Gene annotation
Transcriptome id Sobic.009G173300.2
Synonym Sb09g023380
Functional annotation spotted leaf 11, putative, expressed
UniProt A0A1Z5R339
Pfam PF04564 PF00514
Panther DB PTHR23315:SF136 PTHR23315
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0004842; ubiquitin-protein transferase activity GO:0016567protein ubiquitination GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G01830 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os05g39930.1 : spotted leaf 11, putative, expressed
MaizeGDB (Corn) Zm00025a043984 , Zm00025a039761 , Zm00025a048581 , Zm00025a027039
Brachypodium KQK10372 , KQK05759
Barley HORVU1Hr1G069990.1 , HORVU1Hr1G069990.2 , HORVU3Hr1G081300.1 , HORVU3Hr1G081300.2
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G150400 WD-40 repeat family protein, putative, expressed -
2 Sobic.006G216500 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.001G020200 ZOS3-24 - C2H2 zinc finger protein, expressed -
4 Sobic.006G184400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
5 Sobic.004G305000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
6 Sobic.009G028300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transcription factor TF2, putative, expressed -
7 Sobic.004G338200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsWAK24 - OsWAK receptor-like protein kinase, expressed -
8 Sobic.002G278400 - -
9 Sobic.010G086400 zinc finger, C3HC4 type domain containing protein, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
10 Sobic.002G217100 tyrosine protein kinase domain containing protein, putative, expressed -
11 Sobic.001G398500 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@long cell-linked locus protein, putative, expressed -
12 Sobic.003G353800 avr9/Cf-9 rapidly elicited protein, putative, expressed -
13 Sobic.010G272000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@leucine zipper protein-like, putative, expressed -
14 Sobic.001G035000 ZOS3-22 - C2H2 zinc finger protein, expressed -
15 Sobic.003G268700 STE_MEKK_ste11_MAP3K.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
16 Sobic.003G361100 hs1, putative, expressed -
17 Sobic.006G210300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
18 Sobic.009G217600 STE_MEKK_ste11_MAP3K.19 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
19 Sobic.001G441100 immediate-early fungal elicitor protein CMPG1, putative, expressed -
20 Sobic.006G273800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8


Gene co-expression network
sample Sobic009G173300 Sobic009G173300 Sobic008G150400 Sobic008G150400 Sobic009G173300--Sobic008G150400 Sobic006G216500 Sobic006G216500 Sobic009G173300--Sobic006G216500 Sobic001G020200 Sobic001G020200 Sobic009G173300--Sobic001G020200 Sobic006G184400 Sobic006G184400 Sobic009G173300--Sobic006G184400 Sobic004G305000 Sobic004G305000 Sobic009G173300--Sobic004G305000 Sobic009G028300 Sobic009G028300 Sobic009G173300--Sobic009G028300 Sobic004G338200 Sobic004G338200 Sobic009G173300--Sobic004G338200 Sobic002G278400 Sobic002G278400 Sobic009G173300--Sobic002G278400 Sobic010G086400 Sobic010G086400 Sobic009G173300--Sobic010G086400 Sobic008G150400--Sobic009G173300 Sobic009G167000 Sobic009G167000 Sobic008G150400--Sobic009G167000 Sobic004G244300 Sobic004G244300 Sobic008G150400--Sobic004G244300 Sobic010G105500 Sobic010G105500 Sobic008G150400--Sobic010G105500 Sobic006G194600 Sobic006G194600 Sobic008G150400--Sobic006G194600 Sobic008G040900 Sobic008G040900 Sobic008G150400--Sobic008G040900 Sobic002G021300 Sobic002G021300 Sobic008G150400--Sobic002G021300 Sobic006G203000 Sobic006G203000 Sobic008G150400--Sobic006G203000 Sobic002G037400 Sobic002G037400 Sobic008G150400--Sobic002G037400 Sobic004G283300 Sobic004G283300 Sobic006G216500--Sobic004G283300 Sobic001G081600 Sobic001G081600 Sobic006G216500--Sobic001G081600 Sobic004G281200 Sobic004G281200 