Gene annotation
Transcriptome id Sobic.002G064700.1
Synonym DXS, DXPS2, DEF, Sb02g005410, CLA, CLA1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Protein 1-deoxy-D-xylulose-5-phosphate synthase (Os) (PubMedID : 27208977)
transketolase, putative, expressed
UniProt A0A1W0W2N7
Pfam PF00676 PF02780 PF02779
Panther DB PTHR11624 PTHR11624:SF83
NCBI CDD KOG0523; Transketolase
KEGG Orthology K01662; 1-deoxy-D-xylulose-5-phosphate synthase
Gene Ontology GO:0016624; oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor GO:0008152metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT4G15560 : Deoxyxylulose-5-phosphate synthase
RAP-DB (Rice) LOC_Os07g09190.1 : transketolase, putative, expressed
MaizeGDB (Corn) Zm00025a043672 , Zm00025a045275
Brachypodium KQK20495 , KQK06295
Barley HORVU1Hr1G084900.10 , HORVU1Hr1G084900.11 , HORVU1Hr1G084900.7 , HORVU1Hr1G084900.4 , HORVU1Hr1G084900.5 , HORVU1Hr1G084900.3 , HORVU1Hr1G084900.8 , HORVU1Hr1G084900.9 , HORVU2Hr1G126150.3 , HORVU2Hr1G126150.2 , HORVU2Hr1G126150.4
Wheat TraesCS1D02G255100 , TraesCS1A02G384300 , TraesCS2D02G575800 , TraesCS1B02G266500 , TraesCS2A02G565400 , TraesCS1D02G392500 , TraesCS1A02G255800 , TraesCS2B02G626400 , TraesCS1B02G411100 , TraesCS2B02G626400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G167300 CCT motif family protein, expressed -
2 Sobic.003G337100 expressed protein -
3 Sobic.002G326000 aspartic proteinase nepenthesin-1 precursor, putative, expressed -
4 Sobic.010G045200 expressed protein -
5 Sobic.006G075801 - -
6 Sobic.003G201300 hsp20/alpha crystallin family protein, putative, expressed -
7 Sobic.006G209100 - -
8 Sobic.006G201200 peptide transporter PTR2, putative, expressed -
9 Sobic.004G342900 RALFL22 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
10 Sobic.010G231400 zinc finger, C3HC4 type domain containing protein, expressed -
11 Sobic.008G104500 ureide permease, putative, expressed -
12 Sobic.006G239100 VQ domain containing protein, putative, expressed -
13 Sobic.009G164200 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
14 Sobic.001G361500 expressed protein -
15 Sobic.003G423100 NAM, putative, expressed -
16 Sobic.002G138500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 27329702)@expressed protein -
17 Sobic.004G324900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.009G116766 - -
19 Sobic.002G205201 - -
20 Sobic.007G207300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@calvin cycle protein CP12, putative, expressed -


Gene co-expression network
sample Sobic002G064700 Sobic002G064700 Sobic009G167300 Sobic009G167300 Sobic002G064700--Sobic009G167300 Sobic003G337100 Sobic003G337100 Sobic002G064700--Sobic003G337100 Sobic002G326000 Sobic002G326000 Sobic002G064700--Sobic002G326000 Sobic010G045200 Sobic010G045200 Sobic002G064700--Sobic010G045200 Sobic006G075801 Sobic006G075801 Sobic002G064700--Sobic006G075801 Sobic003G201300 Sobic003G201300 Sobic002G064700--Sobic003G201300 Sobic006G209100 Sobic006G209100 Sobic002G064700--Sobic006G209100 Sobic006G201200 Sobic006G201200 Sobic002G064700--Sobic006G201200 Sobic004G342900 Sobic004G342900 Sobic002G064700--Sobic004G342900 Sobic009G167300--Sobic006G209100 Sobic009G167300--Sobic003G201300 Sobic010G231400 Sobic010G231400 Sobic009G167300--Sobic010G231400 Sobic009G167300--Sobic006G201200 Sobic009G164200 Sobic009G164200 Sobic009G167300--Sobic009G164200 Sobic001G361500 