Gene annotation
Transcriptome id Sobic.009G100900.1
Synonym Sb09g015920
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)" (PubMedID : 27586543)
membrane associated DUF588 domain containing protein, putative, expressed
UniProt C5YW81
Pfam PF04535
Panther DB PTHR11615 PTHR11615:SF144
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G38480 : Uncharacterised protein family (UPF0497)
RAP-DB (Rice) LOC_Os05g27790.1 : membrane associated DUF588 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a034706 , Zm00025a043460 , Zm00025a002046
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G145200 membrane attack complex component/perforin/complement C9, putative, expressed -
2 Sobic.002G353400 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
3 Sobic.009G241700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed -
4 Sobic.002G272900 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
5 Sobic.004G301400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein K08331: autophagy-related protein 13
6 Sobic.006G192500 CAMK_CAMK_like.27 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
7 Sobic.010G107100 expressed protein -
8 Sobic.001G403700 mitochondrial carrier protein, putative, expressed K15113: SLC25A28_37, solute carrier family 25 (mitochondrial iron transporter), member 28/37
9 Sobic.010G041700 B-box (BBX) protein(PubMedID : 30626335)@B-box zinc finger family protein, putative, expressed -
10 Sobic.001G483400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lipoxygenase protein, putative, expressed K00454: lipoxygenase
11 Sobic.010G245800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
12 Sobic.001G012800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@regulatory protein, putative, expressed -
13 Sobic.008G097401 - -
14 Sobic.001G399100 peroxisomal biogenesis factor 11, putative, expressed -
15 Sobic.002G292600 phytoene synthase(PubMedID : 22672222)@carotenoid biosynthesi(PubMedID : 18162592)@PSY3 expression influences root carotenogenesis and defines a potential bottleneck upstream of NCED(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed K02291: 15-cis-phytoene synthase
16 Sobic.010G175200 low-affinity cation transporter, putative, expressed -
17 Sobic.001G028000 expressed protein -
18 Sobic.005G105300 expressed protein -
19 Sobic.010G008100 RNA recognition motif containing protein, putative, expressed -
20 Sobic.004G173500 CAMK_CAMK_like.13 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2


Gene co-expression network
sample Sobic009G100900 Sobic009G100900 Sobic004G145200 Sobic004G145200 Sobic009G100900--Sobic004G145200 Sobic002G353400 Sobic002G353400 Sobic009G100900--Sobic002G353400 Sobic009G241700 Sobic009G241700 Sobic009G100900--Sobic009G241700 Sobic002G272900 Sobic002G272900 Sobic009G100900--Sobic002G272900 Sobic004G301400 Sobic004G301400 Sobic009G100900--Sobic004G301400 Sobic006G192500 Sobic006G192500 Sobic009G100900--Sobic006G192500 Sobic010G107100 Sobic010G107100 Sobic009G100900--Sobic010G107100 Sobic001G403700 Sobic001G403700 Sobic009G100900--Sobic001G403700 Sobic010G041700 Sobic010G041700 Sobic009G100900--Sobic010G041700 Sobic010G228000 Sobic010G228000 Sobic004G145200--Sobic010G228000 Sobic008G016900 Sobic008G016900 Sobic004G145200--Sobic008G016900 Sobic007G188100 Sobic007G188100 Sobic004G145200--Sobic007G188100 Sobic006G076201 Sobic006G076201 Sobic004G145200--Sobic006G076201 Sobic010G062800 Sobic010G062800 Sobic004G145200--Sobic010G062800 Sobic002G362900 Sobic002G362900 Sobic004G145200--Sobic002G362900 Sobic001G012800 Sobic001G012800 Sobic004G145200--Sobic001G012800 Sobic002G242500 Sobic002G242500 Sobic004G145200--Sobic002G242500 Sobic002G118600 Sobic002G118600 Sobic004G145200--Sobic002G118600 Sobic002G374100 Sobic002G374100 Sobic002G353400--Sobic002G374100 Sobic002G343500 Sobic002G343500 Sobic002G353400--Sobic002G343500 Sobic002G353400--Sobic007G188100 Sobic001G341600 Sobic001G341600 