Gene annotation
Transcriptome id Sobic.010G164900.1
Synonym Sb10g021880
Functional annotation SWIM zinc finger family protein, expressed
UniProt C5Z4J9
Pfam PF04434
Panther DB PTHR21540 PTHR21540:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT5G11620 : SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related
RAP-DB (Rice) LOC_Os06g36030.1 : SWIM zinc finger family protein, expressed
MaizeGDB (Corn) Zm00025a051069
Brachypodium -
Barley HORVU7Hr1G088780.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G001000 exonuclease, putative, expressed -
2 Sobic.003G233100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@anthocyanin 3-O-beta-glucosyltransferase, putative, expressed -
3 Sobic.002G138500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 27329702)@expressed protein -
4 Sobic.006G075801 - -
5 Sobic.002G064700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein 1-deoxy-D-xylulose-5-phosphate synthase (Os)(PubMedID : 27208977)@transketolase, putative, expressed K01662: 1-deoxy-D-xylulose-5-phosphate synthase
6 Sobic.010G040600 ubiquitin family protein, putative, expressed K08770: ubiquitin C
7 Sobic.002G012800 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
8 Sobic.008G104500 ureide permease, putative, expressed -
9 Sobic.003G201300 hsp20/alpha crystallin family protein, putative, expressed -
10 Sobic.008G066000 cyclin-dependent kinase G-2, putative, expressed K08818: cell division cycle 2-like
11 Sobic.009G167300 CCT motif family protein, expressed -
12 Sobic.003G348700 hydrolase, alpha/beta fold family domain containing protein, expressed -
13 Sobic.006G239100 VQ domain containing protein, putative, expressed -
14 Sobic.007G224800 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
15 Sobic.008G144500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ZOS12-09 - C2H2 zinc finger protein, expressed -
16 Sobic.005G087600 AP2 domain containing protein, expressed -
17 Sobic.005G215766 - -
18 Sobic.008G078600 NADP-dependent oxidoreductase, putative, expressed -
19 Sobic.006G166300 WRKY36, expressed -
20 Sobic.010G158200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic010G164900 Sobic010G164900 Sobic009G001000 Sobic009G001000 Sobic010G164900--Sobic009G001000 Sobic003G233100 Sobic003G233100 Sobic010G164900--Sobic003G233100 Sobic002G138500 Sobic002G138500 Sobic010G164900--Sobic002G138500 Sobic006G075801 Sobic006G075801 Sobic010G164900--Sobic006G075801 Sobic002G064700 Sobic002G064700 Sobic010G164900--Sobic002G064700 Sobic010G040600 Sobic010G040600 Sobic010G164900--Sobic010G040600 Sobic002G012800 Sobic002G012800 Sobic010G164900--Sobic002G012800 Sobic008G104500 Sobic008G104500 Sobic010G164900--Sobic008G104500 Sobic003G201300 Sobic003G201300 Sobic010G164900--Sobic003G201300 Sobic009G001000--Sobic010G164900 Sobic006G126400 Sobic006G126400 Sobic009G001000--Sobic006G126400 Sobic010G016800 Sobic010G016800 Sobic009G001000--Sobic010G016800 Sobic004G006966 Sobic004G006966 Sobic009G001000--Sobic004G006966 Sobic009G001000--Sobic002G064700 Sobic003G198100 Sobic003G198100 Sobic003G233100--Sobic003G198100 Sobic008G066000 Sobic008G066000 Sobic003G233100--Sobic008G066000 Sobic003G233100--Sobic010G164900 Sobic003G095400 Sobic003G095400 Sobic003G233100--Sobic003G095400 