Gene annotation
Transcriptome id Sobic.009G057000.2,Sobic.009G057000.3
Synonym Sb09g004820
Functional annotation basic helix-loop-helix, putative, expressed
UniProt C5Z0Z9
Pfam PF00010
Panther DB PTHR12565 PTHR12565:SF130
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G40200 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os01g06640.1,LOC_Os01g06640.2 : basic helix-loop-helix, putative, expressed
MaizeGDB (Corn) Zm00025a042920
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G200300 no apical meristem protein, putative, expressed -
2 Sobic.001G341550 - -
3 Sobic.002G128300 MLA6 protein, putative, expressed K13457: RPM1, disease resistance protein RPM1
4 Sobic.001G133532 - -
5 Sobic.001G243500 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
6 Sobic.009G158700 - -
7 Sobic.001G243600 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
8 Sobic.004G273400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oligopeptide transporter, putative, expressed -
9 Sobic.001G100700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@PIII5 - Proteinase inhibitor II family protein precursor, expressed -
10 Sobic.009G106800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
11 Sobic.005G213200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein kinase family protein, putative, expressed -
12 Sobic.007G058300 AP2 domain containing protein, expressed -
13 Sobic.004G111800 VQ domain containing protein, putative, expressed -
14 Sobic.001G444400 peroxidase precursor, putative, expressed K00430: peroxidase
15 Sobic.001G331301 - -
16 Sobic.010G110266 - -
17 Sobic.002G346100 - -
18 Sobic.001G213000 expressed protein -
19 Sobic.008G044500 zinc finger superfamily protein("PubMedID : 26759170,PubMedID : 24597475")@expressed protein -
20 Sobic.006G153100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -


Gene co-expression network
sample Sobic009G057000 Sobic009G057000 Sobic002G200300 Sobic002G200300 Sobic009G057000--Sobic002G200300 Sobic001G341550 Sobic001G341550 Sobic009G057000--Sobic001G341550 Sobic002G128300 Sobic002G128300 Sobic009G057000--Sobic002G128300 Sobic001G133532 Sobic001G133532 Sobic009G057000--Sobic001G133532 Sobic001G243500 Sobic001G243500 Sobic009G057000--Sobic001G243500 Sobic009G158700 Sobic009G158700 Sobic009G057000--Sobic009G158700 Sobic001G243600 Sobic001G243600 Sobic009G057000--Sobic001G243600 Sobic004G273400 Sobic004G273400 Sobic009G057000--Sobic004G273400 Sobic001G100700 Sobic001G100700 Sobic009G057000--Sobic001G100700 Sobic002G200300--Sobic001G341550 Sobic002G200300--Sobic001G243600 Sobic002G200300--Sobic001G243500 Sobic005G213200 Sobic005G213200 Sobic002G200300--Sobic005G213200 Sobic002G200300--Sobic009G057000 Sobic002G200300--Sobic001G100700 Sobic002G200300--Sobic004G273400 Sobic002G200300--Sobic002G128300 Sobic001G444400 Sobic001G444400 Sobic002G200300--Sobic001G444400 Sobic001G341550--Sobic002G200300 Sobic001G341550--Sobic001G243600 Sobic004G071650 Sobic004G071650 Sobic001G341550--Sobic004G071650 Sobic008G060050 Sobic008G060050 Sobic001G341550--Sobic008G060050 Sobic001G341550--Sobic004G273400 Sobic001G348700 Sobic001G348700 Sobic001G341550--Sobic001G348700 Sobic001G341550--Sobic009G057000 Sobic001G341550--Sobic001G100700 Sobic009G120000 Sobic009G120000 Sobic001G341550--Sobic009G120000 Sobic006G153100 Sobic006G153100 Sobic002G128300--Sobic006G153100 Sobic005G179200 Sobic005G179200 Sobic002G128300--Sobic005G179200 Sobic002G128300--Sobic001G444400 Sobic002G128300--Sobic001G243600 Sobic002G128300--Sobic009G120000 Sobic004G111800 Sobic004G111800 Sobic002G128300--Sobic004G111800 Sobic003G236450 Sobic003G236450 Sobic002G128300--Sobic003G236450 Sobic001G063000 Sobic001G063000 Sobic002G128300--Sobic001G063000 Sobic007G141500 Sobic007G141500 Sobic002G128300--Sobic007G141500 Sobic001G133532--Sobic009G057000 Sobic001G133532--Sobic009G158700 Sobic001G133532--Sobic002G128300 Sobic008G044500 Sobic008G044500 Sobic001G133532--Sobic008G044500 Sobic001G133532--Sobic001G243600 Sobic009G106800 Sobic009G106800 Sobic001G133532--Sobic009G106800 Sobic001G133532--Sobic001G444400 Sobic004G189301 Sobic004G189301 Sobic001G133532--Sobic004G189301 Sobic003G364100 Sobic003G364100 Sobic001G133532--Sobic003G364100 Sobic001G243500--Sobic004G273400 Sobic001G243500--Sobic001G243600 Sobic001G243500--Sobic001G100700 Sobic001G243500--Sobic005G213200 Sobic002G346100 Sobic002G346100 Sobic001G243500--Sobic002G346100 Sobic001G243500--Sobic009G106800 Sobic001G243400 Sobic001G243400 Sobic001G243500--Sobic001G243400 Sobic001G243500--Sobic002G200300 Sobic001G331301 Sobic001G331301 Sobic001G243500--Sobic001G331301 Sobic009G158700--Sobic001G243500 Sobic009G158700--Sobic009G106800 Sobic009G158700--Sobic008G044500 Sobic009G158700--Sobic005G213200 Sobic009G158700--Sobic001G243600 Sobic009G158700--Sobic001G100700 Sobic009G158700--Sobic004G273400 Sobic006G277550 Sobic006G277550 Sobic009G158700--Sobic006G277550 Sobic001G335600 Sobic001G335600 Sobic009G158700--Sobic001G335600 Sobic001G243600--Sobic004G273400 Sobic001G243600--Sobic005G213200 Sobic001G243600--Sobic001G243500 Sobic001G243600--Sobic001G100700 Sobic001G243600--Sobic009G120000 Sobic002G375400 Sobic002G375400 Sobic001G243600--Sobic002G375400 Sobic001G243600--Sobic009G106800 Sobic005G084600 Sobic005G084600 Sobic001G243600--Sobic005G084600 Sobic001G243600--Sobic001G444400 Sobic004G273400--Sobic001G243600 Sobic004G273400--Sobic001G243500 Sobic004G273400--Sobic001G100700 Sobic004G273400--Sobic005G213200 Sobic004G273400--Sobic009G106800 Sobic004G273400--Sobic001G444400 Sobic004G273400--Sobic006G153100 Sobic004G333150 Sobic004G333150 Sobic004G273400--Sobic004G333150 Sobic004G273400--Sobic007G141500 Sobic001G100700--Sobic005G213200 Sobic001G100700--Sobic001G243500 Sobic001G100700--Sobic001G444400 Sobic001G100700--Sobic001G243600 Sobic001G100700--Sobic009G106800 Sobic001G100700--Sobic009G120000 Sobic001G100700--Sobic004G273400 Sobic010G209900 Sobic010G209900 Sobic001G100700--Sobic010G209900 Sobic003G129000 Sobic003G129000 Sobic001G100700--Sobic003G129000
Octagon: transcription factors


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