Gene annotation
Transcriptome id Sobic.008G089700.10,Sobic.008G089700.9
Synonym
Functional annotation expressed protein
UniProt A0A1Z5R5L3 , A0A1Z5R5M2
Pfam PF07039
Panther DB PTHR21539
NCBI CDD KOG3038; Histone acetyltransferase SAGA associated factor SGF29
KEGG Orthology K11364; SAGA-associated factor 29
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G27460 : SGF29 tudor-like domain
RAP-DB (Rice) LOC_Os12g19350.1 : expressed protein
MaizeGDB (Corn) Zm00025a054147
Brachypodium KQJ86868
Barley -
Wheat TraesCS5A02G119000 , TraesCS5A02G119000
Populus -


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cDNA sequences
Sobic.008G089700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G278700 expressed protein -
2 Sobic.002G378200 adaptor complexes medium subunit family domain containing protein, expressed K12402: AP-4 complex subunit mu-1
3 Sobic.007G184500 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
4 Sobic.009G226400 dynamin family protein, putative, expressed -
5 Sobic.001G142100 WD domain, G-beta repeat domain containing protein, expressed K04536: guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
6 Sobic.004G350100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
7 Sobic.004G283000 nucleic acid binding protein, putative, expressed -
8 Sobic.006G252700 protein kinase domain containing protein, expressed -
9 Sobic.002G300700 peptidyl-prolyl cis-trans isomerase, putative, expressed -
10 Sobic.006G195700 WD domain, G-beta repeat domain containing protein, expressed K14962: WDR82, SWD2, COMPASS component SWD2
11 Sobic.003G114700 NAK-like ser/thr protein kinase, putative, expressed -
12 Sobic.004G007300 expressed protein -
13 Sobic.006G114500 per1-like family protein, putative, expressed -
14 Sobic.001G371200 SAC3/GANP family protein, putative, expressed -
15 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
16 Sobic.001G360200 novel plant SNARE 11, putative, expressed K08494: novel plant SNARE
17 Sobic.001G143500 pleckstrin homology domain-containing protein, putative, expressed -
18 Sobic.008G112800 pre-mRNA-processing factor 6, putative, expressed K12855: PRPF6, pre-mRNA-processing factor 6
19 Sobic.005G216300 RNA recognition motif containing protein, expressed K12837: splicing factor U2AF 65 kDa subunit
20 Sobic.004G002400 expressed protein -


