Gene annotation
Transcriptome id Sobic.009G037800.1,Sobic.009G037800.2,Sobic.009G037800.3
Synonym Sb09g003230
Functional annotation phosphoglycerate mutase, putative, expressed
UniProt C5YZN4
Pfam PF00300
Panther DB PTHR23029 PTHR23029:SF18
NCBI CDD KOG0235; Phosphoglycerate mutase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G05170 : Phosphoglycerate mutase family protein
RAP-DB (Rice) LOC_Os05g04960.1 : phosphoglycerate mutase, putative, expressed
MaizeGDB (Corn) Zm00025a055362 , Zm00025a038119 , Zm00025a050297
Brachypodium PNT71872 , KQK03778 , KQK07623
Barley -
Wheat TraesCS1A02G084500 , TraesCS4A02G353000 , TraesCS1B02G101800 , TraesCS1B02G101800 , TraesCS5D02G519500 , TraesCS1D02G085900 , TraesCS5B02G520300
Populus -


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cDNA sequences
Sobic.009G037800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G233400 Protein dihydroflavonol-4-reductase DFR (Os)(PubMedID : 27208977)@dihydroflavonol-4-reductase, putative, expressed -
2 Sobic.007G011200 DNA binding protein, putative, expressed -
3 Sobic.007G140900 similar to Putative uncharacterized protein(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.33 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
4 Sobic.002G068800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@galactosyltransferase family protein, putative, expressed -
5 Sobic.001G316900 bZIP family transcription factor, putative, expressed -
6 Sobic.001G370600 expressed protein -
7 Sobic.006G210300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
8 Sobic.002G197600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lg.2 - DUF26 kinases have homology to DUF26 containing loci, expressed -
9 Sobic.001G157400 Class III HD ZIP family protein(PubMedID : 23915383)@START domain containing protein, expressed K09338: homeobox-leucine zipper protein
10 Sobic.007G160200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@mitochondrial carrier protein, putative, expressed K15104: SLC25A11, solute carrier family 25 (mitochondrial oxoglutarate transporter), member 11
11 Sobic.001G075800 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
12 Sobic.003G131500 VQ domain containing protein, putative, expressed -
13 Sobic.004G244100 glycosyl transferase 8 domain containing protein, putative, expressed -
14 Sobic.004G281200 chitin-inducible gibberellin-responsive protein 2, putative, expressed -
15 Sobic.004G273200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
16 Sobic.006G078300 - -
17 Sobic.009G170100 DUF640 domain containing protein, putative, expressed -
18 Sobic.001G525400 receptor-like protein kinase At3g46290 precursor, putative, expressed -
19 Sobic.001G436000 expressed protein -
20 Sobic.002G276400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic009G037800 Sobic009G037800 Sobic010G233400 Sobic010G233400 Sobic009G037800--Sobic010G233400 Sobic007G011200 Sobic007G011200 Sobic009G037800--Sobic007G011200 Sobic007G140900 Sobic007G140900 Sobic009G037800--Sobic007G140900 Sobic002G068800 Sobic002G068800 Sobic009G037800--Sobic002G068800 Sobic001G316900 Sobic001G316900 Sobic009G037800--Sobic001G316900 Sobic001G370600 Sobic001G370600 Sobic009G037800--Sobic001G370600 Sobic006G210300 Sobic006G210300 Sobic009G037800--Sobic006G210300 Sobic002G197600 Sobic002G197600 Sobic009G037800--Sobic002G197600 Sobic001G157400 Sobic001G157400 Sobic009G037800--Sobic001G157400 Sobic010G233400--Sobic001G157400 Sobic001G050800 Sobic001G050800 Sobic010G233400--Sobic001G050800 Sobic001G075800 Sobic001G075800 Sobic010G233400--Sobic001G075800 Sobic003G131500 Sobic003G131500 Sobic010G233400--Sobic003G131500 Sobic010G233400--Sobic002G197600 Sobic010G233400--Sobic009G037800 Sobic004G244100 Sobic004G244100 Sobic010G233400--Sobic004G244100 Sobic009G170100 Sobic009G170100 Sobic010G233400--Sobic009G170100 Sobic003G087100 Sobic003G087100 