Gene annotation
Transcriptome id Sobic.009G218200.1
Synonym Sb09g027310
Functional annotation transcription initiation factor IIB, putative, expressed
UniProt C5YUY2
Pfam PF08271 PF00382
Panther DB PTHR11618 PTHR11618:SF24
NCBI CDD KOG1597; Transcription initiation factor TFIIB
KEGG Orthology K03124; TFIIB, GTF2B, SUA7, transcription initiation factor TFIIB
Gene Ontology GO:0017025; TBP-class protein binding GO:0008270zinc ion binding GO:0006355regulation of transcription, DNA-templated GO:0006352DNA-templated transcription, initiation


Orthologs (automatic annotation)
TAIR AT3G10330 : Cyclin-like family protein
RAP-DB (Rice) LOC_Os05g47480.1 : transcription initiation factor IIB, putative, expressed
MaizeGDB (Corn) Zm00025a044438
Brachypodium KQK05065
Barley HORVU1Hr1G066200.1 , HORVU1Hr1G066200.2 , HORVU1Hr1G066210.2 , HORVU1Hr1G066210.1 , HORVU1Hr1G078460.1
Wheat TraesCS1A02G368400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G211600 Up-reguralion under heat(PubMedID : 24916767)@gp176, putative, expressed -
2 Sobic.004G304300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K15095: (+)-neomenthol dehydrogenase
3 Sobic.003G426100 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
4 Sobic.002G195400 "Cinnamyl alcohol dehydrogenase, expressed in lignifying tissues"(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@Protein mannitol dehydrogenase (Os)(PubMedID : 27208977)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
5 Sobic.003G156200 cytochrome P450, putative, expressed -
6 Sobic.003G426000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
7 Sobic.007G066932 - -
8 Sobic.001G319700 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
9 Sobic.003G417700 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
10 Sobic.009G128700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
11 Sobic.004G180301 - -
12 Sobic.010G102300 expressed protein -
13 Sobic.010G042500 expressed protein -
14 Sobic.007G067350 - -
15 Sobic.001G338100 expressed protein -
16 Sobic.010G035700 expressed protein -
17 Sobic.001G330500 polygalacturonase inhibitor 1 precursor, putative, expressed -
18 Sobic.003G430600 OsCML19 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
19 Sobic.005G033900 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
20 Sobic.003G301600 heavy metal-associated domain containing protein, expressed -


