Gene annotation
Transcriptome id Sobic.009G037600.2,Sobic.009G037600.1
Synonym Sb09g003210
Functional annotation RNA methyltransferase, TrmH family protein, putative, expressed
UniProt C5YZN2
Pfam PF00588
Panther DB PTHR12029
NCBI CDD KOG0838; RNA Methylase, SpoU family
KEGG Orthology -
Gene Ontology GO:0008173; RNA methyltransferase activity GO:0006396RNA processing GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT4G15520 : tRNA/rRNA methyltransferase (SpoU) family protein
RAP-DB (Rice) LOC_Os05g04940.1 : RNA methyltransferase, TrmH family protein, putative, expressed
MaizeGDB (Corn) Zm00025a015128
Brachypodium KQK07626
Barley HORVU1Hr1G018260.12 , HORVU1Hr1G018260.14 , HORVU1Hr1G018260.15 , HORVU1Hr1G018260.16
Wheat TraesCS1B02G101600 , TraesCS1A02G084100 , TraesCS1D02G085300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G076450 - -
2 Sobic.005G040950 - -
3 Sobic.010G051900 expressed protein -
4 Sobic.003G289300 3-5 exonuclease domain-containing protein, putative, expressed -
5 Sobic.008G119100 - -
6 Sobic.001G241500 MBTB52 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
7 Sobic.010G051600 - -
8 Sobic.009G047033 - -
9 Sobic.001G423633 - -
10 Sobic.007G072200 - -
11 Sobic.001G524900 ribosomal protein L5, putative, expressed K02931: RP-L5, MRPL5, large subunit ribosomal protein L5
12 Sobic.001G494350 - -
13 Sobic.003G339400 RING-H2 finger protein ATL5G, putative, expressed -
14 Sobic.003G157800 - -
15 Sobic.005G219900 NB-ARC domain containing protein, expressed -
16 Sobic.005G106900 expressed protein K17757: ATP-dependent NAD(P)H-hydrate dehydratase
17 Sobic.009G240300 chloroplast unusual positioning protein, putative, expressed -
18 Sobic.003G092150 - -
19 Sobic.001G437600 - -
20 Sobic.005G201100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@kinesin motor domain containing protein, putative, expressed K10406: kinesin family member C2/C3


Gene co-expression network
sample Sobic009G037600 Sobic009G037600 Sobic002G076450 Sobic002G076450 Sobic009G037600--Sobic002G076450 Sobic005G040950 Sobic005G040950 Sobic009G037600--Sobic005G040950 Sobic010G051900 Sobic010G051900 Sobic009G037600--Sobic010G051900 Sobic003G289300 Sobic003G289300 Sobic009G037600--Sobic003G289300 Sobic008G119100 Sobic008G119100 Sobic009G037600--Sobic008G119100 Sobic001G241500 Sobic001G241500 Sobic009G037600--Sobic001G241500 Sobic010G051600 Sobic010G051600 Sobic009G037600--Sobic010G051600 Sobic009G047033 Sobic009G047033 Sobic009G037600--Sobic009G047033 Sobic001G423633 Sobic001G423633 Sobic009G037600--Sobic001G423633 Sobic002G076450--Sobic008G119100 Sobic002G076450--Sobic010G051900 Sobic002G076450--Sobic009G047033 Sobic005G201100 Sobic005G201100 Sobic002G076450--Sobic005G201100 Sobic001G524900 Sobic001G524900 Sobic002G076450--Sobic001G524900 Sobic002G076450--Sobic005G040950 Sobic006G128450 Sobic006G128450 Sobic002G076450--Sobic006G128450 Sobic003G092150 Sobic003G092150 Sobic002G076450--Sobic003G092150 Sobic002G076450--Sobic003G289300 Sobic005G040950--Sobic003G289300 Sobic003G339400 Sobic003G339400 Sobic005G040950--Sobic003G339400 Sobic005G040950--Sobic010G051900 