Sobic010G233400--Sobic003G087100 Sobic007G011200--Sobic009G037800 Sobic004G086800 Sobic004G086800 Sobic007G011200--Sobic004G086800 Sobic007G011200--Sobic006G210300 Sobic004G323600 Sobic004G323600 Sobic007G011200--Sobic004G323600 Sobic002G207300 Sobic002G207300 Sobic007G011200--Sobic002G207300 Sobic002G184600 Sobic002G184600 Sobic007G011200--Sobic002G184600 Sobic002G323900 Sobic002G323900 Sobic007G011200--Sobic002G323900 Sobic002G418900 Sobic002G418900 Sobic007G011200--Sobic002G418900 Sobic003G416500 Sobic003G416500 Sobic007G011200--Sobic003G416500 Sobic009G195800 Sobic009G195800 Sobic007G140900--Sobic009G195800 Sobic007G160200 Sobic007G160200 Sobic007G140900--Sobic007G160200 Sobic007G140900--Sobic009G037800 Sobic003G238000 Sobic003G238000 Sobic007G140900--Sobic003G238000 Sobic001G436000 Sobic001G436000 Sobic007G140900--Sobic001G436000 Sobic007G140900--Sobic010G233400 Sobic001G082900 Sobic001G082900 Sobic007G140900--Sobic001G082900 Sobic001G523200 Sobic001G523200 Sobic007G140900--Sobic001G523200 Sobic004G283300 Sobic004G283300 Sobic007G140900--Sobic004G283300 Sobic001G063600 Sobic001G063600 Sobic002G068800--Sobic001G063600 Sobic002G068800--Sobic001G157400 Sobic002G068800--Sobic001G050800 Sobic002G068800--Sobic009G170100 Sobic001G081600 Sobic001G081600 Sobic002G068800--Sobic001G081600 Sobic002G068800--Sobic002G197600 Sobic010G272101 Sobic010G272101 Sobic002G068800--Sobic010G272101 Sobic001G476400 Sobic001G476400 Sobic002G068800--Sobic001G476400 Sobic004G281200 Sobic004G281200 Sobic002G068800--Sobic004G281200 Sobic003G144200 Sobic003G144200 Sobic001G316900--Sobic003G144200 Sobic001G061900 Sobic001G061900 Sobic001G316900--Sobic001G061900 Sobic003G017200 Sobic003G017200 Sobic001G316900--Sobic003G017200 Sobic001G316900--Sobic009G170100 Sobic006G110000 Sobic006G110000 Sobic001G316900--Sobic006G110000 Sobic001G316900--Sobic002G068800 Sobic001G316900--Sobic001G157400 Sobic009G159900 Sobic009G159900 Sobic001G316900--Sobic009G159900 Sobic001G316900--Sobic009G037800 Sobic006G273800 Sobic006G273800 Sobic001G370600--Sobic006G273800 Sobic001G370600--Sobic002G197600 Sobic007G051800 Sobic007G051800 Sobic001G370600--Sobic007G051800 Sobic002G367900 Sobic002G367900 Sobic001G370600--Sobic002G367900 Sobic003G425200 Sobic003G425200 Sobic001G370600--Sobic003G425200 Sobic001G370600--Sobic006G210300 Sobic003G341100 Sobic003G341100 Sobic001G370600--Sobic003G341100 Sobic007G011000 Sobic007G011000 Sobic001G370600--Sobic007G011000 Sobic007G201100 Sobic007G201100 Sobic001G370600--Sobic007G201100 Sobic002G217100 Sobic002G217100 Sobic006G210300--Sobic002G217100 Sobic006G210300--Sobic004G281200 Sobic006G210300--Sobic001G081600 Sobic006G210300--Sobic002G197600 Sobic001G462800 Sobic001G462800 Sobic006G210300--Sobic001G462800 Sobic006G210300--Sobic002G367900 Sobic010G016500 Sobic010G016500 Sobic006G210300--Sobic010G016500 Sobic006G210300--Sobic004G244100 Sobic006G184400 Sobic006G184400 Sobic006G210300--Sobic006G184400 Sobic002G197600--Sobic001G081600 Sobic002G197600--Sobic002G217100 Sobic002G197600--Sobic001G462800 Sobic002G197600--Sobic004G281200 Sobic002G197600--Sobic006G210300 Sobic002G197600--Sobic002G367900 Sobic008G036000 Sobic008G036000 Sobic002G197600--Sobic008G036000 Sobic002G197600--Sobic004G244100 Sobic004G176900 Sobic004G176900 Sobic002G197600--Sobic004G176900 Sobic001G157400--Sobic001G050800 Sobic002G023900 Sobic002G023900 Sobic001G157400--Sobic002G023900 Sobic006G026400 Sobic006G026400 Sobic001G157400--Sobic006G026400 Sobic001G157400--Sobic002G068800 Sobic003G278700 Sobic003G278700 Sobic001G157400--Sobic003G278700 Sobic003G227600 Sobic003G227600 Sobic001G157400--Sobic003G227600 Sobic006G032200 Sobic006G032200 Sobic001G157400--Sobic006G032200 Sobic006G078300 Sobic006G078300 Sobic001G157400--Sobic006G078300 Sobic001G157400--Sobic009G170100
Octagon: transcription factors


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