Gene annotation
Transcriptome id Sobic.006G188200.2,Sobic.006G188200.1
Synonym BCH1, BETA-OHASE1, B1, Sb06g026190, chy1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
fatty acid hydroxylase, putative, expressed
UniProt A0A1Z5REM3 , C5YEG7
Pfam PF04116
Panther DB PTHR31899 PTHR31899:SF1
NCBI CDD -
KEGG Orthology K15746; beta-carotene 3-hydroxylase
Gene Ontology GO:0016491; oxidoreductase activity GO:0006633fatty acid biosynthetic process GO:0005506iron ion binding


Orthologs (automatic annotation)
TAIR AT5G52570 : beta-hydroxylase 1,beta-carotene hydroxylase 2
RAP-DB (Rice) LOC_Os04g48880.1 : fatty acid hydroxylase, putative, expressed
MaizeGDB (Corn) Zm00025a000333 , Zm00025a054964 , Zm00025a056732 , Zm00025a053497 , Zm00025a010113
Brachypodium KQK23901 , KQJ84170
Barley HORVU4Hr1G083400.10 , HORVU2Hr1G094160.8 , HORVU2Hr1G094160.9 , HORVU2Hr1G094160.6 , HORVU2Hr1G094160.7 , HORVU2Hr1G094160.4 , HORVU2Hr1G094160.5 , HORVU2Hr1G094160.2 , HORVU2Hr1G094160.3 , HORVU2Hr1G094160.1 , HORVU2Hr1G094160.14 , HORVU2Hr1G094160.15 , HORVU2Hr1G094160.16 , HORVU2Hr1G094160.17 , HORVU2Hr1G094160.10 , HORVU2Hr1G094160.11 , HORVU2Hr1G094160.12 , HORVU2Hr1G094160.13 , HORVU4Hr1G083400.7 , HORVU4Hr1G083400.6 , HORVU4Hr1G083400.5 , HORVU4Hr1G083400.4 , HORVU4Hr1G083400.3 , HORVU4Hr1G083400.2 , HORVU4Hr1G083400.1 , HORVU4Hr1G083400.9 , HORVU4Hr1G083400.8
Wheat TraesCS2B02G414500 , TraesCS4B02G318000 , TraesCS2A02G396200 , TraesCS2D02G393900 , TraesCS4D02G314400 , TraesCS5A02G494200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G029600 -(PubMedID : 26465154)@expressed protein -
2 Sobic.009G250400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA polymerase sigma factor, putative, expressed K03093: RNA polymerase sigma factor
3 Sobic.001G485100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.003G304300 expressed protein -
5 Sobic.007G065600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carotenoid synthesis regulator CarF, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
6 Sobic.004G344600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
7 Sobic.004G267700 hydrolase, alpha/beta fold family domain containing protein, expressed -
8 Sobic.003G186800 transporter, major facilitator family, putative, expressed -
9 Sobic.001G112900 expressed protein -
10 Sobic.010G101000 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
11 Sobic.006G191500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
12 Sobic.003G380200 SNARE associated Golgi protein, putative, expressed -
13 Sobic.002G161400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
14 Sobic.003G339200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.010G104700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@caleosin related protein, putative, expressed K17991: peroxygenase
16 Sobic.009G133700 expressed protein -
17 Sobic.003G428600 amidohydrolase, putative, expressed K07047: N-substituted formamide deformylase
18 Sobic.009G246400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@polyprenyl synthetase, putative, expressed K05356: SPS, all-trans-nonaprenyl-diphosphate synthase
19 Sobic.009G225600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
20 Sobic.008G180800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carotenoid biosynthesi(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed K02291: 15-cis-phytoene synthase


