Gene annotation
Transcriptome id Sobic.010G040600.1
Synonym Sb10g003590, UBQ5
Functional annotation ubiquitin family protein, putative, expressed
UniProt C5Z4A8
Pfam PF11976
Panther DB PTHR10666
NCBI CDD KOG0001; Ubiquitin and ubiquitin-like proteins KOG0005Ubiquitin-like protein
KEGG Orthology K08770; ubiquitin C
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G52590 : ubiquitin extension protein 1
RAP-DB (Rice) LOC_Os09g31019.1 : ubiquitin fusion protein, putative, expressed
MaizeGDB (Corn) Zm00025a036147 , Zm00025a005173 , Zm00025a050018 , Zm00025a039850 , Zm00025a013490
Brachypodium KQJ91591 , KQJ95133 , KQJ93465 , KQK17173 , KQK06725 , KQK04203 , KQK17147 , PNT77708 , KQK04197 , KQK17095 , KQK04204 , KQK07353 , KQJ89932 , KQJ93464 , KQJ93343 , PNT65948
Barley HORVU6Hr1G026280.8 , HORVU6Hr1G026280.9 , HORVU6Hr1G026280.6 , HORVU6Hr1G026280.7 , HORVU6Hr1G026280.4 , HORVU6Hr1G026280.5 , HORVU6Hr1G026280.2 , HORVU6Hr1G026280.3 , HORVU7Hr1G102840.10 , HORVU7Hr1G102840.11 , HORVU4Hr1G001170.5 , HORVU4Hr1G001170.4 , HORVU4Hr1G001170.1 , HORVU4Hr1G001170.3 , HORVU4Hr1G001170.2 , HORVU5Hr1G019590.13 , HORVU5Hr1G019590.12 , HORVU5Hr1G019590.11 , HORVU5Hr1G019590.10 , HORVU5Hr1G019590.15 , HORVU5Hr1G019590.14 , HORVU1Hr1G043930.6 , HORVU1Hr1G043930.7 , HORVU1Hr1G043930.4 , HORVU1Hr1G043930.5 , HORVU1Hr1G043930.2 , HORVU1Hr1G043930.3 , HORVU1Hr1G043930.1 , HORVU1Hr1G043930.8 , HORVU1Hr1G043930.9 , HORVU1Hr1G043930.10 , HORVU1Hr1G043930.11 , HORVU5Hr1G072680.1 , HORVU5Hr1G072680.2 , HORVU1Hr1G023660.1 , HORVU1Hr1G023660.2 , HORVU1Hr1G023660.3 , HORVU7Hr1G102840.1 , HORVU2Hr1G104440.2 , HORVU2Hr1G104440.1 , HORVU2Hr1G104440.7 , HORVU2Hr1G104440.5 , HORVU6Hr1G026260.1 , HORVU5Hr1G019600.3 , HORVU5Hr1G019600.2 , HORVU5Hr1G019600.1 , HORVU5Hr1G019600.7 , HORVU5Hr1G019600.6 , HORVU5Hr1G019600.5 , HORVU5Hr1G019600.4 , HORVU6Hr1G026260.18 , HORVU6Hr1G026260.19 , HORVU6Hr1G026260.16 , HORVU6Hr1G026260.17 , HORVU6Hr1G026260.14 , HORVU6Hr1G026260.15 , HORVU6Hr1G026260.12 , HORVU6Hr1G026260.13 , HORVU6Hr1G026260.10 , HORVU6Hr1G026260.11 , HORVU7Hr1G103550.1 , HORVU7Hr1G103550.3 , HORVU7Hr1G103550.2 , HORVU7Hr1G103550.4 , HORVU3Hr1G014180.1 , HORVU6Hr1G026200.6 , HORVU6Hr1G026200.7 , HORVU6Hr1G026200.4 , HORVU6Hr1G026200.5 , HORVU6Hr1G026200.2 , HORVU6Hr1G026200.3 , HORVU6Hr1G026200.1 , HORVU6Hr1G026200.8 , HORVU6Hr1G026200.9 , HORVU3Hr1G014150.2 , HORVU3Hr1G014150.3 , HORVU3Hr1G014150.1 , HORVU3Hr1G014150.4 , HORVU3Hr1G014150.5 , HORVU7Hr1G102840.4 , HORVU7Hr1G102840.5 , HORVU7Hr1G102840.6 , HORVU6Hr1G026260.8 , HORVU6Hr1G026260.9 , HORVU7Hr1G102840.2 , HORVU7Hr1G102840.3 , HORVU6Hr1G026260.5 , HORVU6Hr1G026260.6 , HORVU6Hr1G026260.7 , HORVU7Hr1G102840.8 , HORVU7Hr1G102840.9 , HORVU6Hr1G026260.2 , HORVU1Hr1G087690.9 , HORVU1Hr1G087690.8 , HORVU1Hr1G087690.3 , HORVU1Hr1G087690.2 , HORVU1Hr1G087690.1 , HORVU1Hr1G087690.7 , HORVU1Hr1G087690.6 , HORVU1Hr1G087690.5 , HORVU1Hr1G087690.4 , HORVU6Hr1G026200.19 , HORVU6Hr1G026200.14 , HORVU6Hr1G026200.15 , HORVU6Hr1G026200.10 , HORVU6Hr1G026200.11 , HORVU6Hr1G026200.12 , HORVU6Hr1G026200.13 , HORVU6Hr1G026260.20 , HORVU7Hr1G103160.1 , HORVU7Hr1G103160.2 , HORVU7Hr1G103160.3 , HORVU7Hr1G103160.4 , HORVU6Hr1G016150.5 , HORVU6Hr1G016150.4 , HORVU6Hr1G016150.6 , HORVU6Hr1G016150.1 , HORVU6Hr1G016150.3 , HORVU6Hr1G016150.2 , HORVU6Hr1G021700.6 , HORVU6Hr1G021700.4 , HORVU6Hr1G021700.5 , HORVU6Hr1G021700.2 , HORVU6Hr1G021700.3 , HORVU6Hr1G021700.1 , HORVU5Hr1G019590.9 , HORVU5Hr1G019590.8 , HORVU5Hr1G019590.3 , HORVU5Hr1G019590.2 , HORVU5Hr1G019590.7 , HORVU5Hr1G019590.6 , HORVU5Hr1G019590.5 , HORVU7Hr1G103170.7 , HORVU7Hr1G103170.6 , HORVU7Hr1G103170.5 , HORVU7Hr1G103170.4 , HORVU7Hr1G103170.3 , HORVU7Hr1G103170.2 , HORVU7Hr1G103170.1 , HORVU7Hr1G103170.9 , HORVU7Hr1G103170.8 , HORVU6Hr1G026280.14 , HORVU6Hr1G026280.15 , HORVU1Hr1G087690.10 , HORVU6Hr1G026280.10 , HORVU6Hr1G026280.11 , HORVU6Hr1G026280.12 , HORVU6Hr1G026280.13 , HORVU1Hr1G087690.17 , HORVU1Hr1G087690.16 , HORVU1Hr1G087690.15 , HORVU3Hr1G014180.5 , HORVU3Hr1G014180.4 , HORVU3Hr1G014180.3 , HORVU3Hr1G014180.2 , HORVU6Hr1G026200.21 , HORVU6Hr1G026200.22 , HORVU2Hr1G104440.6 , HORVU4Hr1G061900.4 , HORVU4Hr1G061900.2 , HORVU4Hr1G061900.3 , HORVU4Hr1G061900.1 , HORVU0Hr1G038500.1 , HORVU0Hr1G038500.2 , HORVU0Hr1G038500.3 , HORVU6Hr1G076980.1 , HORVU1Hr1G087690.13 , HORVU1Hr1G087690.12 , HORVU1Hr1G087690.11 , HORVU1Hr1G087690.14 , HORVU6Hr1G014970.1 , HORVU6Hr1G014970.3 , HORVU6Hr1G014970.2 , HORVU6Hr1G014970.5 , HORVU6Hr1G014970.4 , HORVU6Hr1G014970.7 , HORVU6Hr1G014970.6 , HORVU6Hr1G014970.8 , HORVU5Hr1G072680.3
Wheat TraesCS6D02G109600 , TraesCS7D02G443100 , TraesCS7A02G453300 , TraesCS7D02G474300 , TraesCS6A02G136700 , TraesCS4D02G006900 , TraesCS6B02G148000 , TraesCSU02G140400 , TraesCS2A02G408500 , TraesCS1D02G314000 , TraesCS1D02G314000 , TraesCS1D02G314000 , TraesCS2D02G405500 , TraesCS2B02G426500 , TraesCS7B02G390900 , TraesCS5D02G087500 , TraesCS2A02G458000 , TraesCS2B02G480600 , TraesCS6A02G087800 , TraesCS4B02G218100 , TraesCS6A02G119700 , TraesCS6A02G119700 , TraesCS2D02G458600 , TraesCSU02G018500 , TraesCS4B02G390400 , TraesCS6A02G266000 , TraesCS5B02G080200 , TraesCS4A02G086400 , TraesCS4D02G218400 , TraesCS7D02G474200 , TraesCS7B02G354000 , TraesCS7B02G354000 , TraesCS1B02G241200 , TraesCS6A02G087100 , TraesCS6B02G164700 , TraesCS6B02G164700 , TraesCS4D02G218300 , TraesCS7B02G354200 , TraesCS7B02G354100 , TraesCS4B02G008400 , TraesCS6B02G110300 , TraesCS7A02G453400 , TraesCS7A02G453600 , TraesCS6A02G112400 , TraesCS5D02G269800 , TraesCS1A02G227100 , TraesCS2A02G458800 , TraesCS6B02G140600 , TraesCS2D02G580700 , TraesCS4A02G086300 , TraesCS2B02G480400 , TraesCSU02G019400 , TraesCS5A02G073800 , TraesCS6D02G125600 , TraesCS7B02G390800 , TraesCS4A02G077000 , TraesCS4A02G077000 , TraesCS2A02G408200 , TraesCS7A02G506300 , TraesCS4B02G218000 , TraesCS4A02G306500 , TraesCS1A02G313500 , TraesCS1A02G313500 , TraesCS1A02G313500 , TraesCS1A02G313500
Populus PNT59588 , PNS95081 , PNS95082 , PNS95078 , PNS95079 , PNS95075 , PNS95076 , PNS95077 , PNT13284 , PNT13285 , PNT13286 , PNT13287 , PNT13281 , PNT13282 , PNT13283 , PNT13288 , PNT13289 , PNT13292 , PNT13291 , PNT13290 , PNT59596 , PNT59594 , PNT59595 , PNT59593 , PNT59590 , PNT59600


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G075801 - -
2 Sobic.010G164900 SWIM zinc finger family protein, expressed -
3 Sobic.010G040700 transferase family domain containing protein, expressed -
4 Sobic.008G066000 cyclin-dependent kinase G-2, putative, expressed K08818: cell division cycle 2-like
