Gene annotation
Transcriptome id Sobic.007G006000.1
Synonym CLPC1, HSP93-V, DCA1, CLPC, ATHSP93-V, Sb07g000710
Functional annotation ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed
UniProt C5YLH6
Pfam PF07728 PF10431
Panther DB PTHR11638 PTHR11638:SF90
NCBI CDD -
KEGG Orthology K03696; ATP-dependent Clp protease ATP-binding subunit ClpC
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT5G50920 : CLPC homologue 1
RAP-DB (Rice) LOC_Os12g12850.1 : ATP-dependent Clp protease ATP-binding subunit clpA homolog,chloroplast precursor, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU4Hr1G014120.1 , HORVU4Hr1G014120.2 , HORVU4Hr1G014120.3 , HORVU4Hr1G014120.4 , HORVU4Hr1G014120.5 , HORVU4Hr1G014120.6
Wheat TraesCS4D02G081100 , TraesCS4B02G083000 , TraesCS4A02G232800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G099050 - -
2 Sobic.003G078600 - -
3 Sobic.010G233300 ZOS6-07 - C2H2 zinc finger protein, expressed -
4 Sobic.002G347800 expressed protein -
5 Sobic.010G061300 receptor protein kinase, putative, expressed -
6 Sobic.006G034650 - -
7 Sobic.008G043450 - -
8 Sobic.003G367350 - -
9 Sobic.010G091366 - -
10 Sobic.010G114800 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@cyclin-dependent kinase G-1, putative, expressed K08818: cell division cycle 2-like
11 Sobic.001G153700 zinc finger, C3HC4 type domain containing protein, expressed -
12 Sobic.003G376800 nitroreductase family protein, putative, expressed -
13 Sobic.007G178401 - -
14 Sobic.006G220100 - -
15 Sobic.004G045800 phytosulfokine receptor precursor, putative, expressed -
16 Sobic.009G030701 - -
17 Sobic.006G216500 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.005G110487 - -
19 Sobic.003G078501 - -
20 Sobic.007G217300 hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein


Gene co-expression network
sample Sobic007G006000 Sobic007G006000 Sobic009G099050 Sobic009G099050 Sobic007G006000--Sobic009G099050 Sobic003G078600 Sobic003G078600 Sobic007G006000--Sobic003G078600 Sobic010G233300 Sobic010G233300 Sobic007G006000--Sobic010G233300 Sobic002G347800 Sobic002G347800 Sobic007G006000--Sobic002G347800 Sobic010G061300 Sobic010G061300 Sobic007G006000--Sobic010G061300 Sobic006G034650 Sobic006G034650 Sobic007G006000--Sobic006G034650 Sobic008G043450 Sobic008G043450 Sobic007G006000--Sobic008G043450 Sobic003G367350 Sobic003G367350 Sobic007G006000--Sobic003G367350 Sobic010G091366 Sobic010G091366 Sobic007G006000--Sobic010G091366 Sobic009G099050--Sobic010G233300 Sobic009G099050--Sobic007G006000 Sobic009G099050--Sobic002G347800 Sobic009G099050--Sobic003G078600 Sobic009G030701 Sobic009G030701 Sobic009G099050--Sobic009G030701 Sobic009G099050--Sobic010G091366 Sobic009G066850 Sobic009G066850 Sobic009G099050--Sobic009G066850 Sobic002G168100 Sobic002G168100 Sobic009G099050--Sobic002G168100 Sobic003G051300 Sobic003G051300 Sobic009G099050--Sobic003G051300 Sobic003G078600--Sobic007G006000 Sobic003G078600--Sobic003G367350 Sobic003G078600--Sobic009G099050 Sobic003G078501 Sobic003G078501 Sobic003G078600--Sobic003G078501 Sobic007G217300 Sobic007G217300 Sobic003G078600--Sobic007G217300 Sobic010G114800 Sobic010G114800 Sobic003G078600--Sobic010G114800 Sobic003G078600--Sobic002G347800 Sobic001G159850 Sobic001G159850 Sobic003G078600--Sobic001G159850 