Gene annotation
Transcriptome id Sobic.010G086400.2
Synonym Sb10g007490
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1W0VS23
Pfam PF13639
Panther DB PTHR14155
NCBI CDD -
KEGG Orthology K10664; E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G05200 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os06g11450.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a022172 , Zm00025a042531
Brachypodium -
Barley HORVU7Hr1G036380.2 , HORVU6Hr1G077610.2 , HORVU6Hr1G077610.1
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G216500 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.003G033500 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
3 Sobic.007G217300 hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
4 Sobic.009G173300 spotted leaf 11, putative, expressed -
5 Sobic.003G367350 - -
6 Sobic.006G055600 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
7 Sobic.003G078600 - -
8 Sobic.004G283201 - -
9 Sobic.006G005600 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@heat shock protein, putative, expressed K04079: HSP90A, molecular chaperone HtpG
10 Sobic.003G373150 - -
11 Sobic.006G184800 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@dehydration-responsive element-binding protein, putative, expressed -
12 Sobic.010G114800 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@cyclin-dependent kinase G-1, putative, expressed K08818: cell division cycle 2-like
13 Sobic.004G045800 phytosulfokine receptor precursor, putative, expressed -
14 Sobic.001G153700 zinc finger, C3HC4 type domain containing protein, expressed -
15 Sobic.005G087800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
16 Sobic.007G006000 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
17 Sobic.001G092600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
18 Sobic.003G078501 - -
19 Sobic.002G182900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.002G089700 cytochrome P450, putative, expressed -


Gene co-expression network
sample Sobic010G086400 Sobic010G086400 Sobic006G216500 Sobic006G216500 Sobic010G086400--Sobic006G216500 Sobic003G033500 Sobic003G033500 Sobic010G086400--Sobic003G033500 Sobic007G217300 Sobic007G217300 Sobic010G086400--Sobic007G217300 Sobic009G173300 Sobic009G173300 Sobic010G086400--Sobic009G173300 Sobic003G367350 Sobic003G367350 Sobic010G086400--Sobic003G367350 Sobic006G055600 Sobic006G055600 Sobic010G086400--Sobic006G055600 Sobic003G078600 Sobic003G078600 Sobic010G086400--Sobic003G078600 Sobic004G283201 Sobic004G283201 Sobic010G086400--Sobic004G283201 Sobic006G005600 Sobic006G005600 Sobic010G086400--Sobic006G005600 Sobic004G283300 Sobic004G283300 Sobic006G216500--Sobic004G283300 Sobic001G081600 Sobic001G081600 Sobic006G216500--Sobic001G081600 Sobic004G281200 Sobic004G281200 Sobic006G216500--Sobic004G281200 Sobic010G272000 Sobic010G272000 Sobic006G216500--Sobic010G272000 Sobic006G184800 Sobic006G184800 Sobic006G216500--Sobic006G184800 Sobic001G476400 Sobic001G476400 Sobic006G216500--Sobic001G476400 Sobic010G016500 Sobic010G016500 Sobic006G216500--Sobic010G016500 Sobic002G217100 Sobic002G217100 Sobic006G216500--Sobic002G217100 Sobic002G344700 Sobic002G344700 Sobic006G216500--Sobic002G344700 Sobic009G000700 Sobic009G000700 Sobic003G033500--Sobic009G000700 Sobic004G310600 Sobic004G310600 Sobic003G033500--Sobic004G310600 Sobic001G507500 Sobic001G507500 Sobic003G033500--Sobic001G507500 Sobic003G078501 Sobic003G078501 Sobic003G033500--Sobic003G078501 Sobic010G006700 Sobic010G006700 Sobic003G033500--Sobic010G006700 Sobic003G033500--Sobic007G217300 Sobic004G331300 Sobic004G331300 Sobic003G033500--Sobic004G331300 Sobic004G155150 Sobic004G155150 Sobic003G033500--Sobic004G155150 Sobic003G233900 Sobic003G233900 Sobic003G033500--Sobic003G233900 Sobic001G125100 Sobic001G125100 Sobic007G217300--Sobic001G125100 Sobic007G217300--Sobic003G078501 Sobic007G217300--Sobic010G006700 Sobic001G159850 Sobic001G159850 Sobic007G217300--Sobic001G159850 Sobic008G150400 Sobic008G150400 Sobic009G173300--Sobic008G150400 Sobic009G173300--Sobic006G216500 Sobic001G020200 Sobic001G020200 Sobic009G173300--Sobic001G020200 Sobic006G184400 Sobic006G184400 Sobic009G173300--Sobic006G184400 Sobic004G305000 Sobic004G305000 Sobic009G173300--Sobic004G305000 Sobic009G028300 Sobic009G028300 Sobic009G173300--Sobic009G028300 Sobic004G338200 Sobic004G338200 Sobic009G173300--Sobic004G338200 Sobic002G278400 Sobic002G278400 Sobic009G173300--Sobic002G278400 Sobic009G173300--Sobic010G086400 Sobic003G367350--Sobic003G078501 Sobic003G367350--Sobic001G159850 Sobic006G055600--Sobic004G283201 Sobic006G055600--Sobic006G005600 Sobic001G092600 Sobic001G092600 Sobic006G055600--Sobic001G092600 Sobic003G373150 Sobic003G373150 Sobic006G055600--Sobic003G373150 Sobic006G055600--Sobic006G184800 Sobic009G163900 Sobic009G163900 Sobic006G055600--Sobic009G163900 Sobic004G321000 Sobic004G321000 Sobic006G055600--Sobic004G321000 Sobic004G278200 Sobic004G278200 Sobic006G055600--Sobic004G278200 Sobic009G201500 Sobic009G201500 Sobic006G055600--Sobic009G201500 Sobic007G006000 Sobic007G006000 Sobic003G078600--Sobic007G006000 Sobic003G078600--Sobic003G367350 Sobic009G099050 Sobic009G099050 Sobic003G078600--Sobic009G099050 Sobic003G078600--Sobic003G078501 Sobic003G078600--Sobic007G217300 Sobic010G114800 Sobic010G114800 Sobic003G078600--Sobic010G114800 Sobic002G347800 Sobic002G347800 Sobic003G078600--Sobic002G347800 Sobic003G078600--Sobic001G159850 Sobic004G283201--Sobic006G055600 Sobic004G283201--Sobic006G005600 Sobic004G283201--Sobic003G373150 Sobic004G283201--Sobic006G184800 Sobic004G283201--Sobic001G092600 Sobic004G283201--Sobic004G283300 Sobic004G283201--Sobic010G016500 Sobic004G283201--Sobic001G125100 Sobic004G283201--Sobic009G201500 Sobic006G005600--Sobic006G055600 Sobic006G005600--Sobic001G092600 Sobic006G005600--Sobic004G283201 Sobic006G005600--Sobic009G201500 Sobic006G005600--Sobic009G163900 Sobic006G005600--Sobic006G184800 Sobic006G005600--Sobic003G373150 Sobic006G005600--Sobic004G283300 Sobic006G005600--Sobic004G278200
Octagon: transcription factors


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