5 Sobic.003G233100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@anthocyanin 3-O-beta-glucosyltransferase, putative, expressed -
6 Sobic.002G138500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 27329702)@expressed protein -
7 Sobic.010G045200 expressed protein -
8 Sobic.008G150400 WD-40 repeat family protein, putative, expressed -
9 Sobic.010G158200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.003G363200 ZOS1-17 - C2H2 zinc finger protein, expressed -
11 Sobic.005G231201 - -
12 Sobic.005G121100 ZOS11-03 - C2H2 zinc finger protein, expressed -
13 Sobic.001G251300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
14 Sobic.009G147800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@patellin protein, putative, expressed -
15 Sobic.003G198100 - -
16 Sobic.006G086000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
17 Sobic.006G018800 ethylene receptor, putative, expressed K14509: ETR, ethylene receptor
18 Sobic.004G293200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger protein, putative, expressed -
19 Sobic.003G337100 expressed protein -
20 Sobic.006G100100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RING-H2 finger protein ATL3B precursor, putative, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55


Gene co-expression network
sample Sobic010G040600 Sobic010G040600 Sobic006G075801 Sobic006G075801 Sobic010G040600--Sobic006G075801 Sobic010G164900 Sobic010G164900 Sobic010G040600--Sobic010G164900 Sobic010G040700 Sobic010G040700 Sobic010G040600--Sobic010G040700 Sobic008G066000 Sobic008G066000 Sobic010G040600--Sobic008G066000 Sobic003G233100 Sobic003G233100 Sobic010G040600--Sobic003G233100 Sobic002G138500 Sobic002G138500 Sobic010G040600--Sobic002G138500 Sobic010G045200 Sobic010G045200 Sobic010G040600--Sobic010G045200 Sobic008G150400 Sobic008G150400 Sobic010G040600--Sobic008G150400 Sobic010G158200 Sobic010G158200 Sobic010G040600--Sobic010G158200 Sobic006G075801--Sobic010G158200 Sobic002G326000 Sobic002G326000 Sobic006G075801--Sobic002G326000 Sobic003G337100 Sobic003G337100 Sobic006G075801--Sobic003G337100 Sobic006G239100 Sobic006G239100 Sobic006G075801--Sobic006G239100 Sobic009G167300 Sobic009G167300 Sobic006G075801--Sobic009G167300 Sobic004G342900 Sobic004G342900 Sobic006G075801--Sobic004G342900 Sobic005G231201 Sobic005G231201 Sobic006G075801--Sobic005G231201 Sobic006G075801--Sobic010G045200 Sobic003G022800 Sobic003G022800 Sobic006G075801--Sobic003G022800 Sobic009G001000 Sobic009G001000 Sobic010G164900--Sobic009G001000 Sobic010G164900--Sobic003G233100 Sobic010G164900--Sobic002G138500 Sobic010G164900--Sobic006G075801 Sobic002G064700 Sobic002G064700 Sobic010G164900--Sobic002G064700 Sobic010G164900--Sobic010G040600 Sobic002G012800 Sobic002G012800 Sobic010G164900--Sobic002G012800 Sobic008G104500 Sobic008G104500 Sobic010G164900--Sobic008G104500 Sobic003G201300 Sobic003G201300 Sobic010G164900--Sobic003G201300 Sobic006G018800 Sobic006G018800 Sobic010G040700--Sobic006G018800 Sobic006G174500 Sobic006G174500 Sobic010G040700--Sobic006G174500 Sobic003G431100 Sobic003G431100 Sobic010G040700--Sobic003G431100 Sobic003G087600 Sobic003G087600 Sobic010G040700--Sobic003G087600 Sobic010G040700--Sobic008G150400 Sobic009G173300 Sobic009G173300 