Gene annotation
Transcriptome id Sobic.009G110500.2
Synonym Sb09g017890
Functional annotation RING-H2 finger protein, putative, expressed
UniProt A0A1Z5R245
Pfam PF13639
Panther DB PTHR14155
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G72310 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os05g29676.1 : RING-H2 finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a043373
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.009G110500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G048800 expressed protein -
2 Sobic.009G085700 - -
3 Sobic.008G142100 No apical meristem protein, putative, expressed -
4 Sobic.004G258400 aspartic proteinase nepenthesin-2 precursor, putative, expressed -
5 Sobic.009G037200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
6 Sobic.003G206800 DUF538 domain containing protein, putative, expressed -
7 Sobic.001G387000 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
8 Sobic.009G189000 expressed protein -
9 Sobic.003G314500 expressed protein -
10 Sobic.002G041800 gibberellin receptor GID1L2, putative, expressed -
11 Sobic.001G093900 stem-specific protein TSJT1, putative, expressed -
12 Sobic.005G032300 ubiquitin-like protein 5, putative, expressed K13113: UBL5, ubiquitin-like protein 5
13 Sobic.002G411500 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
14 Sobic.002G257100 regulatory protein, putative, expressed -
15 Sobic.001G075000 lectin-like receptor kinase, putative, expressed -
16 Sobic.002G265400 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed K13691: pathogen-inducible salicylic acid glucosyltransferase
17 Sobic.002G193400 lipase, putative, expressed K18875: enhanced disease susceptibility 1 protein
18 Sobic.010G157500 zinc finger protein, putative, expressed -
19 Sobic.001G319100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
20 Sobic.001G182600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GDSL-like lipase/acylhydrolase, putative, expressed -


Gene co-expression network
sample Sobic009G110500 Sobic009G110500 Sobic002G048800 Sobic002G048800 Sobic009G110500--Sobic002G048800 Sobic009G085700 Sobic009G085700 Sobic009G110500--Sobic009G085700 Sobic008G142100 Sobic008G142100 Sobic009G110500--Sobic008G142100 Sobic004G258400 Sobic004G258400 Sobic009G110500--Sobic004G258400 Sobic009G037200 Sobic009G037200 Sobic009G110500--Sobic009G037200 Sobic003G206800 Sobic003G206800 Sobic009G110500--Sobic003G206800 Sobic001G387000 Sobic001G387000 Sobic009G110500--Sobic001G387000 Sobic009G189000 Sobic009G189000 Sobic009G110500--Sobic009G189000 Sobic003G314500 Sobic003G314500 Sobic009G110500--Sobic003G314500 Sobic002G048800--Sobic003G206800 Sobic002G193400 Sobic002G193400 Sobic002G048800--Sobic002G193400 Sobic002G073900 Sobic002G073900 Sobic002G048800--Sobic002G073900 Sobic003G402200 Sobic003G402200 Sobic002G048800--Sobic003G402200 Sobic008G142600 Sobic008G142600 Sobic002G048800--Sobic008G142600 Sobic002G048800--Sobic009G110500 Sobic003G135800 Sobic003G135800 Sobic002G048800--Sobic003G135800 Sobic004G349300 Sobic004G349300 Sobic002G048800--Sobic004G349300 Sobic001G427700 Sobic001G427700 Sobic002G048800--Sobic001G427700 Sobic002G041800 Sobic002G041800 Sobic009G085700--Sobic002G041800 Sobic002G423600 Sobic002G423600 Sobic009G085700--Sobic002G423600 Sobic005G085500 Sobic005G085500 Sobic009G085700--Sobic005G085500 Sobic001G145050 Sobic001G145050 Sobic009G085700--Sobic001G145050 Sobic009G252100 Sobic009G252100 Sobic009G085700--Sobic009G252100 Sobic004G078600 Sobic004G078600 Sobic009G085700--Sobic004G078600 Sobic002G265400 Sobic002G265400 