Gene annotation
Transcriptome id Sobic.008G150400.1
Synonym Sb08g020020
Functional annotation WD-40 repeat family protein, putative, expressed
UniProt A0A1Z5R6U4
Pfam PF00400
Panther DB PTHR22844 PTHR22844:SF145
NCBI CDD KOG0295; WD40 repeat-containing protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G49450 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os12g40260.1 : WD-40 repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a004513 , Zm00025a016849 , Zm00025a025223 , Zm00025a007383
Brachypodium KQK13305 , KQJ86023
Barley HORVU5Hr1G017260.2 , HORVU5Hr1G017260.1
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.008G150400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G173300 spotted leaf 11, putative, expressed -
2 Sobic.009G167000 expressed protein -
3 Sobic.004G244300 formin-like protein 3 precursor, putative, expressed -
4 Sobic.010G105500 - -
5 Sobic.006G194600 FERONIA receptor-like kinase, putative, expressed -
6 Sobic.008G040900 amino acid permease family protein, putative, expressed K03294: basic amino acid/polyamine antiporter, APA family
7 Sobic.002G021300 bZIP transcription factor domain containing protein, expressed -
8 Sobic.006G203000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
9 Sobic.002G037400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed K09840: 9-cis-epoxycarotenoid dioxygenase
10 Sobic.009G076500 expressed protein -
11 Sobic.009G076700 expressed protein -
12 Sobic.003G083000 glycosyl hydrolase family 10 protein, putative, expressed -
13 Sobic.007G073750 - -
14 Sobic.008G058900 amino acid transporter, putative, expressed -
15 Sobic.005G016900 CRP11 - Cysteine-rich family protein precursor, expressed -
16 Sobic.009G028300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transcription factor TF2, putative, expressed -
17 Sobic.007G143100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- -
18 Sobic.004G281200 chitin-inducible gibberellin-responsive protein 2, putative, expressed -
19 Sobic.007G143200 Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- -
20 Sobic.001G210250 - -


Gene co-expression network
sample Sobic008G150400 Sobic008G150400 Sobic009G173300 Sobic009G173300 Sobic008G150400--Sobic009G173300 Sobic009G167000 Sobic009G167000 Sobic008G150400--Sobic009G167000 Sobic004G244300 Sobic004G244300 Sobic008G150400--Sobic004G244300 Sobic010G105500 Sobic010G105500 Sobic008G150400--Sobic010G105500 Sobic006G194600 Sobic006G194600 Sobic008G150400--Sobic006G194600 Sobic008G040900 Sobic008G040900 Sobic008G150400--Sobic008G040900 Sobic002G021300 Sobic002G021300 Sobic008G150400--Sobic002G021300 Sobic006G203000 Sobic006G203000 Sobic008G150400--Sobic006G203000 Sobic002G037400 Sobic002G037400 Sobic008G150400--Sobic002G037400 Sobic009G173300--Sobic008G150400 Sobic006G216500 Sobic006G216500 Sobic009G173300--Sobic006G216500 Sobic001G020200 Sobic001G020200 Sobic009G173300--Sobic001G020200 Sobic006G184400 Sobic006G184400 Sobic009G173300--Sobic006G184400 Sobic004G305000 Sobic004G305000 Sobic009G173300--Sobic004G305000 Sobic009G028300 Sobic009G028300 Sobic009G173300--Sobic009G028300 Sobic004G338200 Sobic004G338200 Sobic009G173300--Sobic004G338200 Sobic002G278400 Sobic002G278400 Sobic009G173300--Sobic002G278400 Sobic010G086400 