Sobic001G361500 Sobic009G167300--Sobic001G361500 Sobic006G185400 Sobic006G185400 Sobic009G167300--Sobic006G185400 Sobic001G172900 Sobic001G172900 Sobic009G167300--Sobic001G172900 Sobic004G330500 Sobic004G330500 Sobic009G167300--Sobic004G330500 Sobic003G337100--Sobic009G167300 Sobic003G337100--Sobic004G342900 Sobic003G337100--Sobic002G326000 Sobic010G158200 Sobic010G158200 Sobic003G337100--Sobic010G158200 Sobic003G337100--Sobic010G045200 Sobic003G337100--Sobic006G075801 Sobic003G337100--Sobic003G201300 Sobic006G239100 Sobic006G239100 Sobic003G337100--Sobic006G239100 Sobic003G337100--Sobic010G231400 Sobic002G326000--Sobic010G158200 Sobic002G326000--Sobic004G342900 Sobic002G326000--Sobic003G337100 Sobic002G326000--Sobic006G075801 Sobic002G326000--Sobic009G167300 Sobic003G283500 Sobic003G283500 Sobic002G326000--Sobic003G283500 Sobic002G253000 Sobic002G253000 Sobic002G326000--Sobic002G253000 Sobic002G326000--Sobic010G045200 Sobic001G388900 Sobic001G388900 Sobic002G326000--Sobic001G388900 Sobic005G231201 Sobic005G231201 Sobic010G045200--Sobic005G231201 Sobic010G045200--Sobic009G167300 Sobic010G045200--Sobic006G239100 Sobic010G045200--Sobic009G164200 Sobic010G045200--Sobic010G231400 Sobic010G045200--Sobic006G201200 Sobic008G127600 Sobic008G127600 Sobic010G045200--Sobic008G127600 Sobic004G098200 Sobic004G098200 Sobic010G045200--Sobic004G098200 Sobic010G045200--Sobic001G172900 Sobic006G075801--Sobic010G158200 Sobic006G075801--Sobic002G326000 Sobic006G075801--Sobic003G337100 Sobic006G075801--Sobic006G239100 Sobic006G075801--Sobic009G167300 Sobic006G075801--Sobic004G342900 Sobic006G075801--Sobic005G231201 Sobic006G075801--Sobic010G045200 Sobic003G022800 Sobic003G022800 Sobic006G075801--Sobic003G022800 Sobic008G078600 Sobic008G078600 Sobic003G201300--Sobic008G078600 Sobic003G201300--Sobic001G361500 Sobic003G201300--Sobic009G164200 Sobic009G116766 Sobic009G116766 Sobic003G201300--Sobic009G116766 Sobic007G224800 Sobic007G224800 Sobic003G201300--Sobic007G224800 Sobic003G201300--Sobic009G167300 Sobic003G201300--Sobic006G209100 Sobic005G087600 Sobic005G087600 Sobic003G201300--Sobic005G087600 Sobic003G201300--Sobic010G231400 Sobic006G209100--Sobic006G185400 Sobic006G209100--Sobic004G330500 Sobic005G189400 Sobic005G189400 Sobic006G209100--Sobic005G189400 Sobic006G209100--Sobic001G361500 Sobic002G205201 Sobic002G205201 Sobic006G209100--Sobic002G205201 Sobic007G152200 Sobic007G152200 Sobic006G209100--Sobic007G152200 Sobic006G209100--Sobic009G164200 Sobic008G023500 Sobic008G023500 Sobic006G209100--Sobic008G023500 Sobic005G037500 Sobic005G037500 Sobic006G209100--Sobic005G037500 Sobic006G201200--Sobic006G209100 Sobic006G201200--Sobic001G361500 Sobic006G201200--Sobic006G185400 Sobic006G201200--Sobic004G330500 Sobic010G275550 Sobic010G275550 Sobic006G201200--Sobic010G275550 Sobic006G201200--Sobic005G189400 Sobic006G201200--Sobic009G164200 Sobic006G201200--Sobic007G152200 Sobic006G201200--Sobic002G205201 Sobic004G342900--Sobic003G337100 Sobic004G342900--Sobic002G326000 Sobic004G342900--Sobic010G158200 Sobic004G342900--Sobic002G253000 Sobic004G342900--Sobic006G075801 Sobic005G016600 Sobic005G016600 Sobic004G342900--Sobic005G016600 Sobic004G300701 Sobic004G300701 Sobic004G342900--Sobic004G300701 Sobic004G342900--Sobic003G283500 Sobic004G342900--Sobic009G167300
Octagon: transcription factors


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