Sobic010G233300--Sobic009G066850 Sobic009G150100 Sobic009G150100 Sobic010G233300--Sobic009G150100 Sobic010G233300--Sobic009G030701 Sobic007G100275 Sobic007G100275 Sobic010G233300--Sobic007G100275 Sobic003G091100 Sobic003G091100 Sobic010G233300--Sobic003G091100 Sobic004G289700 Sobic004G289700 Sobic010G233300--Sobic004G289700 SobicK042700 SobicK042700 Sobic010G233300--SobicK042700 Sobic002G081000 Sobic002G081000 Sobic010G233300--Sobic002G081000 Sobic001G272300 Sobic001G272300 Sobic010G233300--Sobic001G272300 Sobic002G347800--Sobic007G006000 Sobic002G347800--Sobic009G099050 Sobic009G128300 Sobic009G128300 Sobic002G347800--Sobic009G128300 Sobic002G342100 Sobic002G342100 Sobic002G347800--Sobic002G342100 Sobic002G347800--Sobic010G114800 Sobic004G045800 Sobic004G045800 Sobic002G347800--Sobic004G045800 Sobic002G347800--Sobic003G078600 Sobic002G347800--Sobic006G034650 Sobic001G112000 Sobic001G112000 Sobic002G347800--Sobic001G112000 Sobic010G061300--Sobic007G006000 Sobic004G055300 Sobic004G055300 Sobic010G061300--Sobic004G055300 Sobic002G325000 Sobic002G325000 Sobic010G061300--Sobic002G325000 Sobic010G244800 Sobic010G244800 Sobic010G061300--Sobic010G244800 Sobic010G061300--Sobic008G043450 Sobic003G373700 Sobic003G373700 Sobic010G061300--Sobic003G373700 Sobic001G440401 Sobic001G440401 Sobic010G061300--Sobic001G440401 Sobic002G168750 Sobic002G168750 Sobic010G061300--Sobic002G168750 Sobic005G183900 Sobic005G183900 Sobic010G061300--Sobic005G183900 Sobic005G110487 Sobic005G110487 Sobic006G034650--Sobic005G110487 Sobic007G101000 Sobic007G101000 Sobic006G034650--Sobic007G101000 Sobic006G034650--Sobic004G045800 Sobic009G253950 Sobic009G253950 Sobic006G034650--Sobic009G253950 Sobic003G040800 Sobic003G040800 Sobic006G034650--Sobic003G040800 Sobic003G233900 Sobic003G233900 Sobic006G034650--Sobic003G233900 Sobic006G034650--Sobic009G128300 Sobic006G034650--Sobic007G006000 Sobic001G106000 Sobic001G106000 Sobic006G034650--Sobic001G106000 Sobic006G223700 Sobic006G223700 Sobic008G043450--Sobic006G223700 Sobic002G269800 Sobic002G269800 Sobic008G043450--Sobic002G269800 Sobic003G126700 Sobic003G126700 Sobic008G043450--Sobic003G126700 Sobic009G156700 Sobic009G156700 Sobic008G043450--Sobic009G156700 Sobic009G197350 Sobic009G197350 Sobic008G043450--Sobic009G197350 Sobic007G145300 Sobic007G145300 Sobic008G043450--Sobic007G145300 Sobic009G073200 Sobic009G073200 Sobic008G043450--Sobic009G073200 Sobic007G193000 Sobic007G193000 Sobic008G043450--Sobic007G193000 Sobic007G003300 Sobic007G003300 Sobic008G043450--Sobic007G003300 Sobic003G367350--Sobic003G078501 Sobic003G367350--Sobic001G159850 Sobic005G181700 Sobic005G181700 Sobic010G091366--Sobic005G181700 Sobic002G069601 Sobic002G069601 Sobic010G091366--Sobic002G069601 Sobic003G318400 Sobic003G318400 Sobic010G091366--Sobic003G318400 Sobic007G059800 Sobic007G059800 Sobic010G091366--Sobic007G059800 Sobic003G034250 Sobic003G034250 Sobic010G091366--Sobic003G034250 Sobic006G053500 Sobic006G053500 Sobic010G091366--Sobic006G053500 Sobic004G082200 Sobic004G082200 Sobic010G091366--Sobic004G082200 Sobic010G091366--Sobic009G150100 Sobic004G201200 Sobic004G201200 Sobic010G091366--Sobic004G201200
Octagon: transcription factors


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