Sobic001G437600 Sobic001G437600 Sobic005G040950--Sobic001G437600 Sobic005G040950--Sobic001G241500 Sobic007G119400 Sobic007G119400 Sobic005G040950--Sobic007G119400 Sobic002G076200 Sobic002G076200 Sobic005G040950--Sobic002G076200 Sobic005G219800 Sobic005G219800 Sobic005G040950--Sobic005G219800 Sobic001G494350 Sobic001G494350 Sobic005G040950--Sobic001G494350 Sobic010G051900--Sobic005G040950 Sobic010G051900--Sobic008G119100 Sobic010G051900--Sobic002G076450 Sobic010G051900--Sobic009G047033 Sobic010G051900--Sobic010G051600 Sobic010G051900--Sobic003G289300 Sobic010G051900--Sobic001G241500 Sobic003G157800 Sobic003G157800 Sobic010G051900--Sobic003G157800 Sobic010G051900--Sobic001G524900 Sobic003G289300--Sobic005G040950 Sobic003G289300--Sobic003G339400 Sobic003G289300--Sobic007G119400 Sobic003G289300--Sobic001G437600 Sobic003G289300--Sobic005G219800 Sobic003G289300--Sobic001G241500 Sobic003G289300--Sobic002G076200 Sobic009G258200 Sobic009G258200 Sobic003G289300--Sobic009G258200 Sobic003G289300--Sobic010G051900 Sobic008G119100--Sobic002G076450 Sobic008G119100--Sobic010G051900 Sobic008G119100--Sobic001G524900 Sobic001G367900 Sobic001G367900 Sobic008G119100--Sobic001G367900 Sobic003G331200 Sobic003G331200 Sobic008G119100--Sobic003G331200 Sobic008G119100--Sobic003G092150 Sobic008G119100--Sobic005G040950 Sobic008G119100--Sobic009G047033 Sobic007G226000 Sobic007G226000 Sobic008G119100--Sobic007G226000 Sobic001G241500--Sobic005G040950 Sobic001G241500--Sobic003G289300 Sobic007G072200 Sobic007G072200 Sobic001G241500--Sobic007G072200 Sobic001G241500--Sobic010G051900 Sobic001G241500--Sobic003G339400 Sobic001G241500--Sobic001G494350 Sobic005G106900 Sobic005G106900 Sobic001G241500--Sobic005G106900 Sobic001G241500--Sobic003G157800 Sobic005G219900 Sobic005G219900 Sobic001G241500--Sobic005G219900 Sobic010G051600--Sobic009G047033 Sobic010G051600--Sobic001G437600 Sobic010G051600--Sobic010G051900 Sobic010G051600--Sobic002G076200 Sobic010G051600--Sobic005G040950 Sobic010G051600--Sobic005G106900 Sobic007G185000 Sobic007G185000 Sobic010G051600--Sobic007G185000 Sobic010G010100 Sobic010G010100 Sobic010G051600--Sobic010G010100 Sobic005G059300 Sobic005G059300 Sobic010G051600--Sobic005G059300 Sobic009G047033--Sobic010G051600 Sobic009G047033--Sobic010G051900 Sobic003G091900 Sobic003G091900 Sobic009G047033--Sobic003G091900 Sobic009G047033--Sobic007G185000 Sobic009G047033--Sobic002G076450 Sobic004G343733 Sobic004G343733 Sobic009G047033--Sobic004G343733 Sobic003G308900 Sobic003G308900 Sobic009G047033--Sobic003G308900 Sobic010G213100 Sobic010G213100 Sobic009G047033--Sobic010G213100 Sobic009G047033--Sobic003G092150 Sobic001G423633--Sobic008G119100 Sobic001G423633--Sobic002G076450 Sobic001G423633--Sobic009G037600 Sobic002G015950 Sobic002G015950 Sobic001G423633--Sobic002G015950 Sobic001G423633--Sobic010G051900 Sobic001G423633--Sobic003G092150 Sobic006G049000 Sobic006G049000 Sobic001G423633--Sobic006G049000 Sobic006G241000 Sobic006G241000 Sobic001G423633--Sobic006G241000 Sobic001G423633--Sobic003G331200
Octagon: transcription factors


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