Gene co-expression network
sample Sobic008G089700 Sobic008G089700 Sobic006G278700 Sobic006G278700 Sobic008G089700--Sobic006G278700 Sobic002G378200 Sobic002G378200 Sobic008G089700--Sobic002G378200 Sobic007G184500 Sobic007G184500 Sobic008G089700--Sobic007G184500 Sobic009G226400 Sobic009G226400 Sobic008G089700--Sobic009G226400 Sobic001G142100 Sobic001G142100 Sobic008G089700--Sobic001G142100 Sobic004G350100 Sobic004G350100 Sobic008G089700--Sobic004G350100 Sobic004G283000 Sobic004G283000 Sobic008G089700--Sobic004G283000 Sobic006G252700 Sobic006G252700 Sobic008G089700--Sobic006G252700 Sobic002G300700 Sobic002G300700 Sobic008G089700--Sobic002G300700 Sobic006G278700--Sobic002G378200 Sobic006G278700--Sobic006G252700 Sobic007G205000 Sobic007G205000 Sobic006G278700--Sobic007G205000 Sobic001G360200 Sobic001G360200 Sobic006G278700--Sobic001G360200 Sobic003G401100 Sobic003G401100 Sobic006G278700--Sobic003G401100 Sobic001G143500 Sobic001G143500 Sobic006G278700--Sobic001G143500 Sobic001G226000 Sobic001G226000 Sobic006G278700--Sobic001G226000 Sobic007G118200 Sobic007G118200 Sobic006G278700--Sobic007G118200 Sobic008G004400 Sobic008G004400 Sobic006G278700--Sobic008G004400 Sobic002G378200--Sobic006G278700 Sobic004G345700 Sobic004G345700 Sobic002G378200--Sobic004G345700 Sobic002G084300 Sobic002G084300 Sobic002G378200--Sobic002G084300 Sobic004G007300 Sobic004G007300 Sobic002G378200--Sobic004G007300 Sobic002G378200--Sobic004G283000 Sobic001G056200 Sobic001G056200 Sobic002G378200--Sobic001G056200 Sobic002G132300 Sobic002G132300 Sobic002G378200--Sobic002G132300 Sobic001G028400 Sobic001G028400 Sobic002G378200--Sobic001G028400 Sobic003G187200 Sobic003G187200 Sobic002G378200--Sobic003G187200 Sobic007G184500--Sobic001G360200 Sobic001G033500 Sobic001G033500 Sobic007G184500--Sobic001G033500 Sobic007G077400 Sobic007G077400 Sobic007G184500--Sobic007G077400 Sobic006G044600 Sobic006G044600 Sobic007G184500--Sobic006G044600 Sobic009G058500 Sobic009G058500 Sobic007G184500--Sobic009G058500 Sobic007G184500--Sobic006G278700 Sobic004G353000 Sobic004G353000 Sobic007G184500--Sobic004G353000 Sobic004G178200 Sobic004G178200 Sobic007G184500--Sobic004G178200 Sobic010G073100 Sobic010G073100 Sobic007G184500--Sobic010G073100 Sobic001G023100 Sobic001G023100 Sobic009G226400--Sobic001G023100 Sobic003G270600 Sobic003G270600 Sobic009G226400--Sobic003G270600 SobicK004100 SobicK004100 Sobic009G226400--SobicK004100 Sobic001G369000 Sobic001G369000 Sobic009G226400--Sobic001G369000 Sobic002G029300 Sobic002G029300 Sobic009G226400--Sobic002G029300 Sobic001G335900 Sobic001G335900 Sobic009G226400--Sobic001G335900 Sobic006G056200 Sobic006G056200 Sobic009G226400--Sobic006G056200 Sobic004G039600 Sobic004G039600 Sobic009G226400--Sobic004G039600 Sobic001G420800 Sobic001G420800 Sobic009G226400--Sobic001G420800 Sobic005G004200 Sobic005G004200 Sobic001G142100--Sobic005G004200 Sobic008G131000 Sobic008G131000 Sobic001G142100--Sobic008G131000 Sobic003G187500 Sobic003G187500 Sobic001G142100--Sobic003G187500 Sobic005G216300 Sobic005G216300 Sobic001G142100--Sobic005G216300 Sobic001G142100--Sobic003G401100 Sobic001G142100--Sobic006G252700 Sobic003G439800 Sobic003G439800 Sobic001G142100--Sobic003G439800 Sobic006G114500 Sobic006G114500 Sobic001G142100--Sobic006G114500 Sobic003G114700 Sobic003G114700 Sobic001G142100--Sobic003G114700 Sobic004G350100--Sobic007G118200 Sobic010G033400 Sobic010G033400 Sobic004G350100--Sobic010G033400 Sobic004G350100--Sobic006G252700 Sobic003G081000 Sobic003G081000 Sobic004G350100--Sobic003G081000 Sobic004G350100--Sobic004G007300 Sobic009G056800 Sobic009G056800 Sobic004G350100--Sobic009G056800 Sobic004G350100--Sobic004G283000 Sobic004G350100--Sobic001G143500 Sobic004G350100--Sobic001G028400 Sobic003G248500 Sobic003G248500 Sobic004G283000--Sobic003G248500 Sobic002G388200 Sobic002G388200 Sobic004G283000--Sobic002G388200 Sobic004G283000--Sobic004G007300 Sobic004G283000--Sobic004G350100 Sobic008G174300 Sobic008G174300 Sobic004G283000--Sobic008G174300 Sobic004G283000--Sobic007G118200 Sobic009G257800 Sobic009G257800 Sobic004G283000--Sobic009G257800 Sobic006G173100 Sobic006G173100 Sobic004G283000--Sobic006G173100 Sobic002G157300 Sobic002G157300 Sobic004G283000--Sobic002G157300 Sobic006G252700--Sobic003G081000 Sobic001G466700 Sobic001G466700 Sobic006G252700--Sobic001G466700 Sobic006G252700--Sobic004G350100 Sobic006G252700--Sobic001G143500 Sobic006G252700--Sobic007G118200 Sobic006G252700--Sobic006G278700 Sobic006G252700--Sobic003G401100 Sobic006G252700--Sobic003G439800 Sobic002G034600 Sobic002G034600 Sobic006G252700--Sobic002G034600 Sobic002G300700--Sobic001G360200 Sobic002G300700--Sobic006G252700 Sobic003G005200 Sobic003G005200 Sobic002G300700--Sobic003G005200 Sobic003G422900 Sobic003G422900 Sobic002G300700--Sobic003G422900 Sobic009G164000 Sobic009G164000 Sobic002G300700--Sobic009G164000 Sobic004G066200 Sobic004G066200 Sobic002G300700--Sobic004G066200 Sobic002G300700--Sobic006G278700 Sobic002G300700--Sobic004G039600 Sobic003G352200 Sobic003G352200 Sobic002G300700--Sobic003G352200
Octagon: transcription factors


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