Gene annotation
Transcriptome id Sobic.007G170400.1
Synonym CHS, Sb07g024260, ATCHS, TT4
Functional annotation chalcone synthase, putative, expressed
UniProt C5YN83
Pfam PF08541 PF08545
Panther DB PTHR11877 PTHR11877:SF19
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups GO:0008610lipid biosynthetic process GO:0006633fatty acid biosynthetic process GO:00043153-oxoacyl-[acyl-carrier-protein] synthase activity


Orthologs (automatic annotation)
TAIR AT5G13930 : Chalcone and stilbene synthase family protein
RAP-DB (Rice) LOC_Os10g07616.1 : chalcone synthase, putative, expressed
MaizeGDB (Corn) Zm00025a033583
Brachypodium KQJ89844 , KQK13828
Barley HORVU5Hr1G093950.3 , HORVU2Hr1G005220.3 , HORVU2Hr1G005220.2 , HORVU2Hr1G005220.5 , HORVU2Hr1G005220.4 , HORVU7Hr1G020920.4 , HORVU7Hr1G020920.5 , HORVU7Hr1G020920.6 , HORVU7Hr1G020920.7 , HORVU7Hr1G020920.1 , HORVU7Hr1G020920.2 , HORVU7Hr1G020920.3 , HORVU2Hr1G004690.1 , HORVU2Hr1G004690.3 , HORVU2Hr1G004690.2 , HORVU2Hr1G004690.4 , HORVU7Hr1G024480.2 , HORVU7Hr1G024480.1 , HORVU7Hr1G009190.1 , HORVU6Hr1G003020.3 , HORVU6Hr1G003020.2 , HORVU6Hr1G074060.1 , HORVU6Hr1G074060.2 , HORVU5Hr1G093950.4 , HORVU5Hr1G093950.1 , HORVU5Hr1G093950.2 , HORVU2Hr1G116390.1 , HORVU2Hr1G116390.2 , HORVU2Hr1G116390.3 , HORVU2Hr1G116390.4
Wheat TraesCS2B02G048400 , TraesCS6A02G298400 , TraesCS6D02G278200 , TraesCS7D02G089300 , TraesCS2B02G558400 , TraesCS2B02G558400 , TraesCS4D02G351300 , TraesCS2A02G025600 , TraesCS2A02G035300 , TraesCS4A02G437900 , TraesCS4B02G357100 , TraesCS6D02G018500 , TraesCS2D02G030600 , TraesCS5A02G526900 , TraesCS7A02G093900 , TraesCS6B02G327900 , TraesCS6A02G015500 , TraesCS6B02G022500 , TraesCS4A02G292500 , TraesCS5A02G379500 , TraesCS5B02G383300 , TraesCS2A02G527700 , TraesCS2B02G041300 , TraesCS2A02G527700 , TraesCS2D02G530600 , TraesCS5A02G379400
Populus -


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cDNA sequences
Sobic.007G170400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G351300 - -
2 Sobic.003G077200 - -
3 Sobic.001G262000 zinc finger, C3HC4 type domain containing protein, expressed -
4 Sobic.009G090800 CRAL/TRIO domain containing protein, expressed -
5 Sobic.005G210100 uncharacterized glycosyltransferase, putative, expressed K06611: stachyose synthetase
6 Sobic.007G090442 - -
7 Sobic.006G180900 ZOS4-11 - C2H2 zinc finger protein, expressed -
8 Sobic.007G181600 dehydrogenase, putative, expressed K00008: SORD, L-iditol 2-dehydrogenase
9 Sobic.001G310500 strictosidine synthase, putative, expressed -
10 Sobic.001G341001 - -
11 Sobic.004G285400 ZOS2-15 - C2H2 zinc finger protein, expressed -
12 Sobic.005G085400 DNA-directed RNA polymerase subunit beta, putative, expressed -
13 Sobic.001G166401 - -
14 Sobic.005G129000 - -
15 Sobic.010G095300 - -
16 Sobic.006G038350 - -
17 Sobic.002G282900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pyridoxal-dependent decarboxylase protein, putative, expressed K01581: E4.1.1.17, ODC1, speC, ornithine decarboxylase
18 Sobic.008G087100 DNA-binding storekeeper protein-related, putative, expressed -
19 Sobic.007G176500 - -
20 Sobic.004G329800 BHLH transcription factor, putative, expressed -