Sobic006G216500--Sobic004G281200 Sobic010G272000 Sobic010G272000 Sobic006G216500--Sobic010G272000 Sobic006G184800 Sobic006G184800 Sobic006G216500--Sobic006G184800 Sobic001G476400 Sobic001G476400 Sobic006G216500--Sobic001G476400 Sobic010G016500 Sobic010G016500 Sobic006G216500--Sobic010G016500 Sobic002G217100 Sobic002G217100 Sobic006G216500--Sobic002G217100 Sobic002G344700 Sobic002G344700 Sobic006G216500--Sobic002G344700 Sobic001G020200--Sobic004G338200 Sobic004G216900 Sobic004G216900 Sobic001G020200--Sobic004G216900 Sobic007G122500 Sobic007G122500 Sobic001G020200--Sobic007G122500 Sobic009G161700 Sobic009G161700 Sobic001G020200--Sobic009G161700 Sobic009G182500 Sobic009G182500 Sobic001G020200--Sobic009G182500 Sobic001G020200--Sobic009G173300 Sobic003G361100 Sobic003G361100 Sobic001G020200--Sobic003G361100 Sobic003G353800 Sobic003G353800 Sobic001G020200--Sobic003G353800 Sobic003G268700 Sobic003G268700 Sobic001G020200--Sobic003G268700 Sobic006G184400--Sobic004G305000 Sobic010G076600 Sobic010G076600 Sobic006G184400--Sobic010G076600 Sobic006G184400--Sobic002G217100 Sobic006G210300 Sobic006G210300 Sobic006G184400--Sobic006G210300 Sobic001G398500 Sobic001G398500 Sobic006G184400--Sobic001G398500 Sobic001G192800 Sobic001G192800 Sobic006G184400--Sobic001G192800 Sobic006G184400--Sobic003G361100 Sobic009G071800 Sobic009G071800 Sobic006G184400--Sobic009G071800 Sobic006G184400--Sobic003G353800 Sobic004G305000--Sobic006G184400 Sobic004G305000--Sobic001G192800 Sobic006G273800 Sobic006G273800 Sobic004G305000--Sobic006G273800 Sobic007G077001 Sobic007G077001 Sobic004G305000--Sobic007G077001 Sobic004G305000--Sobic002G217100 Sobic004G305000--Sobic003G353800 Sobic004G305000--Sobic006G210300 Sobic004G305000--Sobic010G076600 Sobic009G217500 Sobic009G217500 Sobic004G305000--Sobic009G217500 Sobic003G363200 Sobic003G363200 Sobic009G028300--Sobic003G363200 Sobic009G028300--Sobic010G105500 Sobic003G431000 Sobic003G431000 Sobic009G028300--Sobic003G431000 Sobic009G028300--Sobic009G167000 Sobic005G139700 Sobic005G139700 Sobic009G028300--Sobic005G139700 Sobic004G297200 Sobic004G297200 Sobic009G028300--Sobic004G297200 Sobic001G189700 Sobic001G189700 Sobic009G028300--Sobic001G189700 Sobic009G028300--Sobic006G184400 Sobic010G200700 Sobic010G200700 Sobic009G028300--Sobic010G200700 Sobic004G338200--Sobic001G020200 Sobic004G243000 Sobic004G243000 Sobic004G338200--Sobic004G243000 Sobic003G314200 Sobic003G314200 Sobic004G338200--Sobic003G314200 Sobic007G227500 Sobic007G227500 Sobic004G338200--Sobic007G227500 Sobic008G040800 Sobic008G040800 Sobic004G338200--Sobic008G040800 Sobic004G338200--Sobic009G182500 Sobic003G268800 Sobic003G268800 Sobic004G338200--Sobic003G268800 Sobic004G338200--Sobic009G161700 Sobic006G094800 Sobic006G094800 Sobic004G338200--Sobic006G094800 Sobic003G427400 Sobic003G427400 Sobic002G278400--Sobic003G427400 Sobic002G278400--Sobic009G173300 Sobic002G278400--Sobic006G216500 Sobic001G138700 Sobic001G138700 Sobic002G278400--Sobic001G138700 Sobic001G153700 Sobic001G153700 Sobic002G278400--Sobic001G153700 Sobic001G052500 Sobic001G052500 Sobic002G278400--Sobic001G052500 Sobic007G175200 Sobic007G175200 Sobic002G278400--Sobic007G175200 Sobic003G323100 Sobic003G323100 Sobic002G278400--Sobic003G323100 Sobic002G278400--Sobic004G338200 Sobic010G086400--Sobic006G216500 Sobic003G033500 Sobic003G033500 Sobic010G086400--Sobic003G033500 Sobic007G217300 Sobic007G217300 Sobic010G086400--Sobic007G217300 Sobic010G086400--Sobic009G173300 Sobic003G367350 Sobic003G367350 Sobic010G086400--Sobic003G367350 Sobic006G055600 Sobic006G055600 Sobic010G086400--Sobic006G055600 Sobic003G078600 Sobic003G078600 Sobic010G086400--Sobic003G078600 Sobic004G283201 Sobic004G283201 Sobic010G086400--Sobic004G283201 Sobic006G005600 Sobic006G005600 Sobic010G086400--Sobic006G005600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.