Gene annotation
Transcriptome id Sobic.009G028300.3,Sobic.009G028300.2,Sobic.009G028300.1
Synonym Sb09g002370
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
transcription factor TF2, putative, expressed
UniProt A0A1Z5R0L5 , C5YZ56
Pfam PF13837
Panther DB PTHR10032 PTHR10032:SF195
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006351; transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT5G01380 : Homeodomain-like superfamily protein
RAP-DB (Rice) LOC_Os05g03740.1 : transcription factor TF2, putative, expressed
MaizeGDB (Corn) Zm00025a040715
Brachypodium KQK07886 , KQK07887
Barley HORVU1Hr1G014950.2 , HORVU1Hr1G014950.3 , HORVU1Hr1G014950.1 , HORVU1Hr1G014950.4
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G363200 ZOS1-17 - C2H2 zinc finger protein, expressed -
2 Sobic.010G105500 - -
3 Sobic.003G431000 spotted leaf 11, putative, expressed -
4 Sobic.009G167000 expressed protein -
5 Sobic.005G139700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@respiratory burst oxidase, putative, expressed K13447: respiratory burst oxidase
6 Sobic.004G297200 DUF630/DUF632 domains containing protein, putative, expressed -
7 Sobic.001G189700 DNAJ heat shock N-terminal domain-containing protein, putative, expressed -
8 Sobic.006G184400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
9 Sobic.010G200700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.004G244300 formin-like protein 3 precursor, putative, expressed -
11 Sobic.003G268700 STE_MEKK_ste11_MAP3K.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
12 Sobic.010G175200 low-affinity cation transporter, putative, expressed -
13 Sobic.010G076600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Serine/threonine-protein kinase RIPK(PubMedID : 31721651)@tyrosine protein kinase domain containing protein, putative, expressed -
14 Sobic.001G403600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF538 domain containing protein, putative, expressed -
15 Sobic.002G217100 tyrosine protein kinase domain containing protein, putative, expressed -
16 Sobic.009G030600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@TKL_IRAK_DUF26-lf.3 - DUF26 kinases have homology to DUF26 containing loci, expressed -
17 Sobic.008G036000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
18 Sobic.002G188700 armadillo/beta-catenin repeat family protein, putative, expressed -
19 Sobic.004G268700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K09843: (+)-abscisic acid 8'-hydroxylase
20 Sobic.003G424500 Putative uncharacterized protein(PubMedID : 24906815)@expressed protein -


Gene co-expression network
sample Sobic009G028300 Sobic009G028300 Sobic003G363200 Sobic003G363200 Sobic009G028300--Sobic003G363200 Sobic010G105500 Sobic010G105500 Sobic009G028300--Sobic010G105500 Sobic003G431000 Sobic003G431000 Sobic009G028300--Sobic003G431000 Sobic009G167000 Sobic009G167000 Sobic009G028300--Sobic009G167000 Sobic005G139700 Sobic005G139700 Sobic009G028300--Sobic005G139700 Sobic004G297200 Sobic004G297200 Sobic009G028300--Sobic004G297200 Sobic001G189700 Sobic001G189700 Sobic009G028300--Sobic001G189700 Sobic006G184400 Sobic006G184400 Sobic009G028300--Sobic006G184400 Sobic010G200700 Sobic010G200700 Sobic009G028300--Sobic010G200700 Sobic003G363200--Sobic005G139700 Sobic003G363200--Sobic010G200700 Sobic003G363200--Sobic003G431000 Sobic002G219200 Sobic002G219200 Sobic003G363200--Sobic002G219200 Sobic001G028000 Sobic001G028000 Sobic003G363200--Sobic001G028000 Sobic001G290400 Sobic001G290400 Sobic003G363200--Sobic001G290400 Sobic003G363200--Sobic004G297200 Sobic006G078400 Sobic006G078400 Sobic003G363200--Sobic006G078400 Sobic010G245800 Sobic010G245800 Sobic003G363200--Sobic010G245800 Sobic010G247500 Sobic010G247500 Sobic010G105500--Sobic010G247500 Sobic003G424500 Sobic003G424500 