Gene annotation
Transcriptome id Sobic.007G011200.1
Synonym Sb07g001090
Functional annotation DNA binding protein, putative, expressed
UniProt C5YLW8
Pfam PF02485
Panther DB PTHR31042 PTHR31042:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0008375acetylglucosaminyltransferase activity


Orthologs (automatic annotation)
TAIR AT1G10280 : Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
RAP-DB (Rice) LOC_Os08g01890.1 : DNA binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a040190
Brachypodium KQJ94823
Barley HORVU7Hr1G076790.1 , HORVU7Hr1G076790.2 , HORVU7Hr1G076790.3 , HORVU7Hr1G076790.6 , HORVU7Hr1G076790.7 , HORVU7Hr1G076790.4 , HORVU7Hr1G076790.5
Wheat TraesCS7D02G317600 , TraesCS7B02G221700 , TraesCS7A02G320800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G037800 phosphoglycerate mutase, putative, expressed -
2 Sobic.004G086800 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
3 Sobic.006G210300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
4 Sobic.004G323600 "SMG1(Ortholog in rice:Duan et al., 2014)"(PubMedID : 31659892)@STE_MEK_ste7_MAP2K.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K13413: mitogen-activated protein kinase kinase 4/5
5 Sobic.002G207300 tetraspanin family protein, putative, expressed -
6 Sobic.002G184600 uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed K01087: trehalose 6-phosphate phosphatase
7 Sobic.002G323900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PRAS-rich protein, putative, expressed -
8 Sobic.002G418900 expressed protein -
9 Sobic.003G416500 SRC2 protein, putative, expressed -
10 Sobic.001G370600 expressed protein -
11 Sobic.002G367900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aspartic proteinase nepenthesin precursor, putative, expressed -
12 Sobic.009G028500 zinc finger family protein, putative, expressed -
13 Sobic.007G124100 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
14 Sobic.001G525400 receptor-like protein kinase At3g46290 precursor, putative, expressed -
15 Sobic.007G143400 tetraspanin family protein, putative, expressed -
16 Sobic.004G244100 glycosyl transferase 8 domain containing protein, putative, expressed -
17 Sobic.003G131500 VQ domain containing protein, putative, expressed -
18 Sobic.004G065900 CML (Calmodulin like protein) with WRKY-binding domain(PubMedID : 31721651)@transcription factor(PubMedID : 30367619)@WRKY71, expressed -
19 Sobic.004G331800 alginate regulatory protein AlgP, putative, expressed -
20 Sobic.001G489500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic007G011200 Sobic007G011200 Sobic009G037800 Sobic009G037800 Sobic007G011200--Sobic009G037800 Sobic004G086800 Sobic004G086800 Sobic007G011200--Sobic004G086800 Sobic006G210300 Sobic006G210300 Sobic007G011200--Sobic006G210300 Sobic004G323600 Sobic004G323600 Sobic007G011200--Sobic004G323600 Sobic002G207300 Sobic002G207300 Sobic007G011200--Sobic002G207300 Sobic002G184600 Sobic002G184600 Sobic007G011200--Sobic002G184600 Sobic002G323900 Sobic002G323900 Sobic007G011200--Sobic002G323900 Sobic002G418900 Sobic002G418900 Sobic007G011200--Sobic002G418900 Sobic003G416500 Sobic003G416500 Sobic007G011200--Sobic003G416500 Sobic010G233400 Sobic010G233400 Sobic009G037800--Sobic010G233400 Sobic009G037800--Sobic007G011200 Sobic007G140900 Sobic007G140900 Sobic009G037800--Sobic007G140900 Sobic002G068800 Sobic002G068800 Sobic009G037800--Sobic002G068800 Sobic001G316900 Sobic001G316900 Sobic009G037800--Sobic001G316900 Sobic001G370600 Sobic001G370600 Sobic009G037800--Sobic001G370600 Sobic009G037800--Sobic006G210300 Sobic002G197600 Sobic002G197600 Sobic009G037800--Sobic002G197600 Sobic001G157400 Sobic001G157400 Sobic009G037800--Sobic001G157400 Sobic009G010400 Sobic009G010400 Sobic004G086800--Sobic009G010400 Sobic004G086800--Sobic003G416500 Sobic006G259000 Sobic006G259000 Sobic004G086800--Sobic006G259000 Sobic004G065900 