Sobic002G353400--Sobic001G341600 Sobic001G516600 Sobic001G516600 Sobic002G353400--Sobic001G516600 Sobic009G217600 Sobic009G217600 Sobic002G353400--Sobic009G217600 Sobic001G525400 Sobic001G525400 Sobic002G353400--Sobic001G525400 Sobic002G294700 Sobic002G294700 Sobic002G353400--Sobic002G294700 Sobic009G027900 Sobic009G027900 Sobic002G353400--Sobic009G027900 Sobic009G241700--Sobic010G107100 Sobic005G211400 Sobic005G211400 Sobic009G241700--Sobic005G211400 Sobic004G058000 Sobic004G058000 Sobic009G241700--Sobic004G058000 Sobic004G158901 Sobic004G158901 Sobic009G241700--Sobic004G158901 Sobic007G098400 Sobic007G098400 Sobic009G241700--Sobic007G098400 Sobic009G241700--Sobic001G403700 Sobic001G399100 Sobic001G399100 Sobic009G241700--Sobic001G399100 Sobic009G241700--Sobic001G012800 Sobic009G111600 Sobic009G111600 Sobic009G241700--Sobic009G111600 Sobic007G124301 Sobic007G124301 Sobic002G272900--Sobic007G124301 Sobic002G272900--Sobic001G516600 Sobic001G483400 Sobic001G483400 Sobic002G272900--Sobic001G483400 Sobic001G389000 Sobic001G389000 Sobic002G272900--Sobic001G389000 Sobic010G213400 Sobic010G213400 Sobic002G272900--Sobic010G213400 Sobic003G037800 Sobic003G037800 Sobic002G272900--Sobic003G037800 Sobic009G033700 Sobic009G033700 Sobic002G272900--Sobic009G033700 Sobic007G151100 Sobic007G151100 Sobic002G272900--Sobic007G151100 Sobic003G249800 Sobic003G249800 Sobic002G272900--Sobic003G249800 Sobic003G367451 Sobic003G367451 Sobic004G301400--Sobic003G367451 Sobic004G301400--Sobic009G111600 Sobic001G236300 Sobic001G236300 Sobic004G301400--Sobic001G236300 Sobic002G083266 Sobic002G083266 Sobic004G301400--Sobic002G083266 Sobic004G276100 Sobic004G276100 Sobic004G301400--Sobic004G276100 Sobic008G179500 Sobic008G179500 Sobic004G301400--Sobic008G179500 Sobic004G301400--Sobic001G403700 Sobic004G272800 Sobic004G272800 Sobic004G301400--Sobic004G272800 Sobic004G130900 Sobic004G130900 Sobic004G301400--Sobic004G130900 Sobic006G192500--Sobic001G399100 Sobic005G228000 Sobic005G228000 Sobic006G192500--Sobic005G228000 Sobic006G192500--Sobic002G374100 Sobic006G192500--Sobic010G062800 Sobic001G206400 Sobic001G206400 Sobic006G192500--Sobic001G206400 Sobic010G204300 Sobic010G204300 Sobic006G192500--Sobic010G204300 Sobic001G147200 Sobic001G147200 Sobic006G192500--Sobic001G147200 Sobic002G245800 Sobic002G245800 Sobic006G192500--Sobic002G245800 Sobic006G192500--Sobic010G107100 Sobic010G107100--Sobic001G399100 Sobic010G107100--Sobic004G058000 Sobic005G229700 Sobic005G229700 Sobic010G107100--Sobic005G229700 Sobic009G200700 Sobic009G200700 Sobic010G107100--Sobic009G200700 Sobic003G192100 Sobic003G192100 Sobic010G107100--Sobic003G192100 Sobic009G143400 Sobic009G143400 Sobic010G107100--Sobic009G143400 Sobic002G423300 Sobic002G423300 Sobic010G107100--Sobic002G423300 Sobic010G107100--Sobic009G241700 Sobic006G230500 Sobic006G230500 Sobic010G107100--Sobic006G230500 Sobic001G403700--Sobic009G111600 Sobic004G284500 Sobic004G284500 Sobic001G403700--Sobic004G284500 Sobic002G078400 Sobic002G078400 Sobic001G403700--Sobic002G078400 Sobic006G182100 Sobic006G182100 Sobic001G403700--Sobic006G182100 Sobic002G296300 Sobic002G296300 Sobic001G403700--Sobic002G296300 Sobic003G248600 Sobic003G248600 Sobic001G403700--Sobic003G248600 Sobic008G132800 Sobic008G132800 Sobic001G403700--Sobic008G132800 Sobic002G214900 Sobic002G214900 Sobic001G403700--Sobic002G214900 Sobic001G403700--Sobic010G213400 Sobic009G046600 Sobic009G046600 Sobic010G041700--Sobic009G046600 Sobic005G010200 Sobic005G010200 Sobic010G041700--Sobic005G010200 Sobic006G089300 Sobic006G089300 Sobic010G041700--Sobic006G089300 Sobic010G041700--Sobic007G151100 Sobic010G041700--Sobic002G374100 Sobic009G066800 Sobic009G066800 Sobic010G041700--Sobic009G066800 Sobic009G129000 Sobic009G129000 Sobic010G041700--Sobic009G129000 Sobic010G041700--Sobic001G483400 Sobic010G041700--Sobic002G272900
Octagon: transcription factors


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