Sobic007G175900 Sobic007G175900 Sobic003G233100--Sobic007G175900 Sobic010G088950 Sobic010G088950 Sobic003G233100--Sobic010G088950 Sobic001G038200 Sobic001G038200 Sobic003G233100--Sobic001G038200 Sobic006G166300 Sobic006G166300 Sobic003G233100--Sobic006G166300 Sobic003G233100--Sobic010G040600 Sobic002G138500--Sobic008G104500 Sobic009G167300 Sobic009G167300 Sobic002G138500--Sobic009G167300 Sobic010G231400 Sobic010G231400 Sobic002G138500--Sobic010G231400 Sobic006G209100 Sobic006G209100 Sobic002G138500--Sobic006G209100 Sobic004G324900 Sobic004G324900 Sobic002G138500--Sobic004G324900 Sobic003G337100 Sobic003G337100 Sobic002G138500--Sobic003G337100 Sobic006G201200 Sobic006G201200 Sobic002G138500--Sobic006G201200 Sobic005G037500 Sobic005G037500 Sobic002G138500--Sobic005G037500 Sobic006G185400 Sobic006G185400 Sobic002G138500--Sobic006G185400 Sobic010G158200 Sobic010G158200 Sobic006G075801--Sobic010G158200 Sobic002G326000 Sobic002G326000 Sobic006G075801--Sobic002G326000 Sobic006G075801--Sobic003G337100 Sobic006G239100 Sobic006G239100 Sobic006G075801--Sobic006G239100 Sobic006G075801--Sobic009G167300 Sobic004G342900 Sobic004G342900 Sobic006G075801--Sobic004G342900 Sobic005G231201 Sobic005G231201 Sobic006G075801--Sobic005G231201 Sobic010G045200 Sobic010G045200 Sobic006G075801--Sobic010G045200 Sobic003G022800 Sobic003G022800 Sobic006G075801--Sobic003G022800 Sobic002G064700--Sobic009G167300 Sobic002G064700--Sobic003G337100 Sobic002G064700--Sobic002G326000 Sobic002G064700--Sobic010G045200 Sobic002G064700--Sobic006G075801 Sobic002G064700--Sobic003G201300 Sobic002G064700--Sobic006G209100 Sobic002G064700--Sobic006G201200 Sobic002G064700--Sobic004G342900 Sobic010G040600--Sobic006G075801 Sobic010G040600--Sobic010G164900 Sobic010G040700 Sobic010G040700 Sobic010G040600--Sobic010G040700 Sobic010G040600--Sobic008G066000 Sobic010G040600--Sobic003G233100 Sobic010G040600--Sobic002G138500 Sobic010G040600--Sobic010G045200 Sobic008G150400 Sobic008G150400 Sobic010G040600--Sobic008G150400 Sobic010G040600--Sobic010G158200 Sobic003G348700 Sobic003G348700 Sobic002G012800--Sobic003G348700 Sobic006G208100 Sobic006G208100 Sobic002G012800--Sobic006G208100 Sobic010G201200 Sobic010G201200 Sobic002G012800--Sobic010G201200 Sobic001G027800 Sobic001G027800 Sobic002G012800--Sobic001G027800 Sobic001G210200 Sobic001G210200 Sobic002G012800--Sobic001G210200 Sobic008G104500--Sobic002G138500 Sobic008G104500--Sobic003G337100 Sobic008G104500--Sobic002G064700 Sobic008G104500--Sobic009G167300 Sobic008G104500--Sobic004G324900 Sobic008G104500--Sobic010G231400 Sobic008G104500--Sobic006G201200 Sobic008G104500--Sobic006G209100 Sobic001G361500 Sobic001G361500 Sobic008G104500--Sobic001G361500 Sobic008G078600 Sobic008G078600 Sobic003G201300--Sobic008G078600 Sobic003G201300--Sobic001G361500 Sobic009G164200 Sobic009G164200 Sobic003G201300--Sobic009G164200 Sobic009G116766 Sobic009G116766 Sobic003G201300--Sobic009G116766 Sobic007G224800 Sobic007G224800 Sobic003G201300--Sobic007G224800 Sobic003G201300--Sobic009G167300 Sobic003G201300--Sobic006G209100 Sobic005G087600 Sobic005G087600 Sobic003G201300--Sobic005G087600 Sobic003G201300--Sobic010G231400
Octagon: transcription factors


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