Gene co-expression network
sample Sobic007G170400 Sobic007G170400 Sobic001G351300 Sobic001G351300 Sobic007G170400--Sobic001G351300 Sobic003G077200 Sobic003G077200 Sobic007G170400--Sobic003G077200 Sobic001G262000 Sobic001G262000 Sobic007G170400--Sobic001G262000 Sobic009G090800 Sobic009G090800 Sobic007G170400--Sobic009G090800 Sobic005G210100 Sobic005G210100 Sobic007G170400--Sobic005G210100 Sobic007G090442 Sobic007G090442 Sobic007G170400--Sobic007G090442 Sobic006G180900 Sobic006G180900 Sobic007G170400--Sobic006G180900 Sobic007G181600 Sobic007G181600 Sobic007G170400--Sobic007G181600 Sobic001G310500 Sobic001G310500 Sobic007G170400--Sobic001G310500 Sobic001G351300--Sobic001G262000 Sobic001G369300 Sobic001G369300 Sobic001G351300--Sobic001G369300 Sobic009G041100 Sobic009G041100 Sobic001G351300--Sobic009G041100 Sobic001G381250 Sobic001G381250 Sobic001G351300--Sobic001G381250 Sobic006G038350 Sobic006G038350 Sobic003G077200--Sobic006G038350 Sobic005G085400 Sobic005G085400 Sobic003G077200--Sobic005G085400 Sobic003G077200--Sobic007G170400 Sobic003G442200 Sobic003G442200 Sobic003G077200--Sobic003G442200 Sobic001G341001 Sobic001G341001 Sobic003G077200--Sobic001G341001 Sobic003G077200--Sobic001G351300 Sobic003G077200--Sobic001G262000 Sobic004G042400 Sobic004G042400 Sobic003G077200--Sobic004G042400 Sobic003G125266 Sobic003G125266 Sobic003G077200--Sobic003G125266 Sobic001G262000--Sobic001G351300 Sobic001G262000--Sobic001G369300 Sobic001G262000--Sobic009G041100 Sobic001G262000--Sobic001G381250 Sobic009G090800--Sobic007G170400 Sobic003G045501 Sobic003G045501 Sobic009G090800--Sobic003G045501 Sobic004G064000 Sobic004G064000 Sobic009G090800--Sobic004G064000 Sobic009G090800--Sobic001G341001 Sobic003G022200 Sobic003G022200 Sobic009G090800--Sobic003G022200 Sobic001G041400 Sobic001G041400 Sobic009G090800--Sobic001G041400 Sobic004G329800 Sobic004G329800 Sobic009G090800--Sobic004G329800 Sobic007G078300 Sobic007G078300 Sobic009G090800--Sobic007G078300 Sobic009G090800--Sobic005G085400 Sobic005G210100--Sobic001G310500 Sobic005G210100--Sobic001G351300 Sobic005G210100--Sobic001G262000 Sobic005G210100--Sobic007G090442 Sobic005G210100--Sobic007G170400 Sobic008G087100 Sobic008G087100 Sobic005G210100--Sobic008G087100 Sobic004G003000 Sobic004G003000 Sobic005G210100--Sobic004G003000 Sobic005G210100--Sobic009G041100 Sobic005G193260 Sobic005G193260 Sobic005G210100--Sobic005G193260 Sobic007G090442--Sobic009G041100 Sobic005G110000 Sobic005G110000 Sobic007G090442--Sobic005G110000 Sobic002G362400 Sobic002G362400 Sobic007G090442--Sobic002G362400 Sobic005G087666 Sobic005G087666 Sobic007G090442--Sobic005G087666 Sobic010G237100 Sobic010G237100 Sobic007G090442--Sobic010G237100 Sobic010G044600 Sobic010G044600 Sobic007G090442--Sobic010G044600 Sobic009G010000 Sobic009G010000 Sobic007G090442--Sobic009G010000 Sobic003G392500 Sobic003G392500 Sobic007G090442--Sobic003G392500 Sobic005G199300 Sobic005G199300 Sobic007G090442--Sobic005G199300 Sobic004G285400 Sobic004G285400 Sobic006G180900--Sobic004G285400 Sobic006G180900--Sobic007G181600 Sobic006G180900--Sobic001G310500 Sobic008G013000 Sobic008G013000 Sobic006G180900--Sobic008G013000 Sobic006G245000 Sobic006G245000 Sobic006G180900--Sobic006G245000 Sobic002G282900 Sobic002G282900 Sobic006G180900--Sobic002G282900 Sobic006G180900--Sobic007G170400 Sobic005G129000 Sobic005G129000 Sobic006G180900--Sobic005G129000 Sobic004G158300 Sobic004G158300 Sobic006G180900--Sobic004G158300 Sobic004G298700 Sobic004G298700 Sobic007G181600--Sobic004G298700 Sobic007G181600--Sobic007G090442 Sobic007G181600--Sobic006G180900 Sobic007G181600--Sobic001G310500 Sobic007G181600--Sobic008G013000 Sobic010G095300 Sobic010G095300 Sobic007G181600--Sobic010G095300 Sobic003G111400 Sobic003G111400 Sobic007G181600--Sobic003G111400 Sobic001G037800 Sobic001G037800 Sobic007G181600--Sobic001G037800 Sobic001G011800 Sobic001G011800 Sobic007G181600--Sobic001G011800 Sobic001G310500--Sobic006G180900 Sobic001G310500--Sobic007G181600 Sobic001G310500--Sobic005G210100 Sobic001G310500--Sobic001G351300 Sobic001G310500--Sobic001G262000 Sobic001G310500--Sobic005G129000 Sobic001G310500--Sobic002G282900 Sobic001G310500--Sobic007G090442 Sobic001G310500--Sobic010G095300
Octagon: transcription factors


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