Gene co-expression network
sample Sobic009G218200 Sobic009G218200 Sobic010G211600 Sobic010G211600 Sobic009G218200--Sobic010G211600 Sobic004G304300 Sobic004G304300 Sobic009G218200--Sobic004G304300 Sobic003G426100 Sobic003G426100 Sobic009G218200--Sobic003G426100 Sobic002G195400 Sobic002G195400 Sobic009G218200--Sobic002G195400 Sobic003G156200 Sobic003G156200 Sobic009G218200--Sobic003G156200 Sobic003G426000 Sobic003G426000 Sobic009G218200--Sobic003G426000 Sobic007G066932 Sobic007G066932 Sobic009G218200--Sobic007G066932 Sobic001G319700 Sobic001G319700 Sobic009G218200--Sobic001G319700 Sobic003G417700 Sobic003G417700 Sobic009G218200--Sobic003G417700 Sobic002G004900 Sobic002G004900 Sobic010G211600--Sobic002G004900 Sobic003G280200 Sobic003G280200 Sobic010G211600--Sobic003G280200 Sobic008G027600 Sobic008G027600 Sobic010G211600--Sobic008G027600 Sobic008G158100 Sobic008G158100 Sobic010G211600--Sobic008G158100 Sobic008G172600 Sobic008G172600 Sobic010G211600--Sobic008G172600 Sobic005G177600 Sobic005G177600 Sobic010G211600--Sobic005G177600 Sobic010G211600--Sobic003G417700 Sobic001G318500 Sobic001G318500 Sobic010G211600--Sobic001G318500 Sobic002G139300 Sobic002G139300 Sobic010G211600--Sobic002G139300 Sobic004G304300--Sobic007G066932 Sobic004G304300--Sobic003G426100 Sobic004G304300--Sobic002G195400 Sobic004G304300--Sobic003G426000 Sobic010G102300 Sobic010G102300 Sobic004G304300--Sobic010G102300 Sobic007G067350 Sobic007G067350 Sobic004G304300--Sobic007G067350 Sobic004G304300--Sobic001G319700 Sobic005G101800 Sobic005G101800 Sobic004G304300--Sobic005G101800 Sobic009G128700 Sobic009G128700 Sobic004G304300--Sobic009G128700 Sobic003G426100--Sobic007G066932 Sobic003G426100--Sobic002G195400 Sobic010G035700 Sobic010G035700 Sobic003G426100--Sobic010G035700 Sobic003G426100--Sobic010G102300 Sobic003G426100--Sobic007G067350 Sobic003G426100--Sobic004G304300 Sobic003G426100--Sobic001G319700 Sobic007G135201 Sobic007G135201 Sobic003G426100--Sobic007G135201 Sobic007G067600 Sobic007G067600 Sobic003G426100--Sobic007G067600 Sobic002G195400--Sobic007G067600 Sobic002G195400--Sobic001G319700 Sobic002G195400--Sobic003G426100 Sobic002G195400--Sobic007G066932 Sobic002G195400--Sobic010G102300 Sobic002G195400--Sobic003G426000 Sobic002G195400--Sobic007G067350 Sobic001G317000 Sobic001G317000 Sobic002G195400--Sobic001G317000 Sobic002G195400--Sobic004G304300 Sobic002G203700 Sobic002G203700 Sobic003G156200--Sobic002G203700 Sobic003G156200--Sobic003G417700 Sobic004G313100 Sobic004G313100 Sobic003G156200--Sobic004G313100 Sobic003G156200--Sobic003G280200 Sobic002G415100 Sobic002G415100 Sobic003G156200--Sobic002G415100 Sobic003G301600 Sobic003G301600 Sobic003G156200--Sobic003G301600 Sobic010G213700 Sobic010G213700 Sobic003G156200--Sobic010G213700 Sobic005G029200 Sobic005G029200 Sobic003G156200--Sobic005G029200 Sobic004G148200 Sobic004G148200 Sobic003G156200--Sobic004G148200 Sobic003G426000--Sobic002G195400 Sobic003G426000--Sobic009G128700 Sobic003G426000--Sobic007G067600 Sobic003G426000--Sobic004G304300 Sobic003G430600 Sobic003G430600 Sobic003G426000--Sobic003G430600 Sobic003G426300 Sobic003G426300 Sobic003G426000--Sobic003G426300 Sobic003G426000--Sobic005G101800 Sobic003G426000--Sobic001G319700 Sobic003G200700 Sobic003G200700 Sobic003G426000--Sobic003G200700 Sobic007G066932--Sobic007G067350 Sobic007G066932--Sobic003G426100 Sobic007G066932--Sobic002G195400 Sobic007G066932--Sobic010G102300 Sobic007G066932--Sobic007G067600 Sobic007G066932--Sobic004G304300 Sobic007G066932--Sobic001G319700 Sobic006G084600 Sobic006G084600 Sobic007G066932--Sobic006G084600 Sobic007G066932--Sobic007G135201 Sobic001G319700--Sobic010G102300 Sobic001G319700--Sobic002G195400 Sobic001G319700--Sobic007G067600 Sobic001G319700--Sobic003G426100 Sobic001G319700--Sobic007G066932 Sobic001G319700--Sobic010G035700 Sobic001G319700--Sobic007G067350 Sobic001G319700--Sobic003G426000 Sobic001G319700--Sobic004G304300 Sobic003G417700--Sobic003G280200 Sobic003G417700--Sobic003G156200 Sobic003G417700--Sobic004G148200 Sobic003G417700--Sobic005G029200 Sobic003G417700--Sobic009G128700 Sobic003G280100 Sobic003G280100 Sobic003G417700--Sobic003G280100 Sobic003G417700--Sobic010G213700 Sobic003G417700--Sobic003G426000 Sobic003G417700--Sobic008G158100
Octagon: transcription factors


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