Gene annotation
Transcriptome id Sobic.008G019400.1
Synonym Sb08g001710
Functional annotation Up-reguralion under heat (PubMedID : 24916767)
MATE efflux family protein, putative, expressed
UniProt C5YQQ9
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF102
NCBI CDD KOG1347; Uncharacterized membrane protein, predicted efflux pump
KEGG Orthology K03327; TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT1G33110 : MATE efflux family protein
RAP-DB (Rice) LOC_Os11g03240.1 : MATE efflux family protein, putative, expressed
MaizeGDB (Corn) Zm00025a053728 , Zm00025a013140
Brachypodium KQJ92476 , KQJ87623
Barley HORVU4Hr1G024240.1 , HORVU5Hr1G045360.9 , HORVU5Hr1G045360.8 , HORVU5Hr1G045360.4 , HORVU5Hr1G045360.7 , HORVU5Hr1G045360.6 , HORVU5Hr1G045360.3 , HORVU5Hr1G086830.2 , HORVU5Hr1G086830.3 , HORVU5Hr1G086830.4 , HORVU5Hr1G086830.6 , HORVU5Hr1G086830.7 , HORVU5Hr1G086830.8 , HORVU5Hr1G045360.11 , HORVU5Hr1G045360.13 , HORVU5Hr1G045360.12 , HORVU5Hr1G045360.15 , HORVU5Hr1G045360.16 , HORVU5Hr1G045360.14
Wheat TraesCS5D02G355300 , TraesCS5D02G150100 , TraesCS5B02G350500 , TraesCS5B02G350400 , TraesCS4D02G123800 , TraesCS5A02G349100 , TraesCS5A02G142000 , TraesCS5A02G349000 , TraesCS5D02G355500 , TraesCS4B02G128600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G052100 early light-induced protein, chloroplast precursor, putative, expressed -
2 Sobic.003G339200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.004G214800 receptor-like protein kinase 5 precursor, putative, expressed -
4 Sobic.010G271800 leucine zipper protein-like, putative, expressed -
5 Sobic.001G181100 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@SCARECROW, putative, expressed -
6 Sobic.001G112900 expressed protein -
7 Sobic.003G326000 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed -
8 Sobic.002G338800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dynein light chain type 1 domain containing protein, expressed K10418: dynein light chain LC8-type
9 Sobic.002G052000 early light-induced protein, chloroplast precursor, putative, expressed -
10 Sobic.009G246400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@polyprenyl synthetase, putative, expressed K05356: SPS, all-trans-nonaprenyl-diphosphate synthase
11 Sobic.006G020300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
12 Sobic.005G002400 expressed protein -
13 Sobic.003G154400 OsSCP3 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
14 Sobic.004G344600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
15 Sobic.010G113200 UDP-glucoronosyl and UDP-glucosyl transferase, putative, expressed -
16 Sobic.002G109200 - -
17 Sobic.006G068900 expressed protein -
18 Sobic.003G175800 - -
19 Sobic.003G304300 expressed protein -
20 Sobic.006G188200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fatty acid hydroxylase, putative, expressed K15746: beta-carotene 3-hydroxylase


Gene co-expression network
sample Sobic008G019400 Sobic008G019400 Sobic002G052100 Sobic002G052100 Sobic008G019400--Sobic002G052100 Sobic003G339200 Sobic003G339200 Sobic008G019400--Sobic003G339200 Sobic004G214800 Sobic004G214800 Sobic008G019400--Sobic004G214800 Sobic010G271800 Sobic010G271800 Sobic008G019400--Sobic010G271800 Sobic001G181100 Sobic001G181100 Sobic008G019400--Sobic001G181100 Sobic001G112900 Sobic001G112900 Sobic008G019400--Sobic001G112900 Sobic003G326000 Sobic003G326000 Sobic008G019400--Sobic003G326000 Sobic002G338800 Sobic002G338800 Sobic008G019400--Sobic002G338800 