Sobic010G040700--Sobic009G173300 Sobic004G189100 Sobic004G189100 Sobic010G040700--Sobic004G189100 Sobic002G424800 Sobic002G424800 Sobic010G040700--Sobic002G424800 Sobic008G135100 Sobic008G135100 Sobic010G040700--Sobic008G135100 Sobic007G175900 Sobic007G175900 Sobic008G066000--Sobic007G175900 Sobic004G084100 Sobic004G084100 Sobic008G066000--Sobic004G084100 Sobic010G076600 Sobic010G076600 Sobic008G066000--Sobic010G076600 Sobic006G095600 Sobic006G095600 Sobic008G066000--Sobic006G095600 Sobic003G373000 Sobic003G373000 Sobic008G066000--Sobic003G373000 Sobic003G353800 Sobic003G353800 Sobic008G066000--Sobic003G353800 Sobic001G290400 Sobic001G290400 Sobic008G066000--Sobic001G290400 Sobic007G212200 Sobic007G212200 Sobic008G066000--Sobic007G212200 Sobic009G071800 Sobic009G071800 Sobic008G066000--Sobic009G071800 Sobic003G198100 Sobic003G198100 Sobic003G233100--Sobic003G198100 Sobic003G233100--Sobic008G066000 Sobic003G233100--Sobic010G164900 Sobic003G095400 Sobic003G095400 Sobic003G233100--Sobic003G095400 Sobic003G233100--Sobic007G175900 Sobic010G088950 Sobic010G088950 Sobic003G233100--Sobic010G088950 Sobic001G038200 Sobic001G038200 Sobic003G233100--Sobic001G038200 Sobic006G166300 Sobic006G166300 Sobic003G233100--Sobic006G166300 Sobic003G233100--Sobic010G040600 Sobic002G138500--Sobic008G104500 Sobic002G138500--Sobic009G167300 Sobic010G231400 Sobic010G231400 Sobic002G138500--Sobic010G231400 Sobic006G209100 Sobic006G209100 Sobic002G138500--Sobic006G209100 Sobic004G324900 Sobic004G324900 Sobic002G138500--Sobic004G324900 Sobic002G138500--Sobic003G337100 Sobic006G201200 Sobic006G201200 Sobic002G138500--Sobic006G201200 Sobic005G037500 Sobic005G037500 Sobic002G138500--Sobic005G037500 Sobic006G185400 Sobic006G185400 Sobic002G138500--Sobic006G185400 Sobic010G045200--Sobic005G231201 Sobic010G045200--Sobic009G167300 Sobic010G045200--Sobic006G239100 Sobic009G164200 Sobic009G164200 Sobic010G045200--Sobic009G164200 Sobic010G045200--Sobic010G231400 Sobic010G045200--Sobic006G201200 Sobic008G127600 Sobic008G127600 Sobic010G045200--Sobic008G127600 Sobic004G098200 Sobic004G098200 Sobic010G045200--Sobic004G098200 Sobic001G172900 Sobic001G172900 Sobic010G045200--Sobic001G172900 Sobic008G150400--Sobic009G173300 Sobic009G167000 Sobic009G167000 Sobic008G150400--Sobic009G167000 Sobic004G244300 Sobic004G244300 Sobic008G150400--Sobic004G244300 Sobic010G105500 Sobic010G105500 Sobic008G150400--Sobic010G105500 Sobic006G194600 Sobic006G194600 Sobic008G150400--Sobic006G194600 Sobic008G040900 Sobic008G040900 Sobic008G150400--Sobic008G040900 Sobic002G021300 Sobic002G021300 Sobic008G150400--Sobic002G021300 Sobic006G203000 Sobic006G203000 Sobic008G150400--Sobic006G203000 Sobic002G037400 Sobic002G037400 Sobic008G150400--Sobic002G037400 Sobic010G158200--Sobic006G075801 Sobic010G158200--Sobic002G326000 Sobic010G158200--Sobic003G337100 Sobic010G158200--Sobic004G342900 Sobic010G125400 Sobic010G125400 Sobic010G158200--Sobic010G125400 Sobic002G253000 Sobic002G253000 Sobic010G158200--Sobic002G253000 Sobic002G171600 Sobic002G171600 Sobic010G158200--Sobic002G171600 Sobic002G318501 Sobic002G318501 Sobic010G158200--Sobic002G318501 Sobic010G158200--Sobic009G167300
Octagon: transcription factors


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