Gene co-expression network
sample Sobic006G188200 Sobic006G188200 Sobic001G029600 Sobic001G029600 Sobic006G188200--Sobic001G029600 Sobic009G250400 Sobic009G250400 Sobic006G188200--Sobic009G250400 Sobic001G485100 Sobic001G485100 Sobic006G188200--Sobic001G485100 Sobic003G304300 Sobic003G304300 Sobic006G188200--Sobic003G304300 Sobic007G065600 Sobic007G065600 Sobic006G188200--Sobic007G065600 Sobic004G344600 Sobic004G344600 Sobic006G188200--Sobic004G344600 Sobic004G267700 Sobic004G267700 Sobic006G188200--Sobic004G267700 Sobic003G186800 Sobic003G186800 Sobic006G188200--Sobic003G186800 Sobic001G112900 Sobic001G112900 Sobic006G188200--Sobic001G112900 Sobic006G140500 Sobic006G140500 Sobic001G029600--Sobic006G140500 Sobic004G202200 Sobic004G202200 Sobic001G029600--Sobic004G202200 Sobic001G029600--Sobic004G267700 Sobic009G119300 Sobic009G119300 Sobic001G029600--Sobic009G119300 Sobic004G268400 Sobic004G268400 Sobic001G029600--Sobic004G268400 Sobic008G088821 Sobic008G088821 Sobic001G029600--Sobic008G088821 Sobic003G380200 Sobic003G380200 Sobic001G029600--Sobic003G380200 Sobic009G133700 Sobic009G133700 Sobic001G029600--Sobic009G133700 Sobic001G015200 Sobic001G015200 Sobic001G029600--Sobic001G015200 Sobic003G228300 Sobic003G228300 Sobic009G250400--Sobic003G228300 Sobic003G341300 Sobic003G341300 Sobic009G250400--Sobic003G341300 Sobic009G250400--Sobic001G485100 Sobic009G250400--Sobic009G133700 Sobic004G128900 Sobic004G128900 Sobic009G250400--Sobic004G128900 Sobic001G180200 Sobic001G180200 Sobic009G250400--Sobic001G180200 Sobic006G191500 Sobic006G191500 Sobic009G250400--Sobic006G191500 Sobic006G161500 Sobic006G161500 Sobic009G250400--Sobic006G161500 Sobic009G250400--Sobic007G065600 Sobic001G485100--Sobic006G191500 Sobic002G161400 Sobic002G161400 Sobic001G485100--Sobic002G161400 Sobic001G485100--Sobic003G380200 Sobic001G485100--Sobic003G186800 Sobic001G046000 Sobic001G046000 Sobic001G485100--Sobic001G046000 Sobic001G331600 Sobic001G331600 Sobic001G485100--Sobic001G331600 Sobic001G485100--Sobic003G228300 Sobic009G225600 Sobic009G225600 Sobic001G485100--Sobic009G225600 Sobic001G485100--Sobic004G344600 Sobic003G304300--Sobic004G267700 Sobic003G304300--Sobic006G191500 Sobic002G351200 Sobic002G351200 Sobic003G304300--Sobic002G351200 Sobic003G304300--Sobic002G161400 Sobic003G304300--Sobic004G344600 Sobic003G304300--Sobic001G112900 Sobic003G304300--Sobic003G186800 Sobic003G304300--Sobic003G380200 Sobic003G304300--Sobic004G268400 Sobic007G065600--Sobic001G485100 Sobic007G065600--Sobic004G344600 Sobic007G065600--Sobic002G161400 Sobic007G065600--Sobic006G191500 Sobic007G065600--Sobic004G128900 Sobic007G065600--Sobic006G161500 Sobic007G065600--Sobic003G228300 Sobic007G065600--Sobic003G380200 Sobic007G065600--Sobic003G186800 Sobic004G344600--Sobic002G161400 Sobic004G344600--Sobic001G112900 Sobic003G339200 Sobic003G339200 Sobic004G344600--Sobic003G339200 Sobic004G344600--Sobic003G304300 Sobic004G344600--Sobic006G191500 Sobic010G104700 Sobic010G104700 Sobic004G344600--Sobic010G104700 Sobic004G344600--Sobic001G485100 Sobic004G344600--Sobic004G128900 Sobic009G246400 Sobic009G246400 Sobic004G344600--Sobic009G246400 Sobic004G267700--Sobic004G268400 Sobic004G267700--Sobic003G304300 Sobic010G101000 Sobic010G101000 Sobic004G267700--Sobic010G101000 Sobic007G016600 Sobic007G016600 Sobic004G267700--Sobic007G016600 Sobic004G267700--Sobic003G380200 Sobic004G267700--Sobic002G351200 Sobic001G018000 Sobic001G018000 Sobic004G267700--Sobic001G018000 Sobic004G267700--Sobic003G186800 Sobic010G100900 Sobic010G100900 Sobic004G267700--Sobic010G100900 Sobic003G186800--Sobic003G380200 Sobic003G186800--Sobic003G304300 Sobic003G186800--Sobic009G225600 Sobic003G186800--Sobic006G191500 Sobic003G186800--Sobic001G485100 Sobic003G186800--Sobic010G101000 Sobic003G186800--Sobic004G268400 Sobic002G047400 Sobic002G047400 Sobic003G186800--Sobic002G047400 Sobic003G186800--Sobic004G267700 Sobic001G112900--Sobic003G339200 Sobic001G112900--Sobic004G344600 Sobic001G112900--Sobic003G304300 Sobic001G112900--Sobic002G161400 Sobic010G113200 Sobic010G113200 Sobic001G112900--Sobic010G113200 Sobic005G002400 Sobic005G002400 Sobic001G112900--Sobic005G002400 Sobic001G112900--Sobic006G191500 Sobic003G162400 Sobic003G162400 Sobic001G112900--Sobic003G162400 Sobic001G112900--Sobic010G104700
Octagon: transcription factors


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