Sobic002G052000 Sobic002G052000 Sobic008G019400--Sobic002G052000 Sobic002G052100--Sobic002G052000 Sobic002G052100--Sobic001G181100 Sobic002G052100--Sobic004G214800 Sobic005G002400 Sobic005G002400 Sobic002G052100--Sobic005G002400 Sobic003G175800 Sobic003G175800 Sobic002G052100--Sobic003G175800 Sobic003G154400 Sobic003G154400 Sobic002G052100--Sobic003G154400 Sobic006G020300 Sobic006G020300 Sobic002G052100--Sobic006G020300 Sobic002G052100--Sobic003G326000 Sobic002G052100--Sobic010G271800 Sobic003G339200--Sobic001G112900 Sobic004G344600 Sobic004G344600 Sobic003G339200--Sobic004G344600 Sobic002G161400 Sobic002G161400 Sobic003G339200--Sobic002G161400 Sobic003G304300 Sobic003G304300 Sobic003G339200--Sobic003G304300 Sobic010G113200 Sobic010G113200 Sobic003G339200--Sobic010G113200 Sobic009G246400 Sobic009G246400 Sobic003G339200--Sobic009G246400 Sobic003G162400 Sobic003G162400 Sobic003G339200--Sobic003G162400 Sobic006G191500 Sobic006G191500 Sobic003G339200--Sobic006G191500 Sobic010G104700 Sobic010G104700 Sobic003G339200--Sobic010G104700 Sobic004G214800--Sobic003G326000 Sobic004G214800--Sobic002G052100 Sobic004G214800--Sobic001G181100 Sobic004G214800--Sobic010G271800 Sobic004G214800--Sobic005G002400 Sobic004G214800--Sobic001G112900 Sobic004G214800--Sobic006G020300 Sobic004G214800--Sobic003G339200 Sobic004G214800--Sobic003G175800 Sobic010G271800--Sobic003G326000 Sobic010G271800--Sobic001G181100 Sobic010G271800--Sobic005G002400 Sobic010G271800--Sobic002G052100 Sobic010G271800--Sobic004G214800 Sobic008G002400 Sobic008G002400 Sobic010G271800--Sobic008G002400 Sobic006G154800 Sobic006G154800 Sobic010G271800--Sobic006G154800 Sobic004G190100 Sobic004G190100 Sobic010G271800--Sobic004G190100 Sobic010G271800--Sobic001G112900 Sobic001G181100--Sobic002G052100 Sobic001G181100--Sobic005G002400 Sobic001G181100--Sobic003G326000 Sobic001G181100--Sobic010G271800 Sobic001G181100--Sobic004G214800 Sobic001G181100--Sobic002G052000 Sobic001G181100--Sobic003G175800 Sobic001G181100--Sobic008G002400 Sobic001G181100--Sobic006G020300 Sobic001G112900--Sobic003G339200 Sobic001G112900--Sobic004G344600 Sobic001G112900--Sobic003G304300 Sobic001G112900--Sobic002G161400 Sobic001G112900--Sobic010G113200 Sobic001G112900--Sobic005G002400 Sobic001G112900--Sobic006G191500 Sobic001G112900--Sobic003G162400 Sobic001G112900--Sobic010G104700 Sobic003G326000--Sobic010G271800 Sobic003G326000--Sobic005G002400 Sobic003G326000--Sobic004G214800 Sobic003G326000--Sobic008G002400 Sobic003G326000--Sobic001G181100 Sobic003G326000--Sobic002G052100 Sobic003G326000--Sobic004G190100 Sobic003G326000--Sobic001G112900 Sobic003G326000--Sobic006G154800 Sobic002G338800--Sobic001G112900 Sobic002G338800--Sobic003G339200 Sobic002G338800--Sobic003G304300 Sobic009G245000 Sobic009G245000 Sobic002G338800--Sobic009G245000 Sobic003G186800 Sobic003G186800 Sobic002G338800--Sobic003G186800 Sobic002G338800--Sobic005G002400 Sobic007G016600 Sobic007G016600 Sobic002G338800--Sobic007G016600 Sobic002G338800--Sobic003G154400 Sobic002G338800--Sobic004G214800 Sobic002G052000--Sobic002G052100 Sobic002G052000--Sobic001G181100 Sobic003G188200 Sobic003G188200 Sobic002G052000--Sobic003G188200 Sobic002G052000--Sobic003G175800 Sobic002G052000--Sobic003G154400 Sobic002G052000--Sobic004G214800 Sobic002G052000--Sobic005G002400 Sobic007G163433 Sobic007G163433 Sobic002G052000--Sobic007G163433 Sobic002G052000--Sobic010G271800
Octagon: transcription factors


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