Sobic010G086400 Sobic009G173300--Sobic010G086400 Sobic009G167000--Sobic002G021300 Sobic009G167000--Sobic004G244300 Sobic009G167000--Sobic006G194600 Sobic004G244100 Sobic004G244100 Sobic009G167000--Sobic004G244100 Sobic004G281200 Sobic004G281200 Sobic009G167000--Sobic004G281200 Sobic002G217100 Sobic002G217100 Sobic009G167000--Sobic002G217100 Sobic009G076500 Sobic009G076500 Sobic009G167000--Sobic009G076500 Sobic008G058900 Sobic008G058900 Sobic009G167000--Sobic008G058900 Sobic008G059000 Sobic008G059000 Sobic009G167000--Sobic008G059000 Sobic004G244300--Sobic004G281200 Sobic004G244300--Sobic006G194600 Sobic010G016500 Sobic010G016500 Sobic004G244300--Sobic010G016500 Sobic004G244300--Sobic006G203000 Sobic004G244300--Sobic004G244100 Sobic004G244300--Sobic009G167000 Sobic004G244300--Sobic002G217100 Sobic004G244300--Sobic002G037400 Sobic001G075101 Sobic001G075101 Sobic004G244300--Sobic001G075101 Sobic010G247500 Sobic010G247500 Sobic010G105500--Sobic010G247500 Sobic003G424500 Sobic003G424500 Sobic010G105500--Sobic003G424500 Sobic010G105500--Sobic009G076500 Sobic010G238400 Sobic010G238400 Sobic010G105500--Sobic010G238400 Sobic010G105500--Sobic009G167000 Sobic010G105500--Sobic002G021300 Sobic003G146000 Sobic003G146000 Sobic010G105500--Sobic003G146000 Sobic010G105500--Sobic006G203000 Sobic010G201200 Sobic010G201200 Sobic010G105500--Sobic010G201200 Sobic006G194600--Sobic004G244300 Sobic006G026400 Sobic006G026400 Sobic006G194600--Sobic006G026400 Sobic006G194600--Sobic004G244100 Sobic006G194600--Sobic010G016500 Sobic006G194600--Sobic004G281200 Sobic006G194600--Sobic006G203000 Sobic006G194600--Sobic009G167000 Sobic006G194600--Sobic002G037400 Sobic006G194600--Sobic008G059000 Sobic008G040900--Sobic006G194600 Sobic008G040900--Sobic001G075101 Sobic008G040900--Sobic006G203000 Sobic008G040900--Sobic002G037400 Sobic007G169600 Sobic007G169600 Sobic008G040900--Sobic007G169600 Sobic003G083000 Sobic003G083000 Sobic008G040900--Sobic003G083000 Sobic008G040900--Sobic006G026400 Sobic005G016900 Sobic005G016900 Sobic008G040900--Sobic005G016900 Sobic007G143100 Sobic007G143100 Sobic008G040900--Sobic007G143100 Sobic002G021300--Sobic009G167000 Sobic004G300300 Sobic004G300300 Sobic002G021300--Sobic004G300300 Sobic002G021300--Sobic004G281200 Sobic002G021300--Sobic009G076500 Sobic002G021300--Sobic008G059000 Sobic002G021300--Sobic002G037400 Sobic002G021300--Sobic006G026400 Sobic002G021300--Sobic006G194600 Sobic002G021300--Sobic004G244100 Sobic006G203000--Sobic002G037400 Sobic006G203000--Sobic001G075101 Sobic006G203000--Sobic007G169600 Sobic002G331450 Sobic002G331450 Sobic006G203000--Sobic002G331450 Sobic006G203000--Sobic003G083000 Sobic002G325600 Sobic002G325600 Sobic006G203000--Sobic002G325600 Sobic006G203000--Sobic006G026400 Sobic002G023900 Sobic002G023900 Sobic006G203000--Sobic002G023900 Sobic002G110200 Sobic002G110200 Sobic006G203000--Sobic002G110200 Sobic002G037400--Sobic006G203000 Sobic002G037400--Sobic007G169600 Sobic002G037400--Sobic001G075101 Sobic002G037400--Sobic003G083000 Sobic002G037400--Sobic002G331450 Sobic002G037400--Sobic006G026400 Sobic009G076700 Sobic009G076700 Sobic002G037400--Sobic009G076700 Sobic002G037400--Sobic007G143100 Sobic002G037400--Sobic005G016900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.