Sobic010G105500--Sobic003G424500 Sobic009G076500 Sobic009G076500 Sobic010G105500--Sobic009G076500 Sobic010G238400 Sobic010G238400 Sobic010G105500--Sobic010G238400 Sobic010G105500--Sobic009G167000 Sobic002G021300 Sobic002G021300 Sobic010G105500--Sobic002G021300 Sobic003G146000 Sobic003G146000 Sobic010G105500--Sobic003G146000 Sobic006G203000 Sobic006G203000 Sobic010G105500--Sobic006G203000 Sobic010G201200 Sobic010G201200 Sobic010G105500--Sobic010G201200 Sobic003G431000--Sobic003G363200 Sobic003G431000--Sobic009G167000 Sobic003G431000--Sobic005G139700 Sobic003G039400 Sobic003G039400 Sobic003G431000--Sobic003G039400 Sobic002G197600 Sobic002G197600 Sobic003G431000--Sobic002G197600 Sobic001G403600 Sobic001G403600 Sobic003G431000--Sobic001G403600 Sobic003G431000--Sobic002G021300 Sobic004G281200 Sobic004G281200 Sobic003G431000--Sobic004G281200 Sobic008G036000 Sobic008G036000 Sobic003G431000--Sobic008G036000 Sobic009G167000--Sobic002G021300 Sobic004G244300 Sobic004G244300 Sobic009G167000--Sobic004G244300 Sobic006G194600 Sobic006G194600 Sobic009G167000--Sobic006G194600 Sobic004G244100 Sobic004G244100 Sobic009G167000--Sobic004G244100 Sobic009G167000--Sobic004G281200 Sobic002G217100 Sobic002G217100 Sobic009G167000--Sobic002G217100 Sobic009G167000--Sobic009G076500 Sobic008G058900 Sobic008G058900 Sobic009G167000--Sobic008G058900 Sobic008G059000 Sobic008G059000 Sobic009G167000--Sobic008G059000 Sobic005G139700--Sobic003G363200 Sobic005G139700--Sobic010G245800 Sobic005G139700--Sobic001G290400 Sobic005G139700--Sobic002G197600 Sobic005G139700--Sobic010G200700 Sobic005G139700--Sobic003G431000 Sobic001G051800 Sobic001G051800 Sobic005G139700--Sobic001G051800 Sobic005G139700--Sobic001G028000 Sobic005G139700--Sobic001G403600 Sobic004G297200--Sobic010G200700 Sobic010G175200 Sobic010G175200 Sobic004G297200--Sobic010G175200 Sobic009G247300 Sobic009G247300 Sobic004G297200--Sobic009G247300 Sobic004G042600 Sobic004G042600 Sobic004G297200--Sobic004G042600 Sobic003G268700 Sobic003G268700 Sobic004G297200--Sobic003G268700 Sobic003G012800 Sobic003G012800 Sobic004G297200--Sobic003G012800 Sobic004G297200--Sobic003G363200 Sobic009G066800 Sobic009G066800 Sobic004G297200--Sobic009G066800 Sobic009G044400 Sobic009G044400 Sobic004G297200--Sobic009G044400 Sobic004G053200 Sobic004G053200 Sobic001G189700--Sobic004G053200 Sobic003G338900 Sobic003G338900 Sobic001G189700--Sobic003G338900 Sobic002G080000 Sobic002G080000 Sobic001G189700--Sobic002G080000 Sobic004G280800 Sobic004G280800 Sobic001G189700--Sobic004G280800 Sobic001G189700--Sobic001G290400 Sobic001G189700--Sobic001G403600 Sobic001G189700--Sobic003G012800 Sobic001G189700--Sobic009G044400 Sobic001G189700--Sobic005G139700 Sobic004G305000 Sobic004G305000 Sobic006G184400--Sobic004G305000 Sobic010G076600 Sobic010G076600 Sobic006G184400--Sobic010G076600 Sobic006G184400--Sobic002G217100 Sobic006G210300 Sobic006G210300 Sobic006G184400--Sobic006G210300 Sobic001G398500 Sobic001G398500 Sobic006G184400--Sobic001G398500 Sobic001G192800 Sobic001G192800 Sobic006G184400--Sobic001G192800 Sobic003G361100 Sobic003G361100 Sobic006G184400--Sobic003G361100 Sobic009G071800 Sobic009G071800 Sobic006G184400--Sobic009G071800 Sobic003G353800 Sobic003G353800 Sobic006G184400--Sobic003G353800 Sobic010G200700--Sobic004G297200 Sobic006G089300 Sobic006G089300 Sobic010G200700--Sobic006G089300 Sobic010G200700--Sobic003G012800 Sobic006G228300 Sobic006G228300 Sobic010G200700--Sobic006G228300 Sobic003G373000 Sobic003G373000 Sobic010G200700--Sobic003G373000 Sobic010G200700--Sobic009G066800 Sobic002G036100 Sobic002G036100 Sobic010G200700--Sobic002G036100 Sobic010G200700--Sobic010G245800 Sobic002G131800 Sobic002G131800 Sobic010G200700--Sobic002G131800
Octagon: transcription factors


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