Sobic004G065900 Sobic004G086800--Sobic004G065900 Sobic004G086800--Sobic002G323900 Sobic001G489500 Sobic001G489500 Sobic004G086800--Sobic001G489500 Sobic010G102000 Sobic010G102000 Sobic004G086800--Sobic010G102000 Sobic002G138700 Sobic002G138700 Sobic004G086800--Sobic002G138700 Sobic001G287600 Sobic001G287600 Sobic004G086800--Sobic001G287600 Sobic002G217100 Sobic002G217100 Sobic006G210300--Sobic002G217100 Sobic004G281200 Sobic004G281200 Sobic006G210300--Sobic004G281200 Sobic001G081600 Sobic001G081600 Sobic006G210300--Sobic001G081600 Sobic006G210300--Sobic002G197600 Sobic001G462800 Sobic001G462800 Sobic006G210300--Sobic001G462800 Sobic002G367900 Sobic002G367900 Sobic006G210300--Sobic002G367900 Sobic010G016500 Sobic010G016500 Sobic006G210300--Sobic010G016500 Sobic004G244100 Sobic004G244100 Sobic006G210300--Sobic004G244100 Sobic006G184400 Sobic006G184400 Sobic006G210300--Sobic006G184400 Sobic004G278000 Sobic004G278000 Sobic004G323600--Sobic004G278000 Sobic004G323600--Sobic004G086800 Sobic010G178800 Sobic010G178800 Sobic004G323600--Sobic010G178800 Sobic004G259500 Sobic004G259500 Sobic004G323600--Sobic004G259500 Sobic003G253500 Sobic003G253500 Sobic004G323600--Sobic003G253500 Sobic008G129000 Sobic008G129000 Sobic004G323600--Sobic008G129000 Sobic007G201100 Sobic007G201100 Sobic004G323600--Sobic007G201100 Sobic004G323600--Sobic003G416500 Sobic004G268900 Sobic004G268900 Sobic004G323600--Sobic004G268900 Sobic002G207300--Sobic004G065900 Sobic002G207300--Sobic002G367900 Sobic002G207300--Sobic007G201100 Sobic006G146500 Sobic006G146500 Sobic002G207300--Sobic006G146500 Sobic001G118900 Sobic001G118900 Sobic002G207300--Sobic001G118900 Sobic003G425200 Sobic003G425200 Sobic002G207300--Sobic003G425200 Sobic002G294600 Sobic002G294600 Sobic002G207300--Sobic002G294600 Sobic001G410100 Sobic001G410100 Sobic002G207300--Sobic001G410100 Sobic001G095700 Sobic001G095700 Sobic002G207300--Sobic001G095700 Sobic002G417500 Sobic002G417500 Sobic002G184600--Sobic002G417500 Sobic007G160200 Sobic007G160200 Sobic002G184600--Sobic007G160200 Sobic002G184600--Sobic007G011200 Sobic004G331800 Sobic004G331800 Sobic002G184600--Sobic004G331800 Sobic003G290100 Sobic003G290100 Sobic002G184600--Sobic003G290100 Sobic007G220700 Sobic007G220700 Sobic002G184600--Sobic007G220700 Sobic003G375900 Sobic003G375900 Sobic002G184600--Sobic003G375900 Sobic001G161200 Sobic001G161200 Sobic002G184600--Sobic001G161200 Sobic003G422700 Sobic003G422700 Sobic002G184600--Sobic003G422700 Sobic002G323900--Sobic006G259000 Sobic002G323900--Sobic003G416500 Sobic007G077100 Sobic007G077100 Sobic002G323900--Sobic007G077100 Sobic002G323900--Sobic001G489500 Sobic010G023200 Sobic010G023200 Sobic002G323900--Sobic010G023200 Sobic002G323900--Sobic004G086800 Sobic002G269300 Sobic002G269300 Sobic002G323900--Sobic002G269300 Sobic001G064900 Sobic001G064900 Sobic002G323900--Sobic001G064900 Sobic002G323900--Sobic009G010400 Sobic004G006500 Sobic004G006500 Sobic002G418900--Sobic004G006500 Sobic002G185200 Sobic002G185200 Sobic002G418900--Sobic002G185200 Sobic002G418900--Sobic001G118900 Sobic002G418900--Sobic004G065900 Sobic009G028500 Sobic009G028500 Sobic002G418900--Sobic009G028500 Sobic002G418900--Sobic002G367900 Sobic002G418900--Sobic002G207300 Sobic007G143400 Sobic007G143400 Sobic002G418900--Sobic007G143400 Sobic001G131200 Sobic001G131200 Sobic002G418900--Sobic001G131200 Sobic003G416500--Sobic001G489500 Sobic003G416500--Sobic010G023200 Sobic003G416500--Sobic006G259000 Sobic003G416500--Sobic007G077100 Sobic009G217500 Sobic009G217500 Sobic003G416500--Sobic009G217500 Sobic006G273800 Sobic006G273800 Sobic003G416500--Sobic006G273800 Sobic009G120800 Sobic009G120800 Sobic003G416500--Sobic009G120800 Sobic003G416500--Sobic002G323900 Sobic010G105300 Sobic010G105300 Sobic003G416500--Sobic010G105300
Octagon: transcription factors


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