Sobic009G085700--Sobic002G265400 Sobic009G085700--Sobic009G037200 Sobic005G063900 Sobic005G063900 Sobic009G085700--Sobic005G063900 Sobic001G075000 Sobic001G075000 Sobic008G142100--Sobic001G075000 Sobic001G319100 Sobic001G319100 Sobic008G142100--Sobic001G319100 Sobic002G209100 Sobic002G209100 Sobic008G142100--Sobic002G209100 Sobic008G142100--Sobic004G258400 Sobic004G195800 Sobic004G195800 Sobic008G142100--Sobic004G195800 Sobic002G257100 Sobic002G257100 Sobic008G142100--Sobic002G257100 Sobic001G381300 Sobic001G381300 Sobic008G142100--Sobic001G381300 Sobic001G339600 Sobic001G339600 Sobic008G142100--Sobic001G339600 Sobic003G339900 Sobic003G339900 Sobic008G142100--Sobic003G339900 Sobic004G258400--Sobic002G257100 Sobic004G258400--Sobic008G142100 Sobic001G136300 Sobic001G136300 Sobic004G258400--Sobic001G136300 Sobic004G258400--Sobic002G041800 Sobic001G450500 Sobic001G450500 Sobic004G258400--Sobic001G450500 Sobic006G246200 Sobic006G246200 Sobic004G258400--Sobic006G246200 Sobic005G093300 Sobic005G093300 Sobic004G258400--Sobic005G093300 Sobic001G362001 Sobic001G362001 Sobic004G258400--Sobic001G362001 Sobic004G258400--Sobic009G037200 Sobic010G193000 Sobic010G193000 Sobic009G037200--Sobic010G193000 Sobic009G037200--Sobic006G246200 Sobic009G037200--Sobic002G257100 Sobic005G203300 Sobic005G203300 Sobic009G037200--Sobic005G203300 Sobic005G217700 Sobic005G217700 Sobic009G037200--Sobic005G217700 Sobic007G157100 Sobic007G157100 Sobic009G037200--Sobic007G157100 Sobic009G037200--Sobic001G136300 Sobic009G037200--Sobic005G085500 Sobic007G089300 Sobic007G089300 Sobic009G037200--Sobic007G089300 Sobic003G206800--Sobic002G048800 Sobic001G320200 Sobic001G320200 Sobic003G206800--Sobic001G320200 Sobic001G340700 Sobic001G340700 Sobic003G206800--Sobic001G340700 Sobic003G206800--Sobic003G314500 Sobic002G130700 Sobic002G130700 Sobic003G206800--Sobic002G130700 Sobic008G001400 Sobic008G001400 Sobic003G206800--Sobic008G001400 Sobic003G206800--Sobic002G073900 Sobic003G206800--Sobic008G142600 Sobic001G427200 Sobic001G427200 Sobic003G206800--Sobic001G427200 Sobic001G387000--Sobic002G257100 Sobic001G387000--Sobic001G145050 Sobic001G387000--Sobic002G209100 Sobic001G387000--Sobic002G041800 Sobic001G387000--Sobic001G339600 Sobic002G271600 Sobic002G271600 Sobic001G387000--Sobic002G271600 Sobic001G387000--Sobic004G258400 Sobic001G387000--Sobic005G085500 Sobic001G387000--Sobic009G037200 Sobic004G063200 Sobic004G063200 Sobic009G189000--Sobic004G063200 Sobic010G214000 Sobic010G214000 Sobic009G189000--Sobic010G214000 Sobic003G108600 Sobic003G108600 Sobic009G189000--Sobic003G108600 Sobic001G404500 Sobic001G404500 Sobic009G189000--Sobic001G404500 Sobic009G023401 Sobic009G023401 Sobic009G189000--Sobic009G023401 Sobic001G351400 Sobic001G351400 Sobic009G189000--Sobic001G351400 Sobic009G189000--Sobic002G265400 Sobic001G005500 Sobic001G005500 Sobic009G189000--Sobic001G005500 Sobic010G063200 Sobic010G063200 Sobic009G189000--Sobic010G063200 Sobic001G053000 Sobic001G053000 Sobic003G314500--Sobic001G053000 Sobic010G265800 Sobic010G265800 Sobic003G314500--Sobic010G265800 Sobic006G004600 Sobic006G004600 Sobic003G314500--Sobic006G004600 Sobic002G125900 Sobic002G125900 Sobic003G314500--Sobic002G125900 Sobic008G146900 Sobic008G146900 Sobic003G314500--Sobic008G146900 Sobic005G032300 Sobic005G032300 Sobic003G314500--Sobic005G032300 Sobic001G427500 Sobic001G427500 Sobic003G314500--Sobic001G427500 Sobic004G210900 Sobic004G210900 Sobic003G314500--Sobic004G210900 Sobic003G314500--Sobic003G206800
Octagon: transcription factors


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