Gene annotation
Transcriptome id Sobic.009G001000.1
Synonym Sb09g000300
Functional annotation exonuclease, putative, expressed
UniProt C5YXX8
Pfam PF00929
Panther DB PTHR30231 PTHR30231:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G07710 : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
RAP-DB (Rice) LOC_Os05g01200.1 : exonuclease, putative, expressed
MaizeGDB (Corn) Zm00025a038300 , Zm00025a041017
Brachypodium PNT72137
Barley HORVU3Hr1G006310.1 , HORVU3Hr1G006310.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G164900 SWIM zinc finger family protein, expressed -
2 Sobic.006G126400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@exonuclease, putative, expressed -
3 Sobic.010G016800 - -
4 Sobic.004G006966 - -
5 Sobic.004G006966 - -
6 Sobic.004G006966 - -
7 Sobic.004G006966 - -
8 Sobic.004G006966 - -
9 Sobic.002G064700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein 1-deoxy-D-xylulose-5-phosphate synthase (Os)(PubMedID : 27208977)@transketolase, putative, expressed K01662: 1-deoxy-D-xylulose-5-phosphate synthase
10 Sobic.006G261550 - -
11 Sobic.002G182850 - -
12 Sobic.006G100400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.008G006500 zinc knuckle family protein, expressed -
14 Sobic.002G209000 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
15 Sobic.003G374150 - -
16 Sobic.001G483500 DUF567 domain containing protein, putative, expressed -
17 Sobic.001G251900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@exonuclease, putative, expressed -
18 Sobic.005G136800 only inducible by pathogen inoculation(PubMedID : 20529887)@"SbCHS2 encodes a typical CHS that synthesizes naringenin chalcone, which is necessary for the formation of different flavonoid metabolites."(PubMedID : 15821144)@chalcone synthase, putative, expressed K00660: chalcone synthase
19 Sobic.001G101400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@PIII4 - Proteinase inhibitor II family protein precursor, expressed -
20 Sobic.009G197700 expressed protein -


Gene co-expression network
sample Sobic009G001000 Sobic009G001000 Sobic010G164900 Sobic010G164900 Sobic009G001000--Sobic010G164900 Sobic006G126400 Sobic006G126400 Sobic009G001000--Sobic006G126400 Sobic010G016800 Sobic010G016800 Sobic009G001000--Sobic010G016800 Sobic004G006966 Sobic004G006966 Sobic009G001000--Sobic004G006966 Sobic002G064700 Sobic002G064700 Sobic009G001000--Sobic002G064700 Sobic010G164900--Sobic009G001000 Sobic003G233100 Sobic003G233100 Sobic010G164900--Sobic003G233100 Sobic002G138500 Sobic002G138500 Sobic010G164900--Sobic002G138500 Sobic006G075801 Sobic006G075801 Sobic010G164900--Sobic006G075801 Sobic010G164900--Sobic002G064700 Sobic010G040600 Sobic010G040600 Sobic010G164900--Sobic010G040600 Sobic002G012800 Sobic002G012800 Sobic010G164900--Sobic002G012800 Sobic008G104500 Sobic008G104500 Sobic010G164900--Sobic008G104500 Sobic003G201300 Sobic003G201300 Sobic010G164900--Sobic003G201300 Sobic003G441100 Sobic003G441100 Sobic006G126400--Sobic003G441100 Sobic006G126400--Sobic010G016800 Sobic001G251900 Sobic001G251900 Sobic006G126400--Sobic001G251900 Sobic006G126400--Sobic004G006966 Sobic001G101400 Sobic001G101400 Sobic006G126400--Sobic001G101400 Sobic010G016800--Sobic004G006966 Sobic010G016800--Sobic001G101400 Sobic003G374150 Sobic003G374150 Sobic010G016800--Sobic003G374150 Sobic001G483500 Sobic001G483500 Sobic010G016800--Sobic001G483500 Sobic005G136800 Sobic005G136800 Sobic010G016800--Sobic005G136800 Sobic004G006966--Sobic004G006966 Sobic004G006966--Sobic003G374150 Sobic004G006966--Sobic005G136800 Sobic004G006966--Sobic010G016800 Sobic004G006966--Sobic001G483500 Sobic002G182850 Sobic002G182850 Sobic004G006966--Sobic002G182850 Sobic009G167300 Sobic009G167300 Sobic002G064700--Sobic009G167300 Sobic003G337100 Sobic003G337100 Sobic002G064700--Sobic003G337100 Sobic002G326000 Sobic002G326000 Sobic002G064700--Sobic002G326000 Sobic010G045200 Sobic010G045200 Sobic002G064700--Sobic010G045200 Sobic002G064700--Sobic006G075801 Sobic002G064700--Sobic003G201300 Sobic006G209100 Sobic006G209100 Sobic002G064700--Sobic006G209100 Sobic006G201200 Sobic006G201200 Sobic002G064700--Sobic006G201200 Sobic004G342900 Sobic004G342900 Sobic002G064700--Sobic004G342900
Octagon: transcription factors


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