic008G039800--Sobic001G285200 Sobic010G216600 Sobic010G216600 Sobic008G039800--Sobic010G216600 Sobic009G211800 Sobic009G211800 Sobic008G039800--Sobic009G211800 Sobic008G096200 Sobic008G096200 Sobic008G039800--Sobic008G096200 Sobic003G013000 Sobic003G013000 Sobic008G039800--Sobic003G013000 Sobic008G039800--Sobic001G196000 Sobic008G191500 Sobic008G191500 Sobic009G167800--Sobic008G191500 Sobic010G054100 Sobic010G054100 Sobic009G167800--Sobic010G054100 Sobic001G159800 Sobic001G159800 Sobic009G167800--Sobic001G159800 Sobic010G216000 Sobic010G216000 Sobic009G167800--Sobic010G216000 Sobic009G167800--Sobic007G114500 Sobic009G167800--Sobic003G017500 Sobic004G270800 Sobic004G270800 Sobic009G167800--Sobic004G270800 Sobic004G249100 Sobic004G249100 Sobic009G167800--Sobic004G249100 Sobic009G167800--Sobic009G063400 Sobic001G116000 Sobic001G116000 Sobic002G313600--Sobic001G116000 Sobic007G044400 Sobic007G044400 Sobic002G313600--Sobic007G044400 Sobic001G196100 Sobic001G196100 Sobic002G313600--Sobic001G196100 Sobic003G134800 Sobic003G134800 Sobic002G313600--Sobic003G134800 Sobic001G026600 Sobic001G026600 Sobic002G313600--Sobic001G026600 Sobic001G108400 Sobic001G108400 Sobic002G313600--Sobic001G108400 Sobic001G530800 Sobic001G530800 Sobic002G313600--Sobic001G530800 Sobic001G281900 Sobic001G281900 Sobic002G313600--Sobic001G281900 Sobic002G313600--Sobic003G017500 Sobic002G383100 Sobic002G383100 Sobic003G017500--Sobic002G383100 Sobic001G051300 Sobic001G051300 Sobic003G017500--Sobic001G051300 Sobic007G130900 Sobic007G130900 Sobic003G017500--Sobic007G130900 Sobic003G017500--Sobic001G437500 Sobic007G139500 Sobic007G139500 Sobic003G017500--Sobic007G139500 Sobic009G073400 Sobic009G073400 Sobic003G017500--Sobic009G073400 Sobic009G206500 Sobic009G206500 Sobic003G017500--Sobic009G206500 Sobic003G017500--Sobic001G159800 Sobic003G410600 Sobic003G410600 Sobic003G017500--Sobic003G410600 Sobic006G104100 Sobic006G104100 Sobic010G217100--Sobic006G104100 Sobic010G144900 Sobic010G144900 Sobic010G217100--Sobic010G144900 Sobic009G124200 Sobic009G124200 Sobic010G217100--Sobic009G124200 Sobic010G138500 Sobic010G138500 Sobic010G217100--Sobic010G138500 Sobic003G003700 Sobic003G003700 Sobic010G217100--Sobic003G003700 Sobic009G224600 Sobic009G224600 Sobic010G217100--Sobic009G224600 Sobic001G468500 Sobic001G468500 Sobic010G217100--Sobic001G468500 Sobic001G226100 Sobic001G226100 Sobic010G217100--Sobic001G226100 Sobic006G191700 Sobic006G191700 Sobic010G217100--Sobic006G191700 Sobic009G229300 Sobic009G229300 Sobic001G512000--Sobic009G229300 Sobic004G051300 Sobic004G051300 Sobic001G512000--Sobic004G051300 Sobic001G112700 Sobic001G112700 Sobic001G512000--Sobic001G112700 Sobic005G017300 Sobic005G017300 Sobic001G512000--Sobic005G017300 Sobic004G272200 Sobic004G272200 Sobic001G512000--Sobic004G272200 Sobic001G230100 Sobic001G230100 Sobic001G512000--Sobic001G230100 Sobic009G026200 Sobic009G026200 Sobic001G512000--Sobic009G026200 Sobic004G134100 Sobic004G134100 Sobic001G512000--Sobic004G134100 Sobic001G007600 Sobic001G007600 Sobic001G512000--Sobic001G007600 Sobic002G393200 Sobic002G393200 Sobic002G161700--Sobic002G393200 Sobic002G161700--Sobic009G206500 Sobic004G308100 Sobic004G308100 Sobic002G161700--Sobic004G308100 Sobic007G166800 Sobic007G166800 Sobic002G161700--Sobic007G166800 Sobic009G151700 Sobic009G151700 Sobic002G161700--Sobic009G151700 Sobic009G061000 Sobic009G061000 Sobic002G161700--Sobic009G061000 Sobic002G161700--Sobic003G013000 Sobic002G319200 Sobic002G319200 Sobic002G161700--Sobic002G319200 Sobic006G254500 Sobic006G254500 Sobic002G161700--Sobic006G254500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.